Jingqiu Liao

Abundance and diversity of soil petroleum hydrocarbon-degrading microbial communities in oil exploring areas

Alkanes and polycyclic aromatic hydrocarbons (PAHs) are the commonly detected petroleum hydrocarbon contaminants in soils in oil exploring areas. Hydrocarbon-degrading genes are useful biomarks for estimation of the bioremediation potential of contaminated sites. However, the links between environmental factors and the distribution of alkane and PAH metabolic genes still remain largely unclear. The present study investigated the abundances and diversities of soil n-alkane and PAH-degrading bacterial communities targeting both alkB and nah genes in two oil exploring areas at different geographic regions. A large variation in the abundances and diversities of alkB and nah genes occurred in the studied soil samples. Various environmental variables regulated the spatial distribution of soil alkane and PAH metabolic genes, dependent on geographic location. The soil alkane-degrading bacterial communities in oil exploring areas mainly consisted of Pedobacter, Mycobacterium, and unknown alkB-harboring microorganisms. Moreover, the novel PAH-degraders predominated in nah gene clone libraries from soils of the two oil exploring areas. This work could provide some new insights towards the distribution of hydrocarbon-degrading microorganisms and their biodegradation potential in soil ecosystems.

Distribution of Naphthalene Dioxygenase Genes in Crude Oil-Contaminated Soils

Polycyclic aromatic hydrocarbons (PAHs) are one of the major pollutants in soils in oil exploring areas. Biodegradation is the major process for natural elimination of PAHs from contaminated soils. Functional genes can be used as biomarkers to assess the biodegradation potential of indigenous microbial populations. However, little is known about the distribution of PAH-degrading genes in the environment. The links between environmental parameters and the distribution of PAH metabolic genes remain essentially unclear. The present study investigated the abundance and diversity of naphthalene dioxygenase genes in the oil-contaminated soils in the Shengli Oil Field (China). Spatial variations in the density and diversity of naphthalene dioxygenase genes occurred in this area. Four different sequence genotypes were observed in the contaminated soils, with the predominance of novel PAH-degrading genes. Pearson’s correlation analysis illustrated that gene abundance had positive correlations with the levels of total organic carbon and aromatic hydrocarbons, while gene diversity showed a negative correlation with the level of polar aromatics. This work could provide some new insights toward the distribution of PAH metabolic genes and PAH biodegradation potential in oil-contaminated ecosystems.

The importance of neutral and niche processes for bacterial community assembly differs between habitat generalists and specialists

The mechanisms of community assembly are a central focus in the field of microbial ecology. However, to what extent these mechanisms differ in importance by traits of groups is poorly understood. Here we quantified the importance of neutral and niche processes in community assembly for bacteria, habitat specialists and generalists in 21 plateau lakes of China. Results showed that both neutral and niche processes played a critical role in the assembly of entire bacterial communities, shaping a unique biogeographical pattern. A few habitat generalists and many specialists were identified. Interestingly, habitat specialists were only governed by niche process, with seven significant environmental variables-salinity, dissolved oxygen, water transparency, total phosphorus, ammonium-nitrogen, temperature and total nitrogen-independently explaining 40.3% of the biological variation. By contrast, habitat generalists were strongly driven by neutral process, with 50.9% of the variation of detection frequency explained in neutral community model. Only three environmental variables-salinity, total nitrogen and dissolved oxygen-significantly affected the distribution of habitat generalists, independently explaining 13.6% of the variation. Governed by different assembly mechanisms, habitat specialists and generalists presented disparate biogeographical patterns. Our result emphasizes the importance of investigating the bacterial community assembly at more refined levels than entire communities.

Quantification and characterization of naphthenic acids in soils from oil exploration areas in China by GC/MS

Naphthenic acids (NAs) are a toxic complex mixture of carboxylic acids occurring naturally in petroleum. Due to the serious potential risks of NAs towards terrestrial ecology during crude oil exploration and production processes, and the lack of efficient methodologies for extraction and analysis of these compounds, the goal of this study is to detail the development of a routine method for extraction, and quantitative and qualitative analysis of NAs in oil contaminated soils. Solid phase extraction using a MAX cartridge was employed in combination with GC/MS. Ethyl acetate with 2% formic acid used as an elution solvent showed the best recoveries of NAs (98.36–112.35%). The total NA concentration and NA profiles of oil contaminated soil samples from 4 oil fields in China were examined. High concentrations of NAs (maximum, 132.91 mg kg−1) were detected in soils, which implied toxic and estrogenic risks for human and terrestrial organisms. Different profiles of NA mixtures were observed in soils from 4 different oil fields, and evaporation and biodegradation could influence the compounds of NAs. The authors present the first feasible method for analysis of NAs in soil.

