Jean-Yves Cornu

Prediction of Zinc and Cadmium Phytoavailability Within a Contaminated Agricultural Site using DGT

Environmental Context.In some agricultural areas, soils are contaminated by trace elements. This contamination of cultivated soils may constitute a serious problem for human health through the accumulation of metals in the edible parts of crops. In order to assess the risk for human health associated with metal contamination of soil, we need to develop simple tools like Diffusive Gradients in Thin Films (DGT) for predicting crop metal accumulation. The present study focuses on an agricultural site contaminated with fallout from industrial dust and reveals that DGT could be a predictive tool of zinc accumulation in lettuce. Abstract.Risk assessment of metal contamination in cultivated soils needs to address metal phytoavailability. The technique of diffusive gradients in thin films (DGT) has been shown to be a promising tool to assess metal phytoavailability in a wide range of soils. The present study has examined the ability of the DGT method to predict metal phytoavailability within a contaminated agricultural site. Lettuce (Lactuva sativa cv Appia) was grown in nine metal-contaminated soils differing mainly by their pH. Metal concentrations (Zn, Cd) in plant shoots were compared with total soil metal concentrations and free ion metal concentrations in soil pore waters, and effective concentrations, CE, measured by DGT. Plant Zn concentrations were highly related to CE, suggesting DGT can be a sensitive tool able to assess Zn phytoavailability within mildly contaminated agricultural soils. Plant Cd concentrations were less closely related to CE, signifying that processes other than Cd re-supply from the solid phase may occur during soil–plant transfer of Cd.

Selection of low cost materials for the sorption of copper and herbicides as single or mixed compounds in increasing complexity matrices.

Low cost materials (sugar beet pulp, corncob, corncob char, perlite, vermiculite, sand, sediment) have been tested for their ability to quickly sorb copper, glyphosate, diuron and 3,4-dichloroaniline (3,4-DCA) as single or mixed compounds. Tests have been performed in increasingly complex liquid matrices: ultra pure water (UPW), runoff water (RW) and sediment extract medium (SEM). Highest sorption levels in UPW are achieved with corncob char for Cu (93%), glyphosate (74%), diuron (98%) and 3,4-DCA (99%). Other ready-to-use adequate sorbents are sugar beet pulp for Cu and sand for glyphosate, diuron and 3,4-DCA. Sorption levels obtained in UPW are significantly altered in SEM as a result of its higher dissolved organic carbon concentration, tenuous changes being obtained with RW. Interactions between herbicides and Cu are pointed out: higher sorption level is observed for glyphosate in mixture with Cu, as it is observed with diuron and 3,4-DCA when mixed with all other pollutants. Langmuir model has been found to better fit the data for copper, whereas Freundlich one has been found more relevant for diuron and 3,4-DCA. Our results stress the need for studying adsorption in different matrices when searching for sorbents to be used in field conditions.

Siderophore‐promoted dissolution of smectite by fluorescent Pseudomonas

Siderophores are organic chelators produced by microorganisms to fulfil their iron requirements. Siderophore-promoted dissolution of iron-bearing minerals has been clearly documented for some siderophores, but few studies have addressed metabolizing siderophore-producing bacteria. We investigated iron acquisition from clays by fluorescent Pseudomonads, bacteria that are ubiquitous in the environment. We focused on the interactions between smectite and Pseudomonas aeruginosa, a bacterium producing two structurally different siderophores: pyoverdine and pyochelin. The presence of smectite in iron-limited growth media promoted planktonic growth of P. aeruginosa and biofilm surrounding the smectite aggregates. Chemical analysis of the culture media indicated increases in the dissolved silicon, iron and aluminium concentrations following smectite supplementation. The use of P. aeruginosa mutants unable to produce either one or both of the two siderophores indicated that pyoverdine, the siderophore with the higher affinity for iron, was involved in iron and aluminium solubilization by the wild-type strain. However, in the absence of pyoverdine, pyochelin was also able to solubilize iron but with a twofold lower efficiency. In conclusion, pyoverdine and pyochelin, two structurally different siderophores, can solubilize structural iron from smectite and thereby make it available for bacterial growth.

Cadmium speciation assessed by voltammetry, ion exchange and geochemical calculation in soil solutions collected after soil rewetting

Analytical techniques and speciation models have been developed to characterize the speciation of Cd in soil solution. They provide an estimate of operationally defined species of Cd that need to be compared, especially for soil solutions highly concentrated in organic matter as are the solutions collected after soil rewetting. This work deals with the comparison between the speciation of Cd measured by anodic stripping voltammetry (ASV) and ion exchange and the speciation of Cd calculated using Visual MINTEQ. The aim of this study was to quantify and explain the differences in Cd speciation observed between the three approaches. Cd speciation was assessed in soil solutions collected 4, 8, 24, 48, 96 and 144h after the rewetting of an air-dried contaminated soil. To optimize the computed speciation of Cd, other physico-chemical parameters were followed (e.g. pH, ionic strength and the concentrations of major anions, major cations and dissolved organic carbon) and a brief characterisation of dissolved organic matter (DOM) was performed. The discrepancy between model predictions and analytical measurements highlighted the need for caution in the interpretation of geochemical speciated data for Cd. The major result of this study was that a characterization of DOM based on its specific UV-absorbance at 254 nm improved the accuracy of model predictions. Another finding is that labile Cd complexes, even organic, may have been included in the electrochemically labile fraction of Cd measured by ASV.

