Joanne Nightingale

An Algorithm to Produce Temporally and Spatially Continuous MODIS-LAI Time Series

Ecological and climate models require high-quality consistent biophysical parameters as inputs and validation sources. NASAs moderate resolution imaging spectroradiometer (MODIS) biophysical products provide such data and have been used to improve our understanding of climate and ecosystem changes. However, the MODIS time series contains occasional lower quality data, gaps from persistent clouds, cloud contamination, and other gaps. Many modeling efforts, such as those used in the North American Carbon Program, that use MODIS data as inputs require gap-free data. This letter presents the algorithm used within the MODIS production facility to produce temporally smoothed and spatially continuous biophysical data for such modeling applications. We demonstrate the algorithm with an example from the MODIS-leaf-area-index (LAI) product. Results show that the smoothed LAI agrees with high-quality MODIS LAI very well. Higher R-squares and better linear relationships have been observed when high-quality retrieval in each individual tile reaches 40% or more. These smoothed products show similar data quality to MODIS high-quality data and, therefore, can be substituted for low-quality retrievals or data gaps.

An Enhanced TIMESAT Algorithm for Estimating Vegetation Phenology Metrics From MODIS Data

An enhanced TIMESAT algorithm was developed for retrieving vegetation phenology metrics from 250 m and 500 m spatial resolution Moderate Resolution Imaging Spectroradiometer (MODIS) vegetation indexes (VI) over North America. MODIS VI data were pre-processed using snow-cover and land surface temperature data, and temporally smoothed with the enhanced TIMESAT algorithm. An objective third derivative test was applied to define key phenology dates and retrieve a set of phenology metrics. This algorithm has been applied to two MODIS VIs: Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI). In this paper, we describe the algorithm and use EVI as an example to compare three sets of TIMESAT algorithm/MODIS VI combinations: (a) original TIMESAT algorithm with original MODIS VI, (b) original TIMESAT algorithm with pre-processed MODIS VI, and (c) enhanced TIMESAT and pre-processed MODIS VI. All retrievals were compared with ground phenology observations, some made available through the National Phenology Network. Our results show that for MODIS data in middle to high latitude regions, snow and land surface temperature information is critical in retrieving phenology metrics from satellite observations. The results also show that the enhanced TIMESAT algorithm can better accommodate growing season start and end dates that vary significantly from year to year. The TIMESAT algorithm improvements contribute to more spatial coverage and more accurate retrievals of the phenology metrics. Among three sets of TIMESAT/MODIS VI combinations, the start of the growing season metric predicted by the enhanced TIMESAT algorithm using pre-processed MODIS VIs has the best associations with ground observed vegetation greenup dates.

Ecosystem process models at multiple scales for mapping tropical forest productivity

Quantifying mass and energy exchanges within tropical forests is essential for understanding their role in the global carbon budget and how they will respond to perturbations in climate. This study reviews ecosystem process models designed to predict the growth and productivity of temperate and tropical forest ecosystems. Temperate forest models were included because of the minimal number of tropical forest models. The review provides a multiscale assessment enabling potential users to select a model suited to the scale and type of information they require in tropical forests. Process models are reviewed in relation to their input and output parameters, minimum spatial and temporal units of operation, maximum spatial extent and time period of application for each organization level of modelling. Organizational levels included leaf-tree, plot-stand, regional and ecosystem levels, with model complexity decreasing as the time-step and spatial extent of model operation increases. All ecosystem models are simplified versions of reality and are typically aspatial. Remotely sensed data sets and derived products may be used to initialize, drive and validate ecosystem process models. At the simplest level, remotely sensed data are used to delimit location, extent and changes over time of vegetation communities. At a more advanced level, remotely sensed data products have been used to estimate key structural and biophysical properties associated with ecosystem processes in tropical and temperate forests. Combining ecological models and image data enables the development of carbon accounting systems that will contribute to understanding greenhouse gas budgets at biome and global scales.

