Jeffrey G. Baguley

Global Patterns and Predictions of Seafloor Biomass Using Random Forests

A comprehensive seafloor biomass and abundance database has been constructed from 24 oceanographic institutions worldwide within the Census of Marine Life (CoML) field projects. The machine-learning algorithm, Random Forests, was employed to model and predict seafloor standing stocks from surface primary production, water-column integrated and export particulate organic matter (POM), seafloor relief, and bottom water properties. The predictive models explain 63% to 88% of stock variance among the major size groups. Individual and composite maps of predicted global seafloor biomass and abundance are generated for bacteria, meiofauna, macrofauna, and megafauna (invertebrates and fishes). Patterns of benthic standing stocks were positive functions of surface primary production and delivery of the particulate organic carbon (POC) flux to the seafloor. At a regional scale, the census maps illustrate that integrated biomass is highest at the poles, on continental margins associated with coastal upwelling and with broad zones associated with equatorial divergence. Lowest values are consistently encountered on the central abyssal plains of major ocean basins The shift of biomass dominance groups with depth is shown to be affected by the decrease in average body size rather than abundance, presumably due to decrease in quantity and quality of food supply. This biomass census and associated maps are vital components of mechanistic deep-sea food web models and global carbon cycling, and as such provide fundamental information that can be incorporated into evidence-based management.

Deep-Sea Benthic Footprint of the Deepwater Horizon Blowout

The Deepwater Horizon (DWH) accident in the northern Gulf of Mexico occurred on April 20, 2010 at a water depth of 1525 meters, and a deep-sea plume was detected within one month. Oil contacted and persisted in parts of the bottom of the deep-sea in the Gulf of Mexico. As part of the response to the accident, monitoring cruises were deployed in fall 2010 to measure potential impacts on the two main soft-bottom benthic invertebrate groups: macrofauna and meiofauna. Sediment was collected using a multicorer so that samples for chemical, physical and biological analyses could be taken simultaneously and analyzed using multivariate methods. The footprint of the oil spill was identified by creating a new variable with principal components analysis where the first factor was indicative of the oil spill impacts and this new variable mapped in a geographic information system to identify the area of the oil spill footprint. The most severe relative reduction of faunal abundance and diversity extended to 3 km from the wellhead in all directions covering an area about 24 km2. Moderate impacts were observed up to 17 km towards the southwest and 8.5 km towards the northeast of the wellhead, covering an area 148 km2. Benthic effects were correlated to total petroleum hydrocarbon, polycyclic aromatic hydrocarbons and barium concentrations, and distance to the wellhead; but not distance to hydrocarbon seeps. Thus, benthic effects are more likely due to the oil spill, and not natural hydrocarbon seepage. Recovery rates in the deep sea are likely to be slow, on the order of decades or longer.

Cryptic diversity of the 'cosmopolitan' harpacticoid copepod Nannopus palustris: genetic and morphological evidence.

Nannopus palustris Brady, 1880 is a free‐living widely distributed harpacticoid copepod, which has been formerly assumed to be a single, cosmopolitan but highly variable species. We compared several geographically distant N. palustris populations in terms of their morphology and genetics. Populations from the White Sea (WS), the North Sea (NS), the Black Sea (BS) and two sympatric morphs from South Carolina, USA (SC notched and SC straight morphs), were considered. The NS, BS and to a lesser extent SC notched specimens were morphologically similar and partly coincided to the ‘canonical’ description of the species. By contrast, WS population showed remarkable anatomical and morphometric peculiarities that correspond to some earlier descriptions. Genetic analyses of mitochondrial (cytochrome b) and nuclear (28S rDNA) genes demonstrated the significant distinctness among WS, both SC and (NS+BS) populations, the latter two being genetically indistinguishable. Concordance between mitochondrial and nuclear gene trees and morphological data supports that N. palustris is in fact composed of several pseudo‐sibling species, which are genetically and morphologically divergent. Neither correlation between genetic divergence and geographical distance nor significant intrapopulation diversity was found for these species. Taxonomic status, distribution and phylogenetic relationships of the species within the Nannopus genus need to be reconsidered. A further subdivision of species complexes might have important implications for the analysis of biodiversity of benthic copepods and consequently for the interpretation of their (species‐specific) ecological function.

