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Dive into the research topics where Jeremy W. Ellis is active.

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Featured researches published by Jeremy W. Ellis.


Journal of General Virology | 2012

Quantification of heterosubtypic immunity between avian influenza subtypes H3N8 and H4N6 in multiple avian host species

Kim M. Pepin; Kaci K. VanDalen; Nicole L. Mooers; Jeremy W. Ellis; Heather J. Sullivan; J. Jeffrey Root; Colleen T. Webb; Alan B. Franklin; Susan A. Shriner

Low-pathogenicity avian influenza virus (LPAIV) can lead to epizootics that cause economic losses in poultry or the emergence of human-infectious strains. LPAIVs experience a complex immunity landscape as they are endemic in numerous host species, and many antigenically distinct strains co-circulate. Prevention and control of emergence of detrimental strains requires an understanding of infection/transmission characteristics of the various subtypes in different hosts, including interactions between subtypes. In order to develop analytical frameworks for examining control efficacy, quantification of heterosubtypic immunity interactions is fundamental. However, these data are scarce, especially for wild avian subtypes in natural hosts. Consequently, in this study, three host species (mallards, quail and pheasants) were infected with two LPAIV subtypes isolated from wild birds: H3N8 and H4N6. The recovered hosts were also reinfected with the alternate subtype to measure the effects of heterosubtypic immunity. Oropharyngeal and cloacal swabs were collected and viral RNA load was quantified by real-time RT-PCR. For secondary infections in recovered hosts, peak viral load was up to four orders of magnitude lower and shedding length was up to 4 days shorter. However, both the magnitude and presence of heterosubtypic immunity varied across specific host species/subtype combinations. Using a mathematical model of virus replication, the variation in virus replication dynamics due to host individuals was quantified. It was found that accounting for individual heterogeneity is important for drawing accurate conclusions about treatment effects. These results are relevant for developing epidemiological models to inform control practices and for analysing virus replication data.


Physiology & Behavior | 2012

The role of a generalized ultraviolet cue for blackbird food selection

Scott J. Werner; Shelagh K. Tupper; James C. Carlson; Susan E. T. Pettit; Jeremy W. Ellis; George M. Linz

Birds utilize ultraviolet (UV) wavelengths for plumage signaling and sexual selection. Ultraviolet cues may also be used for the process of avian food selection. The aim of our study was to investigate whether a UV cue and a postingestive repellent can be used to condition food avoidance in red-winged blackbirds (Agelaius phoeniceus). We found that birds conditioned with an UV-absorbent, postingestive repellent subsequently avoided UV-absorbent food. Thus, the UV-absorbent cue (coupled with 0-20% of the conditioned repellent concentration) was used to maintain avoidance for up to 18 days post-conditioning. Similarly, birds conditioned with the UV-absorbent, postingestive repellent subsequently avoided UV-reflective food. Thus, conditioned avoidance of an UV-absorbent cue can be generalized to an unconditioned, UV-reflective cue for nutrient selection and toxin avoidance. These findings support the hypothesized function of UV vision for avian food selection, the implications of which remain to be explored for the sensory and behavioral ecology within agronomic and natural environments.


Scientific Reports | 2015

When fur and feather occur together: interclass transmission of avian influenza A virus from mammals to birds through common resources.

J. Jeffrey Root; Susan A. Shriner; Jeremy W. Ellis; Kaci K. VanDalen; Heather J. Sullivan; Alan B. Franklin

The potential role of wild mammals in avian influenza A virus (IAV) transmission cycles has received some attention in recent years and cases where birds have transmitted IAV to mammals have been documented. However, the contrasting cycle, wherein a mammal could transmit an avian IAV to birds, has been largely overlooked. We experimentally tested the abilities of two mammalian species to transmit avian IAV to mallards (Anas platyrhynchos) in simulated natural environments. Results suggested that striped skunks (Mephitis mephitis) can successfully transmit avian IAV to mallards through indirect contact with shared resources, as transmission was noted in 1 of 4 of the mallards tested. Cottontail rabbits (Sylvilagus sp.) exhibited a similar pattern, as one of five cottontail rabbits successfully transmitted IAV to a mallard, likely through environmental contamination. For each mammalian species tested, the mallards that became infected were those paired with the individual mammals with the lowest shedding levels but were anecdotally observed to be the most active animals. Mammals associated with and around poultry rearing facilities should be taken into consideration in biosecurity plans.