Daily MODIS 500 m reflectance anisotropy direct broadcast DB products for monitoring vegetation phenology dynamics

Land surface vegetation phenology is an efficient bio-indicator for monitoring ecosystem variation in response to changes in climatic factors. The primary objective of the current article is to examine the utility of the daily MODIS 500 m reflectance anisotropy direct broadcast (DB) product for monitoring the evolution of vegetation phenological trends over selected crop, orchard, and forest regions. Although numerous model-fitted satellite data have been widely used to assess the spatio-temporal distribution of land surface phenological patterns to understand phenological process and phenomena, current efforts to investigate the details of phenological trends, especially for natural phenological variations that occur on short time scales, are less well served by remote sensing challenges and lack of anisotropy correction in satellite data sources. The daily MODIS 500 m reflectance anisotropy product is employed to retrieve daily vegetation indices (VI) of a 1 year period for an almond orchard in California and for a winter wheat field in northeast China, as well as a 2 year period for a deciduous forest region in New Hampshire, USA. Compared with the ground records from these regions, the VI trajectories derived from the cloud-free and atmospherically corrected MODIS Nadir BRDF (bidirectional reflectance distribution function) adjusted reflectance (NBAR) capture not only the detailed footprint and principal attributes of the phenological events (such as flowering and blooming) but also the substantial inter-annual variability. This study demonstrates the utility of the daily 500 m MODIS reflectance anisotropy DB product to provide daily VI for monitoring and detecting changes of the natural vegetation phenology as exemplified by study regions comprising winter wheat, almond trees, and deciduous forest.

On Line Validation Exercise (OLIVE): A Web Based Service for the Validation of Medium Resolution Land Products. Application to FAPAR Products

The OLIVE (On Line Interactive Validation Exercise) platform is dedicated to the validation of global biophysical products such as LAI (Leaf Area Index) and FAPAR (Fraction of Absorbed Photosynthetically Active Radiation). It was developed under the framework of the CEOS (Committee on Earth Observation Satellites) Land Product Validation (LPV) sub-group. OLIVE has three main objectives: (i) to provide a consistent and centralized information on the definition of the biophysical variables, as well as a description of the main available products and their performances (ii) to provide transparency and traceability by an online validation procedure compliant with the CEOS LPV and QA4EO (Quality Assurance for Earth Observation) recommendations (iii) and finally, to provide a tool to benchmark new products, update product validation results and host new ground measurement sites for accuracy assessment. The functionalities and algorithms of OLIVE are described to provide full transparency of its procedures to the community. The validation process and typical results are illustrated for three FAPAR products: GEOV1 (VEGETATION sensor), MGVIo (MERIS sensor) and MODIS collection 5 FPAR. OLIVE is available on the European Space Agency CAL/VAL portal), including full documentation, validation exercise results, and product extracts.

Vegetation Phenology Metrics Derived from Temporally Smoothed and Gap-Filled MODIS Data

A set of phenology metrics have been estimated based on temporally smoothed and spatially gap-filled Moderate Resolution Imaging Spectroradiometer (MODIS) vegetation indices (VI) over the North American continent. The phenology algorithm has been applied to three MODIS vegetation indices: Leaf Area Index (LAI), Normalized Difference Vegetation Index (NDVI), and Enhanced Vegetation Index (EVI). The spatial coverage of this phenology data is more complete than other remotely sensed data based phenology products. This is because of the quality of the smoothed and gap-filled MODIS data that was produced using an enhanced version of the TIMESAT algorithm. In this paper, we review the enhanced TIMESAT algorithm and related smoothing, gap filling and phenology algorithm, and compare the phenology metrics estimated from NDVI and EVI. Our results show differences in phenology inferred from EVI versus NDVI. The magnitude of the difference depends on the land cover type and could be used to improve the land cover classification accuracy.