Evolution of seed dispersal in North American Ephedra

Related plants often produce seeds that are dispersed in very different ways, raising questions of how and why plants undergo adaptive shifts in key aspects of their reproductive ecology. Here we analyze the evolution of seed dispersal syndromes in an ancient group of plants. Ephedra (Gymnospermae; Gnetales; Ephedraceae) is a genus containing ≈50 species in semiarid ecosystems worldwide and with three distinct types of cones. We collected mature cones and seeds of ten species of Ephedra in southwestern United States and measured nine morphological traits for each species. Principal component analysis and other data characterized three types of Ephedra cones and seeds. Species with dry, winged cone bracts are dispersed by wind (i.e., E. torreyana and E. trifurca), those with succulent, brightly-colored cone bracts are dispersed by frugivorous birds (i.e., E. antisyphilitica), and those with small, dry cone bracts and large seeds are dispersed by seed-caching rodents (e.g., E. viridis and E. californica). Two species (E. funerea and E. nevadensis) have cone and seed morphologies intermediate between two seed dispersal syndromes. Seed and cones traits were mapped onto two recent phylogenies to help reveal the evolutionary history of seed dispersal syndromes. Bird dispersal is thought to be the ancestral form of seed dispersal in ephedras as it is common in the Old World where Ephedra originated, but the three North American species dispersed by birds are not monophyletic. The two wind dispersed species in North America also do not cluster together, suggesting separate origins. Seed dispersal by seed-caching rodents is common in North America and appears to have evolved several times, but this syndrome is absent form other continents. The evolutionary history of Ephedra in North America suggests that the means of seed dispersal has been malleable. Evolutionary shifts were likely linked to changes in ecological conditions.

Do meio- and macrobenthic nematodes differ in community composition and body weight trends with depth?

Nematodes occur regularly in macrobenthic samples but are rarely identified from them and are thus considered exclusively a part of the meiobenthos. Our study compares the generic composition of nematode communities and their individual body weight trends with water depth in macrobenthic (>250/300 µm) samples from the deep Arctic (Canada Basin), Gulf of Mexico (GOM) and the Bermuda slope with meiobenthic samples (<45 µm) from GOM. The dry weight per individual (µg) of all macrobenthic nematodes combined showed an increasing trend with increasing water depth, while the dry weight per individual of the meiobenthic GOM nematodes showed a trend to decrease with increasing depth. Multivariate analyses showed that the macrobenthic nematode community in the GOM was more similar to the macrobenthic nematodes of the Canada Basin than to the GOM meiobenthic nematodes. In particular, the genera Enoploides, Crenopharynx, Micoletzkyia, Phanodermella were dominant in the macrobenthos and accounted for most of the difference. Relative abundance of non-selective deposit feeders (1B) significantly decreased with depth in macrobenthos but remained dominant in the meiobenthic community. The occurrence of a distinct assemblage of bigger nematodes of high dry weight per individual in the macrobenthos suggests the need to include nematodes in macrobenthic studies.

Use of a novel sediment exposure to determine the effects of triclosan on estuarine benthic communities

Triclosan (5-chloro-2-[2,4-dichlorophenoxy]phenol) is a relatively new, commonly used antimicrobial compound found in many personal care products. Triclosan is toxic to marine organisms at the micrograms per liter level, can photodegrade to a dioxin, can accumulate in humans, and has been found to be stable in marine sediments for over 30 years. To determine the effects of triclosan on marine benthic communities, intact sediment cores were brought into the laboratory and held under flowing seawater conditions. A 2-cm layer of triclosan-spiked sediment was applied to the surface, and after a two-week exposure the meio- and macrofaunal communities were assessed for differences in composition relative to nonspiked cores. A high triclosan treatment (180 mg/kg dry wt) affected both the meio- and the macrobenthic communities. There were no discernible differences with a low-triclosan treatment (14 mg/kg dry wt). This exposure method is effective for testing the benthic community response to sediment contaminants, but improvements should be made with regard to the amount and method of applying the overlying sediment to prevent smothering of fragile benthic organisms.

Assessment of Longitudinal Gradients in Nematode Communities in the Deep Northern Gulf of Mexico and Concordance with Benthic Taxa

Meiobenthic nematode assemblages were examined at 16 stations along two transects on the eastern and western boundaries of the deep northern Gulf of Mexico (dNGOM) at depths of 212–3000 m. The highest abundance (297 individuals 10 cm−2) and number of genera (71) occurred at stations near the Mississippi River delta. Number of genera decreased with increasing depth, and showed differences in community composition between the east and west regions. The dominant family, Comesomatidae, was represented by Sabatieria that was present at most shallow stations but absent at greater water depths. A significant difference in nematode feeding morphology was observed between depth groups but not between the two transects at different longitudes. Patterns of nematode community structure are congruent with harpacticoid copepods. Overall, the higher abundance and diversity of nematodes in the north-central Gulf of Mexico is consistent with findings of other benthic taxa and reflects organic material loading from the Mississippi River driving deep sea communities in the Gulf. The east-west gradient in composition of nematode communities suggests that nematode assemblages have well-defined distribution patterns similar to other meiobenthic taxa in the GOM but they are not aligned in the bathymetric zones observed in macrofauna, megafauna and demersal fishes.

