Janice M. Straley

Sperm whale population structure in the eastern and central North Pacific inferred by the use of single-nucleotide polymorphisms, microsatellites and mitochondrial DNA.

We use mitochondrial DNA (mtDNA) (400 bp), six microsatellites and 36 single‐nucleotide polymorphisms (SNPs), 20 of which were linked, to investigate population structure of sperm whales (Physeter macrocephalus) in the eastern and central North Pacific. SNP markers, reproducible across technologies and laboratories, are ideal for long‐term studies of globally distributed species such as sperm whales, a species of conservation concern because of both historical and contemporary impacts. We estimate genetic differentiation among three strata in the temperate to tropical waters where females are found: California Current, Hawai`i and the eastern tropical Pacific. We then consider how males on sub‐Arctic foraging grounds assign to these strata. The California Current stratum was differentiated from both the other strata (P < 0.05) for mtDNA, microsatellites and SNPs, suggesting that the region supports a demographically independent population and providing the first indication that males may exhibit reproductive philopatry. Comparisons between the Hawai`i stratum and the eastern tropical Pacific stratum are not conclusive at this time. Comparisons with Alaska males were statistically significant, or nearly so, from all three strata and individuals showed mixed assignment to, and few exclusions from, the three potential source strata, suggesting widespread origin of males on sub‐Arctic feeding grounds. We show that SNPs have sufficient power to detect population structure even when genetic differentiation is low. There is a need for better analytical methods for SNPs, especially when linked SNPs are used, but SNPs appear to be a valuable marker for long‐term studies of globally dispersed and highly mobile species.

Geographic variation of persistent organic pollutant levels in humpback whale (Megaptera novaeangliae) feeding areas of the North Pacific and North Atlantic

Seasonal feeding behavior and high fidelity to feeding areas allow humpback whales (Megaptera novaeangliae) to be used as biological indicators of regional contamination. Biopsy blubber samples from male individuals (n = 67) were collected through SPLASH, a multinational research project, in eight North Pacific feeding grounds. Additional male samples (n = 20) were collected from one North Atlantic feeding ground. Persistent organic pollutants were measured in the samples and used to assess contaminant distribution in the study areas. North Atlantic (Gulf of Maine) whales were more contaminated than North Pacific whales, showing the highest levels of polychlorinated biphenyls (PCBs), polybrominated diphenyl ethers (PBDEs), and chlordanes. The highest dichlorodiphenyltrichloroethane (DDT) levels were detected in whales feeding off southern California, USA. High-latitude regions were characterized by elevated levels of hexachlorocyclohexanes (HCHs) but generally nondetectable concentrations of PBDEs. Age was shown to have a positive relationship with SigmaPCBs, SigmaDDTs, Sigmachlordanes, and total percent lipid. Contaminant levels in humpback whales were comparable to other mysticetes and lower than those found in odontocete cetaceans and pinnipeds. Although these concentrations likely do not represent a significant conservation threat, levels in the Gulf of Maine and southern California may warrant further study.

Observations of potential acoustic cues that attract sperm whales to longline fishing in the Gulf of Alaska

Sperm whales (Physeter macrocephalus) have learned to remove fish from demersal longline gear deployments off the eastern Gulf of Alaska, and are often observed to arrive at a site after a haul begins, suggesting a response to potential acoustic cues like fishing-gear strum, hydraulic winch tones, and propeller cavitation. Passive acoustic recorders attached to anchorlines have permitted continuous monitoring of the ambient noise environment before and during fishing hauls. Timing and tracking analyses of sperm whale acoustic activity during three encounters indicate that cavitation arising from changes in ship propeller speeds is associated with interruptions in nearby sperm whale dive cycles and changes in acoustically derived positions. This conclusion has been tested by cycling a vessel engine and noting the arrival of whales by the vessel, even when the vessel is not next to fishing gear. No evidence of response from activation of ship hydraulics or fishing gear strum has been found to date.

