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Dive into the research topics where John B. Geddes is active.

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Featured researches published by John B. Geddes.


Annals of Biomedical Engineering | 2005

Oscillations in a simple microvascular network.

Russell T. Carr; John B. Geddes; Fan Wu

We have identified the simplest topology that will permit spontaneous oscillations in a model of microvascular blood flow that includes the plasma skimming effect and the Fahraeus–Lindqvist effect and assumes that the flow can be described by a first-order wave equation in blood hematocrit. Our analysis is based on transforming the governing partial differential equations into delay differential equations and analyzing the associated linear stability problem. In doing so we have discovered three dimensionless parameters, which can be used to predict the occurrence of nonlinear oscillations. Two of these parameters are related to the response of the hydraulic resistances in the branches to perturbations. The other parameter is related to the amount of time necessary for the blood to pass through each of the branches. The simple topology used in this study is much simpler than networks found in vivo. However, we believe our analysis will form the basis for understanding more complex networks.


Siam Journal on Applied Dynamical Systems | 2007

The Onset of Oscillations in Microvascular Blood Flow

John B. Geddes; Russell T. Carr; Nathaniel Karst; Fan Wu

We explore the stability of equilibrium solution(s) of a simple model of microvascular blood flow in a two-node network. The model takes the form of convection equations for red blood cell concentration, and contains two important rheological effects—the Fahraeus–Lindqvist effect, which governs viscosity of blood flow in a single vessel, and the plasma skimming effect, which describes the separation of red blood cells at diverging nodes. We show that stability is governed by a linear system of integral equations, and we study the roots of the associated characteristic equation in detail. We demonstrate using a combination of analytical and numerical techniques that it is the relative strength of the Fahraeus–Lindqvist effect and the plasma skimming effect which determines the existence of a set of network parameter values which lead to a Hopf bifurcation of the equilibrium solution. We confirm these predictions with direct numerical simulation and suggest several areas for future research and application.


Chaos | 2010

Blood flow in microvascular networks: A study in nonlinear biology.

John B. Geddes; Russell T. Carr; Fan Wu; Yingyi Lao; Meaghan Maher

Plasma skimming and the Fahraeus-Lindqvist effect are well-known phenomena in blood rheology. By combining these peculiarities of blood flow in the microcirculation with simple topological models of microvascular networks, we have uncovered interesting nonlinear behavior regarding blood flow in networks. Nonlinearity manifests itself in the existence of multiple steady states. This is due to the nonlinear dependence of viscosity on blood cell concentration. Nonlinearity also appears in the form of spontaneous oscillations in limit cycles. These limit cycles arise from the fact that the physics of blood flow can be modeled in terms of state dependent delay equations with multiple interacting delay times. In this paper we extend our previous work on blood flow in a simple two node network and begin to explore how topological complexity influences the dynamics of network blood flow. In addition we present initial evidence that the nonlinear phenomena predicted by our model are observed experimentally.


Physical Review E | 2010

Bistability in a simple fluid network due to viscosity contrast

John B. Geddes; Brian D. Storey; David Gardner; Russell T. Carr

We study the existence of multiple equilibrium states in a simple fluid network using Newtonian fluids and laminar flow. We demonstrate theoretically the presence of hysteresis and bistability, and we confirm these predictions in an experiment using two miscible fluids of different viscosity-sucrose solution and water. Possible applications include blood flow, microfluidics, and other network flows governed by similar principles.


Siam Journal on Applied Dynamical Systems | 2003

Pulse Dynamics in an Actively Mode-Locked Laser

John B. Geddes; William J. Firth; Kelly Black

We consider pulse formation dynamics in an actively mode-locked laser. We show that an amplitude-modulated laser is subject to large transient growth and we demonstrate that at threshold the transient growth is precisely the Petermann excess noise factor for a laser governed by a nonnormal operator. We also demonstrate an exact reduction from the governing PDEs to a low-dimensional system of ODEs for the parameters of an evolving pulse. A linearized version of these equations allows us to find analytical expressions for the transient growth below threshold. We also show that the nonlinear system collapses onto an appropriate fixed point, and thus in the absence of noise the ground-mode laser pulse is stable. We demonstrate numerically that, in the presence of a continuous noise source, however, the laser destabilizes and pulses are repeatedly created and annihilated.