Persistent impacts to the deep soft-bottom benthos one year after the Deepwater Horizon event.

In fall 2010, several months after the Deepwater Horizon blowout was capped, zones of moderate and severe impacts to deep-sea, soft-bottom benthos were identified that together extended over an area of 172 km2 . A subset of stations sampled in 2010 was resampled in May and June 2011, 10 to 11 months after the event, to determine whether the identified adverse effects were persisting. The design compared 20 stations from the combined moderate and severe impact zone to 12 stations in the reference zone that were sampled in both years. There were no statistically significant differences in contaminant concentrations between the impact and nonimpact zones from 2010 to 2011, which indicates contaminants persisted after 1 y. Whereas there were some signs of recovery in 2011 (particularly for the meiofauna abundance and diversity), there was evidence of persistent, statistically significant impacts to both macrofauna and meiofauna community structure. Macrofaunal taxa richness and diversity in 2011 were still 22.8% and 35.9% less, respectively, in the entire impact zone than in the surrounding nonimpact area, and meiofaunal richness was 28.5% less in the entire impact zone than in the surrounding area. The persistence of significant biodiversity losses and community structure change nearly 1 y after the wellhead was capped indicates that full recovery had yet to have occurred in 2011. Integr Environ Assess Manag 2017;13:342-351.

Reproduction and Population Structure of Corbicula fluminea in an Oligotrophic Subalpine Lake

ABSTRACT Reproductive effort and population structure of the nonnative clam Corbicula fluminea were studied in an oligotrophic subalpine lake. Three shallow sites (5 m) and one deeper site (20 m) were studied between May 11, 2010, and November 5, 2010, to determine spatial variation and the influence of environmental conditions (e.g., temperature and food availability as determined by total organic carbon (TOC) and sediment particulate organic matter (SPOM) on reproductive effort. The clam C. fluminea exhibited a univoltine spawn cued by increases in temperature. Reproductive effort calculated for adult clams (13.67 ± 0.03 mm (SE), n = 1,875) across sites was not influenced by TOC and SPOM concentrations, and overall reproductive effort was less than more productive ecosystems, which may be a result of Lake Tahoes ultraoligotrophy. All 3 shallow sites had similar levels of reproductive effort. Once veligers were observed, of the 603 clams then dissected, there were 10 ± 2 veligers per clam (±SE), 25 clams had≥100 veligers per clam (286 ± 28 veligers per clam), 78 clams contained less than 100 veligers (20 ± 2 veligers per clam), and 498 clams had no veligers present, indicating the population exhibits a highly variable reproductive effort. There was, at a minimum, a 4-wk delay from the point that temperatures reached a threshold for fertilization and veliger release until they were observed in dissected clams. At 20 m, C. fluminea were high in abundance compared with shallow sites, but contained few fully developed juveniles, indicating a potential population sink. Overall population structure was dominated by adult clams (≥13 mm), with a minimal presence of juveniles (≤4 mm).

Effects of micronized and nano‐copper azole on marine benthic communities

The widespread use of copper nanomaterials (CuNMs) as antibacterial and antifouling agents in consumer products increases the risk for metal contamination and adverse effects in aquatic environments. Information gaps exist on the potential toxicity of CuNMs in marine environments. We exposed field-collected marine meio- and macrobenthic communities to sediments spiked with micronized copper azole (MCA) using a novel method that brings intact benthic cores into the laboratory and exposes the organisms via surface application of sediments. Treatments included field and laboratory controls, 3 spiked sediments: low-MCA (51.9 mg/kg sediment), high-MCA (519 mg/kg sediment), and CuSO4 (519 mg/kg sediment). In addition, single-species acute testing was performed with both MCA and CuSO4. Our results indicate that meio- and macrofaunal assemblages exposed to High-MCA and CuSO4 treatments differed significantly from both the laboratory control and the low-MCA treatments. Differences in macrofauna were driven by decreases in 3 Podocopa ostracod species, the bivalve Gemma gemma, and the polychaetes Exogone verugera and Prionospio heterobranchia relative to the laboratory control. Differences in the meiofaunal community are largely driven by nematodes. The benthic community test results were more sensitive than the single-species test results. Findings of this investigation indicate that CuNMs represent a source of risk to marine benthic communities comparable to that of dissolved Cu. Environ Toxicol Chem 2018;37:362-375. Published 2017 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the United States of America.