Bacterioplankton community responses to key environmental variables in plateau freshwater lake ecosystems: A structural equation modeling and change point analysis

Elevated environmental pressures negatively affect the bacterial community structure. However, little knowledge about the nonlinear responses of spatially related environmental variable across multiple plateau lake ecosystems on bacterioplankton communities has been gathered. Here, we used 454 pyrosequencing of 16S rRNA genes to study the associations of bacterial communities in terms of environmental characteristics as well as the potentially ecological threshold-inducing shifts of the bacterial community structure along the key environmental variables based on hypothesized structural equation models and the SEGMENTED method in 21 plateau lakes. Our results showed that water transparency was the major driving force and that total nitrogen was more significant than total phosphorus in determining the taxon composition of the bacterioplankton community. Significant community threshold estimates for bacterioplankton were observed at 7.36 for pH and 25.6% for the percentage of the agricultural area, while the remarkable change point of the cyanobacteria community structure responding to pH was at 7.74. Furthermore, the findings indicated that increasing nutrient loads can induce a distinct shift in dominance from Proteobacteria to Cyanobacteria, as well as a sharp decrease and adjacent increase when crossing the change point for Actinobacteria and Bacteroidetes along the gradient of the agricultural area.

Cyanobacteria in lakes on Yungui Plateau, China are assembled via niche processes driven by water physicochemical property, lake morphology and watershed land-use

Plateau lakes are important ecosystems with diverse ecological functions. Cyanobacteria play a key role in plateau lakes as primary producers. However, they are threatening when dense blooms occur. Identifying cyanobacteiral biogeography and the mechanism of assembly processes shaping the distribution of cyanobacteria in plateau lakes is critical for understanding cyanobacterial ecology and applying it to lake management. In the present study, the biogeographic pattern and importance of neutral and niche processes in assembly of cyanobacteria in 21 lakes on Yungui Plateau, China were examined. Results showed that cyanobacteria exhibit unique biogeographic pattern, and most of them have a narrow habitat preference in plateau lakes. They were assembled via niche processes driven by water physicochemical property, lake morphology and watershed land-use, which explained 62.4% of the biological variation. Neutral processes were not at play. Water physicochemical property (key variables - dissolved oxygen, salinity, trophic status and pH) was the most dominant driver shaping its unique biogeographic pattern. Watershed land-use especially urban land, water body and agricultural land also exhibited a strong impact on cyanobacterial distribution, followed by lake morphology. As most of the cyanobacteiral genus detected in these plateau lakes were potential toxin-producers, this study indicated that in order to protect waters from toxic-bloom in the future, reducing nutrient loading and land-use practices are two practical approaches in plateau lake management.

Oxidative damage of naphthenic acids on the Eisenia fetida earthworm.

Naphthenic acids (NAs) have been gaining recognition in recent years as potentially harmful environmental contaminants. Few studies have focused on the potential ecotoxicity of NAs to terrestrial environment. In this study, the responses of antioxidant system and lipid peroxidation and DNA damage were investigated after exposing Eisenia fetida to soil contaminated with NAs. The results indicated that NAs induced a significant increase (p < 0.05) in superoxide dismutase and catalase enzyme activities. The glutathione peroxidase enzyme activities were significantly inhibited (p < 0.05) in the medium and high dose treatments. An increase in malondialidehyde indicated that NAs could cause cellular lipid peroxidation in the tested earthworms. The percentage of DNA in the tail of comet assay of coelomocytes as an indication of DNA damage increased after treatment with different doses of NAs, and a dose‐dependent DNA damage of coelomocytes was found. In conclusion, oxidative stress caused by NAs exposure induces physiological responses and genotoxicity on earthworms.