Jin Seo Park

Portable document format file showing the surface models of cadaver whole body.

In the Visible Korean project, 642 three-dimensional (3D) surface models have been built from the sectioned images of a male cadaver. It was recently discovered that popular PDF file enables users to approach the numerous surface models conveniently on Adobe Reader. Purpose of this study was to present a PDF file including systematized surface models of human body as the beneficial contents. To achieve the purpose, fitting software packages were employed in accordance with the procedures. Two-dimensional (2D) surface models including the original sectioned images were embedded into the 3D surface models. The surface models were categorized into systems and then groups. The adjusted surface models were inserted to a PDF file, where relevant multimedia data were added. The finalized PDF file containing comprehensive data of a whole body could be explored in varying manners. The PDF file, downloadable freely from the homepage (http://anatomy.co.kr), is expected to be used as a satisfactory self-learning tool of anatomy. Raw data of the surface models can be extracted from the PDF file and employed for various simulations for clinical practice. The technique to organize the surface models will be applied to manufacture of other PDF files containing various multimedia contents.

Generating useful images for medical applications from the Visible Korean Human

For the Visible Korean Human (VKH), a male cadaver was serially ground off to acquire the serially sectioned images (SSIs) of a whole human body. Thereafter, more than 700 structures in the SSIs were outlined to produce detailed segmented images; the SSIs and segmented images were volume- and surface-reconstructed to create three-dimensional models. For outlining and reconstruction, popular software (Photoshop, MRIcro, Maya, AutoCAD, 3ds max, and Rhino) was mainly used; the technique can be reproduced by other investigators for creating their own images. For refining the segmentation and volume reconstruction, the VOXEL-MAN system was used. The continuously upgraded technique was applied to a female cadavers pelvis to produce the SSIs with 0.1mm sized intervals and 0.1mm x 0.1mm sized pixels. The VKH data, distributed worldwide, encouraged researchers to develop virtual dissection, virtual endoscopy, and virtual lumbar puncture contributing to medical education and clinical practice. In the future, a virtual image library including all the Visible Human Project data, Chinese Visible Human data, and VKH data will hopefully be established where users will be able to download one of the data sets for medical applications.

Browsing Software of the Visible Korean Data Used for Teaching Sectional Anatomy.

The interpretation of computed tomographs (CTs) and magnetic resonance images (MRIs) to diagnose clinical conditions requires basic knowledge of sectional anatomy. Sectional anatomy has traditionally been taught using sectioned cadavers, atlases, and/or computer software. The computer software commonly used for this subject is practical and efficient for students but could be more advanced. The objective of this research was to present browsing software developed from the Visible Korean images that can be used for teaching sectional anatomy. One thousand seven hundred and two sets of MRIs, CTs, and sectioned images (intervals, one millimeter) of a whole male cadaver were prepared. Over 900 structures in the sectioned images were outlined and then filled with different colors to elaborate each structure. Software was developed where four corresponding images could be displayed simultaneously; in addition, the structures in the image data could be readily recognized with the aid of the color‐filled outlines. The software, distributed free of charge, could be a valuable tool to teach medical students. For example, sectional anatomy could be taught by showing the sectioned images with real color and high resolution. Students could then review the lecture by using the sectioned and color‐filled images on their own computers. Students could also be evaluated using the same software. Furthermore, other investigators would be able to replace the images for more comprehensive sectional anatomy. Anat Sci Educ.

Surface Model of the Gastrointestinal Tract Constructed From the Visible Korean

Most currently available three‐dimensional surface models of human anatomic structures have been artistically created to reflect the anatomy being portrayed. We have recently undertaken, as part of our Visible Korean studies, to build objective surface models based on cross‐sectional images of actual human anatomy. Objective of the present study was to elaborate surface models of the GI tract and neighboring structures that are helpful to medical simulation. The GI tract from stomach to anal canal was outlined and reconstructed from sectioned images of the Visible Korean (acomputer database containing the digitized transverse sectional images of a 33‐year‐old Korean man). The outlining procedure was supported by computational filtering and interpolation using commercially available software. The GI tract was divided into several parts, and each of these parts was surface reconstructed and then united with neighboring parts to produce a surface model of the complete GI tract. Surface models of about 100 neighboring structures were also prepared. The surface models produced will hopefully facilitate the development of interactive simulations for a variety of virtual abdominal surgical procedures or other educational programs. In addition, it is hoped that the improved outlining and surface reconstruction techniques described will encourage other researchers to construct similar surface models based on images obtained from different subjects. Clin. Anat. 22:601–609, 2009.

Advanced surface reconstruction technique to build detailed surface models of the liver and neighboring structures from the Visible Korean Human.

Unlike volume models, surface models, which are empty three-dimensional images, have small file size, so that they can be displayed, rotated, and modified in a real time. For the reason, the surface models of liver and neighboring structures can be effectively applied to virtual hepatic segmentectomy, virtual laparoscopic cholecystectomy, and so on. The purpose of this research is to present surface models of detailed structures inside and outside the liver, which promote medical simulation systems. Forty-seven chosen structures were liver structures such as portal triad, hepatic vein, and neighboring structures such as the stomach, duodenum, muscles, bones, and skin. The structures were outlined in the serially sectioned images from the Visible Korean Human to prepare segmented images. From the segmented images, serial outlines of each structure were stacked; on the popular commercial software, advanced surface reconstruction technique was applied to build surface model of the structure. A surface model of the liver was divided into eight models of hepatic segments according to distribution of the portal vein. The surface models will be distributed to encourage researchers to develop the various kinds of medical simulation of the abdomen.

Three-dimensional surface models of detailed lumbosacral structures reconstructed from the Visible Korean.

