John D. Toth

Soil nitrogen mineralization during laboratory incubation: dynamics and model fitting

Abstract Soil nitrogen mineralization kinetics were studied for eight treatments of two soils in an aerobic long-term (30 wk) incubation experiment. Soil mineral-N (NH 4 + and NO 3 − ) in the leachates was measured every week during the first 9 wk and every 2 or 3 wk thereafter. The NH 4 + percentage of the mineral-N ranged between 85 and 99% for all treatments in the first week of incubation and remained high (> 80%) in several treatments until the end of wk 4. Starting at wk 7, NH 4 + concentrations were negligible in all treatments. The net N mineralization rate was 15–24 mg N kg −1 wk −1 during the first 4–6 wk and 2–5 mg N kg −1 wk −1 from wk 8 until the end of the incubation. Four models, (i) a one-component, first-order exponential model (the single model), (ii) a two-component, first-order exponential model (the double model), (iii) a one-component, first-order exponential model including a constant term (the special model), and (iv) a hyperbolic model, were fit to the cumulative mineral-N vs time data using a non-linear regression procedure. The goodness of fit of the four models depended on the duration of incubation. With 30 wk data, the double and special models were significantly better than the other two models; with the first 15 wk data, the four models had essentially the same goodness of fit for seven out of eight treatments. The values of the regression parameters derived from each model also depended on the incubation duration. Results from this study show that the pool size and mineralization rate parameters in the different models are merely mathematically-defined quantities obtained from the kinetic analysis of the net N mineralization and do not represent any rigorously-defined pool sizes of potentially-mineralizable N and their mineralization rate constants in the soils.

Tillage effect on seasonal nitrogen availability in corn supplied with legume green manures

It has been shown that legume green manures have great potential for replacing a substantial amount of the N fertilizer required for corn (Zea mays L.) production. An experiment was conducted in central Pennsylvania (USA) to study seasonal fluctuation of nitrogen (N) availability in corn with conventional tillage (CT) and no-till (NT) following red clover (Trifolium pratense L.) and hairy vetch (Vicia villosa Roth) green manures double-cropped with winter wheat (Triticum aestivum L.). Samples of corn, weeds, and soil were taken periodically and analyzed for total N content in plant tissue and soil nitrate-N content. The sum of plant N (corn plus weed) and soil nitrate-N in the upper 45 cm profile was used as an indicator of total available N. Under CT, total available N increased rapidly upon legume incorporation and reached 80% of the maximum within 4 weeks. Under NT, total available N increased steadily after the legumes were killed with herbicides and reached a maximum within 7 to 8 weeks. Seasonal corn N accumulations with the legume N source were similar to those where corn followed fallow with 200 kg N ha−1 fertilizer with CT, but were less than those in the same fallow 200 kg N ha−1 treatment with no-till. Dry weather conditions together with weed competition reduced N availability to the no-till corn compared to the CT treatments. The seasonal fluctuations of total available N and corn N uptake suggest good synchronization between N availability from the legume green manures and N accumulation by corn plants in both tillage systems under the conditions of this study.

A comparison of phosphorus speciation and potential bioavailability in feed and feces of different dairy herds using 31p nuclear magnetic resonance spectroscopy.