Summary of Reported Whale-Vessel Collisions in Alaskan Waters

Here we summarize 108 reported whale-vessel collisions in Alaska from 1978–2011, of which 25 are known to have resulted in the whales death. We found 89 definite and 19 possible/probable strikes based on standard criteria we created for this study. Most strikes involved humpback whales (86%) with six other species documented. Small vessel strikes were most common (<15 m, 60%), but medium (15–79 m, 27%) and large (≥80 m, 13%) vessels also struck whales. Among the 25 mortalities, vessel length was known in seven cases (190–294 m) and vessel speed was known in three cases (12–19 kn). In 36 cases, human injury or property damage resulted from the collision, and at least 15 people were thrown into the water. In 15 cases humpback whales struck anchored or drifting vessels, suggesting the whales did not detect the vessels. Documenting collisions in Alaska will remain challenging due to remoteness and resource limitations. For a better understanding of the factors contributing to lethal collisions, we recommend (1) systematic documentation of collisions, including vessel size and speed; (2) greater efforts to necropsy stranded whales; (3) using experienced teams focused on determining cause of death; (4) using standard criteria for validating collision reports, such as those presented in this paper.

Relationship between sperm whale (Physeter macrocephalus) click structure and size derived from videocamera images of a depredating whale (sperm whale prey acquisition)

Sperm whales have learned to depredate black cod (Anoplopoma fimbria) from longline deployments in the Gulf of Alaska. On May 31, 2006, simultaneous acoustic and visual recordings were made of a depredation attempt by a sperm whale at 108 m depth. Because the whale was oriented perpendicularly to the camera as it contacted the longline at a known distance from the camera, the distance from the nose to the hinge of the jaw could be estimated. Allometric relationships obtained from whaling data and skeleton measurements could then be used to estimate both the spermaceti organ length and total length of the animal. An acoustic estimate of animal length was obtained by measuring the inter-pulse interval (IPI) of clicks detected from the animal and using empirical formulas to convert this interval into a length estimate. Two distinct IPIs were extracted from the clicks, one yielding a length estimate that matches the visually-derived length to within experimental error. However, acoustic estimates of spermaceti organ size, derived from standard sound production theories, are inconsistent with the visual estimates, and the derived size of the junk is smaller than that of the spermaceti organ, in contradiction with known anatomical relationships.

Using Models of Social Transmission to Examine the Spread of Longline Depredation Behavior among Sperm Whales in the Gulf of Alaska

Fishing, farming and ranching provide opportunities for predators to prey on resources concentrated by humans, a behavior termed depredation. In the Gulf of Alaska, observations of sperm whales depredating on fish caught on demersal longline gear dates back to the 1970s, with reported incidents increasing in the mid-1990s. Sperm whale depredation provides an opportunity to study the spread of a novel foraging behavior within a population. Data were collected during National Marine Fisheries Service longline surveys using demersal longline gear in waters off Alaska from 1998 to 2010. We evaluated whether observations of depredation fit predictions of social transmission by fitting the temporal and spatial spread of new observations of depredation to the Wave of Advance model. We found a significant, positive relationship between time and the distance of new observations from the diffusion center (r2 = 0.55, p-value  = 0.003). The data provide circumstantial evidence for social transmission of depredation. We discuss how changes in human activities in the region (fishing methods and regulations) have created a situation in which there is spatial-temporal overlap with foraging sperm whales, likely influencing when and how the behavior spread among the population.

Baleen wear reveals intraoral water flow patterns of mysticete filter feeding.