PLOS ONE | 2014

Extended Viral Shedding of a Low Pathogenic Avian Influenza Virus by Striped Skunks (Mephitis mephitis)

J. Jeffrey Root; Susan A. Shriner; Kevin T. Bentler; Thomas Gidlewski; Nicole L. Mooers; Jeremy W. Ellis; Terry R. Spraker; Kaci K. VanDalen; Heather J. Sullivan; Alan B. Franklin

Background Striped skunks (Mephitis mephitis) are susceptible to infection with some influenza A viruses. However, the viral shedding capability of this peri-domestic mammal and its potential role in influenza A virus ecology are largely undetermined. Methodology/Principal Findings Striped skunks were experimentally infected with a low pathogenic (LP) H4N6 avian influenza virus (AIV) and monitored for 20 days post infection (DPI). All of the skunks exposed to H4N6 AIV shed large quantities of viral RNA, as detected by real-time RT-PCR and confirmed for live virus with virus isolation, from nasal washes and oral swabs (maximum ≤106.02 PCR EID50 equivalent/mL and ≤105.19 PCR EID50 equivalent/mL, respectively). Some evidence of potential fecal shedding was also noted. Following necropsy on 20 DPI, viral RNA was detected in the nasal turbinates of one individual. All treatment animals yielded evidence of a serological response by 20 DPI. Conclusions/Significance These results indicate that striped skunks have the potential to shed large quantities of viral RNA through the oral and nasal routes following exposure to a LP AIV. Considering the peri-domestic nature of these animals, along with the duration of shedding observed in this species, their presence on poultry and waterfowl operations could influence influenza A virus epidemiology. For example, this species could introduce a virus to a naive poultry flock or act as a trafficking mechanism of AIV to and from an infected poultry flock to naive flocks or wild bird populations.


Physiology & Behavior | 2014

Functional significance of ultraviolet feeding cues in wild turkeys

Scott J. Werner; Richard Buchholz; Shelagh K. Tupper; Susan E. T. Pettit; Jeremy W. Ellis

WERNER, S. J., R. BUCHHOLZ, S. K. TUPPER, S. E. PETTIT AND J. W. ELLIS. Functional significance of ultraviolet feeding cues in wild turkeys. PHYSIOL BEHAV 00:000-000, 2013.- Most birds are able to sense ultraviolet (UV) visual signals. Ultraviolet wavelengths are used for plumage signaling and sexual selection among birds. The aim of our study was to determine if UV cues are also used for the process of food selection in wild turkeys (Meleagris gallopavo). We used avoidance conditioning to test the hypothesis that UV feeding cues can be used functionally for foraging behavior in wild turkeys. Female turkeys exhibited no avoidance of untreated food and 75-98% avoidance of food treated with an UV-absorbent, postingestive repellent (0.5-4% anthraquinone; wt/wt) during repellent exposure. Male turkeys exhibited 78-99% avoidance of food treated with 0.5-4% anthraquinone. Female and male turkeys that consumed more than 200mg and 100mg of anthraquinone, respectively, subsequently avoided food treated only with an UV-absorbent cue. In contrast, unconditioned females consumed 58% more food treated with the UV-absorbent cue than untreated food. Thus, wild turkeys do not prefer foods associated with UV wavelengths regardless of feeding experience. We also observed 1) a weak negative correlation between body condition and intestinal parasite infection and 2) moderate, positive correlations between consumption of food treated with the conditioned UV cue and intestinal parasite infection among male turkeys. The UV feeding cue was used to maintain food avoidance during the four days subsequent to postingestive conditioning. Moreover, the consequences of consuming food treated with the postingestive, UV-absorbent repellent were necessary for conditioned avoidance of the UV-absorbent cue. These findings suggest functional significance of UV feeding cues for avian foraging behavior, the implications of which will enable subsequent investigations regarding the sensory physiology and behavioral ecology of wild birds.