Unlike volume models, surface models representing hollow, three-dimensional images have a small file size; allowing them to be displayed, rotated, and modified in real time. Therefore, surface models of lumbosacral structures can be effectively used for interactive simulation of, e.g., virtual lumbar puncture, virtual surgery of herniated lumbar discs, and virtual epidural anesthesia. In this paper, we present surface models of extensive lumbosacral structures which can be used in medical simulation systems. One-hundred and thirty-eight chosen structures included the spinal cord, lumbar and sacral nerves, vertebrae, intervertebral discs, ligaments, muscles, arteries, and skin. The structures were outlined in the sectioned images from the Visible Korean. From these outlined images, serial outlines of each structure were stacked. Adopting commercial software (3D-DOCTOR, Maya), an advanced surface reconstruction technique was applied to create a surface model of the structure. In the surface models, we observed the anatomical relationships of the lumbosacral structures (e.g., cauda equina and ligaments) in detail. Additionally, the portions of some spinal nerves that could not be outlined were drawn and added to the surface models. These constructed models will hopefully facilitate development of high quality medical simulation of the lumbosacral region.

Surface models of the male urogenital organs built from the Visible Korean using popular software

Unlike volume models, surface models, which are empty three-dimensional images, have a small file size, so they can be displayed, rotated, and modified in real time. Thus, surface models of male urogenital organs can be effectively applied to an interactive computer simulation and contribute to the clinical practice of urologists. To create high-quality surface models, the urogenital organs and other neighboring structures were outlined in 464 sectioned images of the Visible Korean male using Adobe Photoshop; the outlines were interpolated on Discreet Combustion; then an almost automatic volume reconstruction followed by surface reconstruction was performed on 3D-DOCTOR. The surface models were refined and assembled in their proper positions on Maya, and a surface model was coated with actual surface texture acquired from the volume model of the structure on specially programmed software. In total, 95 surface models were prepared, particularly complete models of the urinary and genital tracts. These surface models will be distributed to encourage other investigators to develop various kinds of medical training simulations. Increasingly automated surface reconstruction technology using commercial software will enable other researchers to produce their own surface models more effectively.

Sectioned Images of the Cadaver Head Including the Brain and Correspondences With Ultrahigh Field 7.0 T MRIs

Unlike computed tomographic images and magnetic resonance images (MRIs), sectioned images of the human body with real color and high resolution have certain advantages in learning and teaching anatomy. Comparisons between sectioned images of the brain and MRIs are useful in many ways. Therefore, we prepared 312 MRIs at ultrahigh field 7.0 T (axial direction 0.4 times 0.4 times 0.4 mm3 voxel size) of a cadaver brain, 2343 sectioned images (axial direction, 0.1 mm intervals, 0.1 times 0.1 mm2 pixel size, and 48 bits color) by serial-sectioning the cadaver head, 234 segmented images in which brain regions were separately delineated (1 mm intervals and 0.1 times 0.1 mm2 pixel size) by outlining 64 head structures in sectioned images. Three-dimensional images of 64 head structures were made by volume reconstruction from sectioned images. In this research, advanced techniques and equipment enabled us to prepare quality 7.0-T MRIs, sectioned images, and segmented images of the head. These images are expected to contribute to our understanding of the topographic neuroanatomy of the head and to aid interpretations of MRIs and CTs of the human brain.

Accessible and Informative Sectioned Images and Surface Models of a Cadaver Head

Abstract The sectioned images and surface models of a cadaver head in the Visible Korean Project would be more beneficial if they were accessible and informative. To this aim, 3 policies were established: (1) the data are promptly obtainable and observable; (2) the graphic data are accompanied by explaining the anatomic terms; and (3) two-dimensional images and three-dimensional models are shown together. According to the policies, the following were attempted. Two hundred thirty-five couples of sectioned images and outlined images (intervals, 1 mm) of the head were prepared. Browsing software was developed where the 2 corresponding images were displayed simultaneously. In addition, the structures in the images were recognized with the aid of automatic labeling. From the outlined images, surface models of 178 head structures were constructed. The two-dimensional surface models including the sectioned images were embedded into the three-dimensional surface models. All the models were categorized into systems and arranged to be inputted to a PDF (portable document format) file. The finalized PDF file containing comprehensive head data could be explored on Adobe Reader. If the user clicked on the surface models, their anatomic names were highlighted. The sectioned images, outlined images, and surface models in the browsing software and PDF file can be downloaded from the homepage (anatomy.co.kr) free of charge. The state-of-the-art graphic information will hopefully assist medical students in learning head anatomy. In addition, the raw data are expected to contribute to the various clinical practice simulations.

Segmentation and surface reconstruction of the detailed ear structures, identified in sectioned images.

The structure of the ear, which intervenes between gross anatomy and histology in size, can be best understood by means of three‐dimensional (3D) surface models on a computer. Furthermore, surface models are the source of interactive simulation for clinical trials, such as tympanoplasty. The objective of this research was to elaborate the surface models of detailed ear structures, which contribute to learning anatomy or the practice of otology. We produced sectioned images of a cadaver head (pixel size, 0.1 mm; 48‐bit color). In the sectioned images, the external, middle, and internal ear structures and other related components were delineated on Photoshop to acquire segmented images at 0.5‐mm intervals. Segmented images of each structure were stacked, and the surface was reconstructed to generate a 3D‐surface model on commercial software. Thirty surface models showed fine ear topographic anatomy (e.g., semicircular ducts), as expected. Herein, we present the corresponding sectioned images, segmented images, and surface models of ear structures that will be released together. It is hoped that these image data will stimulate the development of medical simulations. The efficient technique of segmentation and surface reconstruction enables the manufacture of surface models from other serial images (e.g., CTs and MRIs). Anat Rec, 2011.