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Featured researches published by John S Ramsey.


Genome Biology | 2010

Immunity and other defenses in pea aphids, Acyrthosiphon pisum

Nicole M. Gerardo; Boran Altincicek; Caroline Anselme; Hagop S. Atamian; Seth M. Barribeau; Martin de Vos; Elizabeth J. Duncan; Jay D. Evans; Toni Gabaldón; Murad Ghanim; Adelaziz Heddi; Isgouhi Kaloshian; Amparo Latorre; Andrés Moya; Atsushi Nakabachi; Benjamin J. Parker; Vincente Pérez-Brocal; Miguel Pignatelli; Yvan Rahbé; John S Ramsey; Chelsea J. Spragg; Javier Tamames; Daniel Tamarit; Cecilia Tamborindeguy; Caroline Vincent-Monegat; Andreas Vilcinskas

BackgroundRecent genomic analyses of arthropod defense mechanisms suggest conservation of key elements underlying responses to pathogens, parasites and stresses. At the center of pathogen-induced immune responses are signaling pathways triggered by the recognition of fungal, bacterial and viral signatures. These pathways result in the production of response molecules, such as antimicrobial peptides and lysozymes, which degrade or destroy invaders. Using the recently sequenced genome of the pea aphid (Acyrthosiphon pisum), we conducted the first extensive annotation of the immune and stress gene repertoire of a hemipterous insect, which is phylogenetically distantly related to previously characterized insects models.ResultsStrikingly, pea aphids appear to be missing genes present in insect genomes characterized to date and thought critical for recognition, signaling and killing of microbes. In line with results of gene annotation, experimental analyses designed to characterize immune response through the isolation of RNA transcripts and proteins from immune-challenged pea aphids uncovered few immune-related products. Gene expression studies, however, indicated some expression of immune and stress-related genes.ConclusionsThe absence of genes suspected to be essential for the insect immune response suggests that the traditional view of insect immunity may not be as broadly applicable as once thought. The limitations of the aphid immune system may be representative of a broad range of insects, or may be aphid specific. We suggest that several aspects of the aphid life style, such as their association with microbial symbionts, could facilitate survival without strong immune protection.


Insect Molecular Biology | 2010

Comparative analysis of detoxification enzymes in Acyrthosiphon pisum and Myzus persicae

John S Ramsey; D. S. Rider; Tom Walsh; M. de Vos; Karl H.J. Gordon; L. Ponnala; Simone L. Macmil; Bruce A. Roe; Georg Jander

Herbivorous insects use detoxification enzymes, including cytochrome P450 monooxygenases, glutathione S‐transferases, and carboxy/cholinesterases, to metabolize otherwise deleterious plant secondary metabolites. Whereas Acyrthosiphon pisum (pea aphid) feeds almost exclusively from the Fabaceae, Myzus persicae (green peach aphid) feeds from hundreds of species in more than forty plant families. Therefore, M. persicae as a species would be exposed to a greater diversity of plant secondary metabolites than A. pisum, and has been predicted to require a larger complement of detoxification enzymes. A comparison of M. persicae cDNA and A. pisum genomic sequences is partially consistent with this hypothesis. There is evidence of at least 40% more cytochrome P450 genes in M. persicae than in A. pisum. In contrast, no major differences were found between the two species in the numbers of glutathione S‐transferases, and carboxy/cholinesterases. However, given the incomplete M. persicae cDNA data set, the number of identified detoxification genes in this species is likely to be an underestimate.


PLOS ONE | 2012

Insecticide Resistance Mechanisms in the Green Peach Aphid Myzus persicae (Hemiptera: Aphididae) I: A Transcriptomic Survey

Andrea X. Silva; Georg Jander; Horacio Samaniego; John S Ramsey; Christian C. Figueroa