PLOS ONE | 2017

Impact of body condition on influenza A virus infection dynamics in mallards following a secondary exposure

Nicholas G. Dannemiller; Colleen T. Webb; Kenneth R. Wilson; Kevin T. Bentler; Nicole L. Mooers; Jeremy W. Ellis; J. Jeffrey Root; Alan B. Franklin; Susan A. Shriner

Migratory waterfowl are often viewed as vehicles for the global spread of influenza A viruses (IAVs), with mallards (Anas platyrhynchos) implicated as particularly important reservoir hosts. The physical demands and energetic costs of migration have been shown to influence birds’ body condition; poorer body condition may suppress immune function and affect the course of IAV infection. Our study evaluated the impact of body condition on immune function and viral shedding dynamics in mallards naturally exposed to an H9 IAV, and then secondarily exposed to an H4N6 IAV. Mallards were divided into three treatment groups of 10 birds per group, with each bird’s body condition manipulated as a function of body weight by restricting food availability to achieve either a -10%, -20%, or control body weight class. We found that mallards exhibit moderate heterosubtypic immunity against an H4N6 IAV infection after an infection from an H9 IAV, and that body condition did not have an impact on shedding dynamics in response to a secondary exposure. Furthermore, body condition did not affect aspects of the innate and adaptive immune system, including the acute phase protein haptoglobin, heterophil/lymphocyte ratios, and antibody production. Contrary to recently proposed hypotheses and some experimental evidence, our data do not support relationships between body condition, infection and immunocompetence following a second exposure to IAV in mallards. Consequently, while annual migration may be a driver in the maintenance and spread of IAVs, the energetic demands of migration may not affect susceptibility in mallards.


Archives of Virology | 2017

Transmission of H6N2 wild bird-origin influenza A virus among multiple bird species in a stacked-cage setting

J. Jeffrey Root; Susan A. Shriner; Jeremy W. Ellis; Kaci K. VanDalen; Alan B. Franklin

Live bird markets are common in certain regions of the U.S. and in other regions of the world. We experimentally tested the ability of a wild bird influenza A virus to transmit from index animals to naïve animals at varying animal densities in stacked cages in a simulated live bird market. Two and six mallards, five and twelve quail, and six and nine pheasants were used in the low-density and high-density stacks of cages, respectively. Transmission did not occur in the high-density stack of cages likely due to the short duration and relatively low levels of shedding, a dominance of oral shedding, and the lack of transmission to other mallards in the index cage. In the low-density stack of cages, transmission occurred among all species tested, but not among all birds present. Oral and cloacal shedding was detected in waterfowl but only oral shedding was identified in the gallinaceous birds tested. Overall, transmission was patchy among the stacked cages, thereby suggesting that chance was involved in the deposition of shed virus in key locations (e.g., food or water bowls), which facilitated transmission to some birds.


Human–Wildlife Interactions | 2012

The effect of European starlings and ambient air temperature on Salmonella enterica contamination within cattle feed bunks

James C. Carlson; Jeremy W. Ellis; Shelagh K. Tupper; Alan B. Franklin; George M. Linz


PLOS ONE | 2012

Correction: Low-Pathogenic Avian Influenza Viruses in Wild House Mice.

Susan A. Shriner; Kaci K. VanDalen; Nicole L. Mooers; Jeremy W. Ellis; Heather J. Sullivan; J. Jeffrey Root; Angela M. Pelzel; Alan B. Franklin


Archives of Virology | 2017

Low viral doses are sufficient to infect cottontail rabbits with avian influenza A virus.

J. Jeffrey Root; Susan A. Shriner; Jeremy W. Ellis; Kaci K. VanDalen; Heather J. Sullivan

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J. Jeffrey Root

United States Department of Agriculture

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Kaci K. VanDalen

United States Department of Agriculture

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Heather J. Sullivan

United States Department of Agriculture

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Nicole L. Mooers

Animal and Plant Health Inspection Service

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Shelagh K. Tupper

United States Department of Agriculture

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Angela M. Pelzel

Animal and Plant Health Inspection Service

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Colleen T. Webb

Colorado State University

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George M. Linz

United States Department of Agriculture

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