Physics of Fluids | 2013

Laminar Flow of Two Miscible Fluids in a Simple Network

Casey M. Karst; Brian D. Storey; John B. Geddes

When a fluid comprised of multiple phases or constituents flows through a network, nonlinear phenomena such as multiple stable equilibrium states and spontaneous oscillations can occur. Such behavior has been observed or predicted in a number of networks including the flow of blood through the microcirculation, the flow of picoliter droplets through microfluidic devices, the flow of magma through lava tubes, and two-phase flow in refrigeration systems. While the existence of nonlinear phenomena in a network with many inter-connections containing fluids with complex rheology may seem unsurprising, this paper demonstrates that even simple networks containing Newtonian fluids in laminar flow can demonstrate multiple equilibria. The paper describes a theoretical and experimental investigation of the laminar flow of two miscible Newtonian fluids of different density and viscosity through a simple network. The fluids stratify due to gravity and remain as nearly distinct phases with some mixing occurring only by...


Bellman Prize in Mathematical Biosciences | 2010

Multiple Equilibrium States in a Micro-Vascular Network

David Gardner; Yiyang Li; Benjamin Small; John B. Geddes; Russell T. Carr

We use a simple model of micro-vascular blood flow to explore conditions that give rise to multiple equilibrium states in a three-node micro-vascular network. The model accounts for two primary rheological effects: the Fåhraeus-Lindqvist effect, which describes the apparent viscosity of blood in a vessel, and the plasma skimming effect, which governs the separation of red blood cells at diverging nodes. We show that multiple equilibrium states are possible, and we use our analytical and computational tools to design an experiment for validation.


frontiers in education conference | 2006

Work in Progress: Understanding Discomfort: Student Responses to Self-Direction

Jonathan Stolk; Mark Somerville; John B. Geddes; Robert Martello

The literature consistently reports that students express some degree of discomfort when they are thrown into self-directed learning environments. In this paper, we present the preliminary results of an investigation of the causes of student discomfort in several different self-directed project-based courses. Our results suggest that student motivation and opportunities for the development of deep understanding and transferable skills are important in creating a positive self-directed learning experience. Negative experiences and student discomfort in self-directed environments may stem from problems with self-regulation, low self-perceptions of content learning, lack of personal engagement with the topic, and difficulties related to the social learning environment


Siam Journal on Applied Dynamical Systems | 2014

Spontaneous Oscillations in Simple Fluid Networks

Nathaniel Karst; Brian D. Storey; John B. Geddes

Nonlinear phenomena including multiple equilibria and spontaneous oscillations are common in fluid networks containing either multiple phases or constituent flows. In many systems, such behavior might be attributed to the complicated geometry of the network, the complex rheology of the constituent fluids, or, in the case of microvascular blood flow, biological control. In this paper we investigate two examples of a simple three-node fluid network containing two miscible Newtonian fluids of differing viscosities, the first modeling microvascular blood flow and the second modeling stratified laminar flow. We use a combination of analytic and numerical techniques to identify and track saddle-node and Hopf bifurcations through the large parameter space. In both models, we document sustained spontaneous oscillations and, for an experimentally relevant example of parameter analysis, investigate the sensitivity of these oscillations to changes in the viscosity contrast between the constituent fluids and the inlet flow rates. For the case of stratified laminar flow, we detail a physically realizable set of network parameters that exhibit rich dynamics. The tools and results developed here are general and could be applied to other physical systems.


Mathematical Medicine and Biology-a Journal of The Ima | 2011

Stability of a Microvessel Subject to Structural Adaptation of Diameter and Wall Thickness

Ilari Shafer; Rachel Nancollas; Morgan Boes; Alisha L. Sieminski; John B. Geddes

Vascular adaptation--or structural changes of microvessels in response to physical and metabolic stresses--can influence physiological processes like angiogenesis and hypertension. To better understand the influence of these stresses on adaptation, Pries et al. (1998, 2001a,b, 2005) have developed a computational model for microvascular adaptation. Here, we reformulate this model in a way that is conducive to a dynamical systems analysis. Using th ese analytic methods, we determine the equilibrium geometries of a single vessel under different conditions and classify its type of stability. We demonstrate that our closed-form solution for vessel geometry exhibits the same regions of stability as the numerical predictions of Pries et al. (2005, Remodeling of blood vessels: responses of diameter and wall thickness to hemodynamic and metabolic stimuli. Hypertension, 46, 725-731). Our analytic approach allows us to predict the existence of limit-cycle oscillations and to extend the model to consider a fixed pressure across the vessel in addition to a fixed flow. Under these fixed pressure conditions, we show that the vessel stability is affected and that the multiple equilibria can exist.

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Brian D. Storey

Franklin W. Olin College of Engineering

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Jonathan Stolk

Franklin W. Olin College of Engineering

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Russell T. Carr

University of New Hampshire

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Mark Somerville

Franklin W. Olin College of Engineering

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Robert Martello

Franklin W. Olin College of Engineering

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Fan Wu

Medical College of Wisconsin

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Alisha L. Sieminski

Franklin W. Olin College of Engineering

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David Gardner

Franklin W. Olin College of Engineering

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