Bioremediation of copper-contaminated soils by bacteria

Although copper (Cu) is an essential micronutrient for all living organisms, it can be toxic at low concentrations. Its beneficial effects are therefore only observed for a narrow range of concentrations. Anthropogenic activities such as fungicide spraying and mining have resulted in the Cu contamination of environmental compartments (soil, water and sediment) at levels sometimes exceeding the toxicity threshold. This review focuses on the bioremediation of copper-contaminated soils. The mechanisms by which microorganisms, and in particular bacteria, can mobilize or immobilize Cu in soils are described and the corresponding bioremediation strategies—of varying levels of maturity—are addressed: (i) bioleaching as a process for the ex situ recovery of Cu from Cu-bearing solids, (ii) bioimmobilization to limit the in situ leaching of Cu into groundwater and (iii) bioaugmentation-assisted phytoextraction as an innovative process for in situ enhancement of Cu removal from soil. For each application, the specific conditions required to achieve the desired effect and the practical methods for control of the microbial processes were specified.

Herbicide mitigation in microcosms simulating stormwater basins subject to polluted water inputs.

Non-point source pollution as a result of wine-growing activity is of high concern. Stormwater basins (SWB) found downstream of vineyard watersheds could show a potential for the mitigation of runoff water containing herbicides. In this study, mitigation of vinery-used herbicides was studied in microcosms with a very similar functioning to that recorded in SWB. Mitigation efficiency of glyphosate, diuron and 3,4-dichloroaniline (3,4-DCA) was investigated by taking into account hydraulic flow rate, mitigation duration, bioaugmentation and plant addition. Mitigation efficiency measured in water ranged from 63.0% for diuron to 84.2% for 3,4-DCA and to 99.8% for glyphosate. Water-storage duration in the SWB and time between water supplies were shown to be the most influential factors on the mitigation efficiency. Six hours water-storage duration allowed an efficient sorption of herbicides and their degradation by indigenous microorganisms in 5 weeks. Neither bioaugmentation nor plant addition had a significant effect on herbicide mitigation. Our results show that this type of SWB are potentially relevant for the mitigation of these herbicides stemming from wine-growing activity, providing a long enough hydraulic retention time.

Quantification of the 16S-23S rRNA internal transcribed spacers of Burkholderia xenovorans strain LB400 using real-time PCR in soil samples.

This study establishes a new real‐time PCR assay (using SYBR Green™ detection) for the identification and the direct quantification of specific individual Burkholderia xenovorans strain LB400 from DNA samples of soil and sediment. Specific primers were designed to amplify a 190‐bp fragment of the 16S–23S rRNA internal transcribed spacers (ITS) from LB400. The specificity of primers was evaluated using 21 strains. The detection limit of the real‐time PCR was analysed on soil samples inoculated with LB400 and was of 6 copies (105 CFU g−1 of dry sample). The 16S–23S rRNA ITS primers developed in this work for rapid quantification of LB400 were validated. The assay allowed the quantification of LB400 as pure strain and among the indigenous microbial community in samples of soil and sediment (105‐day experiment).

Using a dune forest as a filtering ecosystem for water produced by a treatment plant – One decade of environmental assessment

A dune forest in SW France composed of maritime pines was irrigated with treated wastewater for a decade in an experiment (including irrigated plots versus control plots) to evaluate the environmental impact of applying wastewater on the water table, soil properties, and plants. The amount of treated wastewater (1921 mm yr-1) applied was twice the annual precipitation. Nutrient inputs were also very high, particularly nitrogen (N: 539 kg-N ha-1 yr-1), phosphorus (P: 102 kg-P ha-1 yr-1), and calcium (Ca: 577 kg-Ca ha-1 yr-1). Irrigation caused a rise in the water table, and increased its sodium (Na), NO3-, potassium (K), and calcium concentrations. Soil properties were affected by irrigation at least down to a depth of 1.2 m. After eight years of irrigation, soil pH had increased by 1.4 units, and soil available P content (POlsen) increased nearly 8-fold. In the short-term (i.e. 1-3 years), irrigation with treated wastewater improved growth, standing biomass, and the nutritional status of the vegetation. But tree dieback started in the fourth year of irrigation and worsened until the end of the monitoring period when almost all the irrigated trees were dead or moribund. The understory composition was drastically modified by irrigation, with an increase in α-biodiversity and in the biomass of herbaceous species, and a reduction in woody species abundance. The factor that best explained tree dieback was manganese nutrition (Mn): (i) the Mn content of the tree foliage was negatively affected by irrigation and below the deficiency values reported for pine species, and (ii) soil available Mn (CaCl2 extraction) decreased by half in the topsoil layer. Manganese deficiency was probably the consequence of the increase in soil pH, which in turn reduced soil Mn availability. Tree dieback was not related to either to a macronutrient deficiency or to toxicity caused by a trace element.

Source of Ca, Cd, Cu, Fe, K, Mg, Mn, Mo and Zn in grains of sunflower ( Helianthus annuus ) grown in nutrient solution: root uptake or remobilization from vegetative organs?

AimsThis study investigated the possible source organs delivering several trace elements to seeds (root uptake versus net remobilization), by studying changes in biomass and element contents in the plant organs.MethodsSunflowers were grown in a greenhouse using a nutrient solution enriched with Cd. Four samplings were performed from the early flowering to the seeds physiological maturity.ResultsThe low grain Ca indicated that phloem was likely the main route for transporting the elements to seeds. Excluding roots, the mass balance of the elements indicated the following contribution of the net remobilization to the total quantities in seeds at maturity: Mg = 50%, Cd = 14%, Cu = 35%, Fe = 29%, Mn = 19%, Zn = 12%. Source organs were mainly the receptacle and the stem. No significant net remobilization was observed for Ca, K and Mo.ConclusionsThe amount of trace elements accumulated in vegetative parts can be redistributed to seeds in an extent that depended on the element. Due to the important contribution of root uptake to the content in seeds at maturity, the availability of elements in soil during the reproductive stages is an important point to consider.