An experiment was conducted to examine how potential phosphorus (P) bioavailability (inferred from speciation) differs in feed and feces collected in spring from four dairy herds representing different management systems: (i) total confinement with cows fed total mixed ration (TMR), (ii) total confinement with TMR plus P mineral supplement, (iii) a hybrid of confinement with TMR and pastoral grazing, and (iv) predominantly grazing with supplemental grains. A treatment was included that air dried feces to simulate conditions after dung deposition. Wet chemical techniques and solution (31)P nuclear magnetic resonance spectroscopy ((31)P-NMR) were used to identify P concentrations and compounds present in water (a surrogate for P in overland flow), dilute acid (0.012 M HCl, an estimate of P utilization by cattle), or NaOH-EDTA (a solution that maximizes the organic P extraction) extracts of feed and feces. In general, P concentration in feces paralleled P in feed. Air drying feces decreased water-extractable P by 13 to 61% largely due to a decrease in orthophosphate, whereas NaOH-EDTA-extractable P increased by 18 to 48%. Analysis of dilute HCl was unsuccessful due to orthophosphate precipitation when pH was adjusted to 12 for (31)P-NMR. In water extracts, more P was in bioavailable diester-P forms, undetectable by colorimetry, than in NaOH-EDTA extracts. In feed, orthophosphate dominated (46-70%), but myo-IHP varied with feed (<10% in forage samples but 43% in a TMR sample). The proportion of myo-IHP decreased in feces compared with feed via mineralization but decreased less in systems with a greater proportion of available P input (e.g., orthophosphate and phospholipids). Feed and drying effect the concentrations and forms of P in feces and their potential impact on soil and water quality. Although bioavailable P in feces from pasture-based and confined systems can be similar in spring, dung-P is distributed on a lower kg P ha(-1) rate in grazing systems. The best method to mitigate P loss from feces is to decrease P in feed.

Evaluation of nitrogen version of leachm for predicting nitrate leaching

The abilities of the Richards and convectiondispersion equations approach (LEACHNR) and the capacity model approach (LEACHNA) of the nitrogen version (LEACHN) of the LEACHM model to simulate nitrate leaching were evaluated using field data from a 5-year nitrate leaching experiment conducted in central Pennsylvania on Hagerstown silt loam soil (fine, mixed, mesic, Typic Hapludalf). Nitrate leaching losses from N-fertilized and manured corn below the 1.2-m depth were measured with zerotension pan lysimeters. Three N-fertilized and manured treatments for 1988–1989, 1989–1990, and 1990–1991 and two N-fertilized treatments for 1991–1992 and 1992–1993 were used from the leaching experiment to evaluate both approaches of LEACHN. The individual monthly simulations of nitrate leaching were compared with the mean of pan efficiency corrected-measured data for these 5 years. Both approaches of the model were calibrated to the site conditions using the data of 1989–1990 and were then evaluated using 1988–1989, 1990–1991, 1991–1992 and 1992–1993 nitrate leaching data. Simulated results for the calibration year for both models were reasonably accurate (31 of 36 months simulated within the experimental 95% confidence limits). The statistical analysis used in this study indicated that both LEACHNA and LEACHNR adequately (91 to 120 months within the 95% confidence limits) predicted nitrate leaching below the 1.2-m depth for treatments in the refinement years. Much of the simulation error in some treatments in the refinement years seemed to be related to the sub-routine controlling soil nitrogen transformation processes and their rate constants in the model. The large deviations in NO−3-N leached in some winter months may be related, in part, to problems with simulated water flow associated with the frozen soil conditions and snow accumulation. The addition of a dual-pore water flow option (LEACHNA) to the nitrogen version of LEACHM did not improve prediction of nitrate leaching beyond the rooting zone of corn under Pennsylvania conditions.

Development of a quicktest kit method to measure soil nitrate

Abstract A soil nitrate test taken about 4 weeks after emergence has been proposed to predict the corn (Zea mays L.) yield reponse to sidedress N fertilizer applications. Use of this test would be increased if the soil analysis and interpretation could be done rapidly, since the fertilizer must be applied within one to two weeks after sampling. Because of this time constraint, mailing samples to a centralized laboratory is unattractive to many farmers. One potential solution to this problem would be to have the analysis done locally using a quicktest kit. A proposed method for analyzing soil samples for nitrate was adapted for use under field conditions. The method is based on the analysis of soil extracts using nitrate sensitive test strips and a hand held reflectometer. Two soil measuring methods, a conventional scooping method and a weighing procedure using an inexpensive balance, were evaluated for inclusion in the test kit. Evaluation was based on the ability of the methods to measure 20 g of soil. F...