A survey of macroscopic and microscopic wear patterns in the baleen of eight whale species (Cetacea: Mysticeti) discloses structural, functional, and life history properties of this neomorphic keratinous tissue, including evidence of intraoral water flow patterns involved in filter feeding. All baleen demonstrates wear, particularly on its medial and ventral edges, as flat outer layers of cortical keratin erode to reveal horn tubes, also of keratin, which emerge as hair‐like fringes. This study quantified five additional categories of specific wear: pitting of plates, scratching of plates, scuffing of fringes, shortening of fringes, and reorientation of fringes (including fringes directed between plates to the exterior of the mouth). Blue whale baleen showed the most pitting and sei whale baleen the most scratching; gray whale baleen had the most fringe wear. The location of worn baleen within the mouth suggests that direct contact with the tongue is not responsible for most wear, and that flowing water as well as abrasive prey or sediment carried by the flowing water likely causes pitting and scratching of plates as well as fringe fraying, scuffing, shortening, and reorientation. Baleen also has elevated vertical and horizontal ridges that are unrelated to wear; these are probably related to growth and may allow for age determination. J. Morphol. 277:453–471, 2016.

A comparison of acoustic and visual metrics of sperm whale longline depredation

Annual federal stock assessment surveys for Alaskan sablefish also attempt to measure sperm whale depredation by quantifying visual evidence of depredation, including lip remains and damaged fish. A complementary passive acoustic method for quantifying depredation was investigated during the 2011 and 2012 survey hauls. A combination of machine-aided and human analysis counted the number of distinct “creak” sounds detected on autonomous recorders deployed during the survey, emphasizing sounds that are followed by silence (“creak-pauses”), a possible indication of prey capture. These raw counts were then adjusted for variations in background noise levels between deployments. Both a randomized Pearson correlation analysis and a generalized linear model found that noise-adjusted counts of “creak-pauses” were highly correlated with survey counts of lip remains during both years (2012: r(10) = 0.89, p = 1e-3; 2011: r(39) = 0.72, p = 4e-3) and somewhat correlated with observed sablefish damage in 2011 [r(39) = 0.37, p = 0.03], but uncorrelated with other species depredation. The acoustic depredation count was anywhere from 10% to 80% higher than the visual counts, depending on the survey year and assumptions employed. The results suggest that passive acoustics can provide upper bounds on depredation rates; however, the observed correlation breaks down whenever three or more whales are present.

Using line acceleration to measure false killer whale (Pseudorca crassidens) click and whistle source levels during pelagic longline depredation

False killer whales (Pseudorca crassidens) depredate pelagic longlines in offshore Hawaiian waters. On January 28, 2015 a depredation event was recorded 14 m from an integrated GoPro camera, hydrophone, and accelerometer, revealing that false killer whales depredate bait and generate clicks and whistles under good visibility conditions. The act of plucking bait off a hook generated a distinctive 15 Hz line vibration. Two similar line vibrations detected at earlier times permitted the animals range and thus signal source levels to be estimated over a 25-min window. Peak power spectral density source levels for whistles (4-8 kHz) were estimated to be between 115 and 130 dB re 1 μPa2/Hz @ 1 m. Echolocation click source levels over 17-32 kHz bandwidth reached 205 dB re 1 μPa @ 1 m pk-pk, or 190 dB re 1 μPa @ 1 m (root-mean-square). Predicted detection ranges of the most intense whistles are 10 to 25 km at respective sea states of 4 and 1, with click detection ranges being 5 times smaller than whistles. These detection range analyses provide insight into how passive acoustic monitoring might be used to both quantify and avoid depredation encounters.

Model‐based passive acoustic tracking of sperm whale foraging behavior in the Gulf of Alaska

In 2004, the Southeast Alaska Sperm Whale Avoidance Project (SEASWAP) introduced the use of passive acoustics to help monitor the behavior of sperm whales depredating longline fishing operations. Acoustic data from autonomous recorders mounted on longlines provide the opportunity to demonstrate a tracking algorithm based on acoustic propagation modeling while providing insight into whales’ foraging behavior. With knowledge of azimuthally dependent bathymetry, a 3D track of whale motion can be obtained using data from just one hydrophone by exploiting multipath arrival information from recorded sperm whale clicks. The evolution of multipath arrival patterns is matched to range‐, depth‐, and azimuth‐dependent modeled arrival patterns to generate an estimate of whale motion. This technique does not require acoustic ray identification (i.e., direct path, surface reflected, etc.) while still utilizing individual ray arrival information, and it can also account for all waveguide propagation physics such as inte...