Background Insecticide resistance is one of the best examples of rapid micro-evolution found in nature. Since the development of the first synthetic insecticide in 1939, humans have invested considerable effort to stay ahead of resistance phenotypes that repeatedly develop in insects. Aphids are a group of insects that have become global pests in agriculture and frequently exhibit insecticide resistance. The green peach aphid, Myzus persicae, has developed resistance to at least seventy different synthetic compounds, and different insecticide resistance mechanisms have been reported worldwide. Methodology/Principal Findings To further characterize this resistance, we analyzed genome-wide transcriptional responses in three genotypes of M. persicae, each exhibiting different resistance mechanisms, in response to an anti-cholinesterase insecticide. The sensitive genotype (exhibiting no resistance mechanism) responded to the insecticide by up-regulating 183 genes primarily ones related to energy metabolism, detoxifying enzymes, proteins of extracellular transport, peptidases and cuticular proteins. The second genotype (resistant through a kdr sodium channel mutation), up-regulated 17 genes coding for detoxifying enzymes, peptidase and cuticular proteins. Finally, a multiply resistant genotype (carrying kdr and a modified acetylcholinesterase), up-regulated only 7 genes, appears not to require induced insecticide detoxification, and instead down-regulated many genes. Conclusions/Significance This study suggests strongly that insecticide resistance in M. persicae is more complex that has been described, with the participation of a broad array of resistance mechanisms. The sensitive genotype exhibited the highest transcriptional plasticity, accounting for the wide range of potential adaptations to insecticides that this species can evolve. In contrast, the multiply resistant genotype exhibited a low transcriptional plasticity, even for the expression of genes encoding enzymes involved in insecticide detoxification. Our results emphasize the value of microarray studies to search for regulated genes in insects, but also highlights the many ways those different genotypes can assemble resistant phenotypes depending on the environmental pressure.


Insect Molecular Biology | 2010

Genomic evidence for complementary purine metabolism in the pea aphid, Acyrthosiphon pisum, and its symbiotic bacterium Buchnera aphidicola

John S Ramsey; Sandy J. MacDonald; Georg Jander; Atsushi Nakabachi; Gavin H. Thomas; Angela E. Douglas

The purine salvage pathway recycles purines to nucleotides, promoting efficient utilization of purine nucleotides. Exceptionally among animals with completely sequenced genomes, the pea aphid lacks key purine recycling genes that code for purine nucleoside phosphorylase and adenosine deaminase, indicating that the aphid can neither metabolize nucleosides to the corresponding purines, nor adenosine to inosine. Purine metabolism genes in the symbiotic bacterium Buchnera complement aphid genes, and Buchnera can meet its nucleotide requirement from aphid‐derived guanosine. Buchnera demand for nucleosides may have relaxed the selection for purine recycling in the aphid, leading to the loss of key aphid purine salvage genes. Further, the coupled purine metabolism of aphid and Buchnera could contribute to the dependence of the pea aphid on this symbiosis.


Journal of Visualized Experiments | 2008

Testing nicotine tolerance in aphids using an artificial diet experiment.

John S Ramsey; Georg Jander

Plants may upregulate the production of many different seconday metabolites in response to insect feeding. One of these metabolites, nicotine, is well know to have insecticidal properties. One response of tobacco plants to herbivory, or being gnawed upon by insects, is to increase the production of this neurotoxic alkaloid. Here, we will demonstrate how to set up an experiment to address this question of whether a tobacco-adapted strain of the green peach aphid, Myzus persicae, can tolerate higher levels of nicotine than the a strain of this insect that does not infest tobacco in the field.


Journal of Chemical Ecology | 2014

Adaptation to Nicotine Feeding in Myzus persicae

John S Ramsey; Dezi A. Elzinga; Pooja Sarkar; Yi-Ran Xin; Murad Ghanim; Georg Jander


8th International symposium on Aphids | 2009

Uncovering the limitation of the aphid immune response

Nicole M. Gerardo; Boran Altincicek; Caroline Anselme; Hagop S. Atamian; Seth M. Barribeau; Martin de Vos; Jay D. Evans; Toni Gabaldón; Murad Ghanim; Abdelaziz Heddi; Isgouhi Kaloshian; Amparo Latorre; C. Monégat; Andrés Moya; Atsushi Nakabachi; Benjamin J. Parker; Vincente Pérez-Brocal; Miguel Pignatelli; Yvan Rahbé; John S Ramsey; Chelsea J. Spragg; Javier Tamames; Daniel Tamarit; Cecilia Tamborindeguy; Andreas Vilcinskas


5th Meeting of the International Aphid Genomics Consortium "Pea Aphid Genome Annotation Workshop 2", Barcelona, Espagne, Juin 2009 | 2009

The power of combining genome annotation and systems level modeling.

S.J. Macdonald; John S Ramsey; Georg Jander; Atsushi Nakabachi; G.H. Thomas; Alex C. C. Wilson; P.D. Ashton; Federica Calevro; Hubert Charles; Stefano Colella; Gérard Febvay; Angela E. Douglas

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Georg Jander

Boyce Thompson Institute for Plant Research

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Atsushi Nakabachi

Toyohashi University of Technology

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Cecilia Tamborindeguy

Agricultural Research Service

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Jay D. Evans

Agricultural Research Service

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Martin de Vos

Boyce Thompson Institute for Plant Research

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