Nitrogen Fertilizer Rate and Crop Management Effects on Nitrate Leaching from an Agricultural Field in Central Pennsylvania

Eighteen pan lysimeters were installed at a depth of 1.2 m in a Hagerstown silt loam soil in a corn field in central Pennsylvania in 1988. In 1995, wick lysimeters were also installed at 1.2 m depth in the same access pits. Treatments have included N fertilizer rates, use of manure, crop rotation (continuous corn, corn-soybean, alfalfa-corn), and tillage (chisel plow-disk, no-till). The leachate data were used to evaluate a number of nitrate leaching models. Some of the highlights of the 11 years of results include the following: 1) growing corn without organic N inputs at the economic optimum N rate (EON) resulted in NO3-N concentrations of 15 to 20 mg l in leachate; 2) use of manure or previous alfalfa crop as partial source of N also resulted in 15 to 20 mg l of NO3-N in leachate below corn at EON; 3) NO3-N concentration in leachate below alfalfa was approximately 4 mg l; 4) NO3-N concentration in leachate below soybeans following corn was influenced by fertilizer N rate applied to corn; 5) the mass of NO3-N leached below corn at the EON rate averaged 90 kg N ha (approx. 40% of fertilizer N applied at EON); 6) wick lysimeters collected approximately 100% of leachate vs. 40–50% collected by pan lysimeters. Coefficients of variation of the collected leachate volumes for both lysimeter types were similar; 7) tillage did not markedly affect nitrate leaching losses; 8) tested leaching models could accurately predict leachate volumes and could be calibrated to match nitrate leaching losses in calibration years, but only one model (SOILN) accurately predicted nitrate leaching losses in the majority of validation treatment years. Apparent problems with tested models: there was difficulty estimating sizes of organic N pools and their transformation rates, and the models either did not include a macropore flow component or did not handle macropore flow well.

Short communication: Survey of animal-borne pathogens in the farm environment of 13 dairy operations

A survey was conducted on 13 dairies to determine the occurrence of 5 animal-borne pathogens (Salmonella enterica, Escherichia coli O157:H7, Campylobacter jejuni, Mycobacterium avium ssp. paratuberculosis, and Cryptosporidium parvum) and their distributions across farm elements (feces, bedding, milk filters, stored manure, field soil, and stream water). Presence of C. parvum was measured only in feces and stored manure. All but one farm were positive for at least one pathogen species, and 5 farms were positive for 3 species. Escherichia coli O157:H7 was detected on 6 farms and in all farm elements, including milk filters. Mycobacterium avium ssp. paratuberculosis was detected on 10 of 13 farms and in all farm elements except for milk filters. Salmonella enterica and C. jejuni were detected at lower frequencies and were not identified in soil, stream water, or milk filters on any of the 13 farms. Cryptosporidium parvum was detected in feces but not in stored manure. Stored manure had the highest occurrence of pathogens (73%), followed by feces (50%), milk filters, bedding, soil, and water (range from 23 to 31%). Association of pathogen presence with farm management factors was examined by t-test; however, the small number of study farms and samples may limit the scope of inference of the associations. Pathogens had a higher prevalence in maternity pen bedding than in calf bedding, but total pathogen occurrence did not differ in calf compared with lactating cow feces or in soils with or without manure incorporation. Herd size and animal density did not appear to have a consistent effect on pathogen occurrence. The extent of pathogen prevalence and distribution on the farms indicates considerable public health risks associated with not only milk and meat consumption and direct animal contact, but also potential dissemination of the pathogens into the agroecosystem.