Assessment of Relationships Between Precipitation and Satellite Derived Vegetation Condition Within South Australia

The normalised difference vegetation index (NDVI) has evolved as a primary tool for monitoring continental-scale vegetation changes and interpreting the impact of short to long-term climatic events on the biosphere. The objective of this research was to assess the nature of relationships between precipitation and vegetation condition, as measured by the satellite-derived NDVI within South Australia. The correlation, timing and magnitude of the NDVI response to precipitation were examined for different vegetation formations within the State (forest, scrubland, shrubland, woodland and grassland). Results from this study indicate that there are strong relationships between precipitation and NDVI both spatially and temporally within South Australia. Differences in the timing of the NDVI response to precipitation were evident among the five vegetation formations. The most significant relationship between rainfall and NDVI was within the forest formation. Negative correlations between NDVI and precipitation events indicated that vegetation green-up is a result of seasonal patterns in precipitation. Spatial patterns in the average NDVI over the study period closely resembled the boundaries of the five classified vegetation formations within South Australia. Spatial variability within the NDVI data set over the study period differed greatly between and within the vegetation formations examined depending on the location within the state. ACRONYMS AVHRR Advanced Very High Resolution Radiometer ENVSAEnvironments of South Australia EOS Terra-Earth Observing System EVIEnhanced Vegetation Index MODIS Moderate Resolution Imaging Spectro-radiometer MVC Maximum Value Composite NDVINormalised Difference Vegetation Index NIRNear Infra-Red NOAANational Oceanic and Atmospheric Administration SPOT Systeme Pour l’Observation de la Terre. [ABSTRACT FROM AUTHOR]

Temporally smoothed and gap-filled MODIS land products for carbon modelling: application of the ƒPAR product

TIMESAT software is used to produce a temporally and spatially Gap‐Filled and Smoothed (GFS) version of the MODIS (Moderate Resolution Imaging Spectro‐radiometer) fPAR (fraction of absorbed photosynthetically active radiation) product (MOD15). We apply this new ƒPAR product within two commonly used carbon and vegetation productivity models, CASA (Carnegie‐Ames‐Stanford Approach) and the MODIS GPP (Gross Primary Production) algorithm (MOD17). The GFS product removes noise present within the original MOD15 fPAR dataset, yet is comparable to the linearly interpolated UMT (University of Montana) fPAR used in the MOD17 algorithm. However, the GSF data provides a realistic fPAR time‐series in relation to magnitude and seasonality associated with radiation in regions where persistent cloud cover is an issue. It is available for North America and the northern part of South America covering the Amazon basin for the MODIS acquisition period (2000–2005).

Evaluation of the Range Accuracy and the Radiometric Calibration of Multiple Terrestrial Laser Scanning Instruments for Data Interoperability

Terrestrial laser scanning (TLS) data provide 3-D measurements of vegetation structure and have the potential to support the calibration and validation of satellite and airborne sensors. The increasing range of different commercial and scientific TLS instruments holds challenges for data and instrument interoperability. Using data from various TLS sources will be critical to upscale study areas or compare data. In this paper, we provide a general framework to compare the interoperability of TLS instruments. We compare three TLS instruments that are the same make and model, the RIEGL VZ-400. We compare the range accuracy and evaluate the manufacturer’s radiometric calibration for the uncalibrated return intensities. Our results show that the range accuracy between instruments is comparable and within the manufacturer’s specifications. This means that the spatial XYZ data of different instruments can be combined into a single data set. Our findings demonstrate that radiometric calibration is instrument specific and needs to be carried out for each instrument individually before including reflectance information in TLS analysis. We show that the residuals between the calibrated reflectance panels and the apparent reflectance measured by the instrument are greatest for highest reflectance panels (residuals ranging from 0.058 to 0.312).

Assessing Honey Bee Equilibrium Range and Forage Supply using Satelite-Derived Phenology

Two important and highly publicized issues regarding honey bees are impacting agricultural pollination and honey production in the United States. These are: (1) the increasing presence of the invasive Africanized Honey Bee (AHB); and (2) the spread of pests and diseases within managed European Honey Bee (EHB) populations that cause major loss of colonies (of which Colony Collapse Disorder (CCD) is the most recent). The primary objective of this research is to improve prediction of the equilibrium range of both the AHB and EHB within the U.S, and to determine the impact of both urbanization and climate change on this equilibrium range. This will be achieved through integration of: climate data; scale hive defined nectar flow measurements; nectar and pollen source distributions; as well as satellite-derived vegetation phenology.