Evaluation of Free-Stall Mattress Bedding Treatments to Reduce Mastitis Bacterial Growth

Bacterial counts were compared in free-stall mattresses and teat ends exposed to 5 treatments in a factorial study design on 1 dairy farm. Mattresses in five 30-cow groups were subjected to 1 of 5 bedding treatments every other day: 0.5 kg of hydrated limestone, 120 mL of commercial acidic conditioner, 1 kg of coal fly ash, 1 kg of kiln-dried wood shavings, and control (no bedding). Counts of coliforms, Klebsiella spp., Escherichia coli, and Streptococcus spp. were lowest on mattresses bedded with lime. Mattresses bedded with the commercial acidic conditioner had the next lowest counts for coliforms, Klebsiella spp., and Streptococcus spp. Wood shavings and the no-bedding control had the highest counts for coliform and Klebsiella spp. Compared with wood shavings or control, fly ash reduced the counts of coliforms, whereas for the other 3 bacterial groups, the reduction was not always significant. Streptococcus spp. counts were greatest in the control group and did not differ among the shavings and fly ash groups. Teat swab results indicated that hydrated lime was the only bedding treatment that significantly decreased the counts of both coliforms and Klebsiella spp. There were no differences in Streptococcus spp. numbers on the teats between any of the bedding treatments. Bacterial populations grew steadily on mattresses and were generally higher at 36 to 48 h than at 12 to 24 h, whereas bacterial populations on teats grew rapidly by 12 h and then remained constant. Hydrated lime was the only treatment that significantly reduced bacterial counts on both mattresses and teat ends, but it caused some skin irritation.

Survival characteristics of Salmonella enterica serovar Newport in the dairy farm environment

Multi-drug resistant (MDR) Salmonella enterica serovar Newport (S. Newport) has established a reservoir in dairy cattle. Infected herds suffer significant mortality in both adult and young animals, posing a considerable economic loss to producers. Land application of manure from infected animals may further spread the pathogen into the agroecosystem, causing public health concerns. Previous work by our group demonstrated that the organism persisted in manure and manured soil for 6 to 10 mo under laboratory conditions. In the present study, we determined the survival characteristics of MDR S. Newport in a dairy lagoon, compost pile, and soil of a grass field under natural conditions using environmental sentinel chambers with an initial concentration of S. Newport around 7 log(10) per gram. In the static compost pile at 64 °C, S. Newport was eliminated within 18 h. In the dairy effluent lagoon, the pathogen survived for >137 d, whereas in the field soil, the organisms persisted for over 276 d. The survival of MDR S. Newport in both the lagoon and field soil followed a pattern of (1) an increase or plateau for a few days, (2) log-linear decline for 6 to 13 wk, and (3) a long tailing phase at low and variable concentration for 4 to 9 mo. Log reduction times (days required for 90% decrease in concentration) based on the log-linear decline phase were 7 d in the lagoon and 14 to 20 d in the soil. Conditions leading to faster inactivation during the initial phase do not necessarily translate into a quicker elimination of the pathogen. Regression models of the log-linear phase may be inaccurate for estimating complete pathogen elimination.

A fecal test for assessing phosphorus overfeeding on dairy farms: evaluation using extensive farm data.

Managing P on dairy farms requires the assessment and monitoring of P status of the animals so that potential overfeeding may be minimized. Numerous published studies have demonstrated that for lactating dairy cows, increasing P concentrations in diets led to greater P excretion in feces. More recent work reported that inorganic P (P(i)) in 0.1% HCl extracts of feces (fecal extract P(i), g/kg) closely reflects dietary P changes. This has led to the proposal that 0.1% HCl fecal extract P(i) may serve as an indicator of the animals P status (adequate or excessive) when compared with a benchmark value. Here, we present the results of an extensive evaluation of the proposed fecal P indicator test. With samples (n=575) from >90 farms, fecal total P (TP, g/kg) and fecal extract P were positively correlated with dietary P (X, g/kg): TP=1.92X - 0.17 (R2=0.36); fecal extract P=1.82X - 2.54 (R2=0.46). Fecal extract P was responsive to dietary P changes, whereas the remaining P, calculated as TP minus fecal extract P, was not. A provisional benchmark value of fecal extract P representing near-adequate P status was set at 4.75g/kg. Assessment of the farm data using the benchmark indicated that 316 out of 575 data points were associated with possible P overfeeding. Advantages of the fecal-based test over feed-based analysis to assess P status are discussed. The fecal extract P method is a simple and practical test that can be used as an assessment tool for helping dairy producers improve P management and reduce their environmental footprint.