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Dive into the research topics where Jonathan H. Chung is active.

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Featured researches published by Jonathan H. Chung.


Chest | 2015

CT Scan Findings of Probable Usual Interstitial Pneumonitis Have a High Predictive Value for Histologic Usual Interstitial Pneumonitis

Jonathan H. Chung; Ashish Chawla; Anna L. Peljto; Carlyne D. Cool; Steve D. Groshong; Janet Talbert; David F. McKean; Kevin K. Brown; Tasha E. Fingerlin; Marvin I. Schwarz; David A. Schwartz; David A. Lynch

BACKGROUND The current usual interstitial pneumonitis (UIP)/idiopathic pulmonary fibrosis CT scan classification system excludes probable UIP as a diagnostic category. We sought to determine the predictive effect of probable UIP on CT scan on histology and the effect of the promoter polymorphism in MUC5B (rs35705950) on histologic and CT scan UIP diagnosis. METHODS The cohort included 201 subjects with pulmonary fibrosis who had lung tissue samples obtained within 1 year of chest CT scan. UIP diagnosis on CT scan was categorized as inconsistent with, indeterminate, probable, or definite UIP by two to three pulmonary radiologists. Tissue slides were scored by two expert pulmonary pathologists. All subjects with available DNA (N = 200) were genotyped for rs35705950. RESULTS The proportion of CT scan diagnoses were as follows: inconsistent with (69 of 201, 34.3%), indeterminate (72 of 201, 35.8%), probable (34 of 201, 16.9%), and definite (26 of 201, 12.9%) UIP. Subjects with probable UIP on CT scan were more likely to have histologic probable/definite UIP than subjects with indeterminate UIP on CT scan (82.4% [28 of 34] vs 54.2% [39 of 72]; P = .01). CT scan and microscopic honeycombing were not associated with each other (P = .76). The minor (T) allele of the MUC5B polymorphism was associated with concordant CT scan and histologic UIP diagnosis (P = .03). CONCLUSIONS Probable UIP on CT scan is associated with a higher rate of histologic UIP than indeterminate UIP on CT scan suggesting that they are distinct groups and should not be combined into a single CT scan category as currently recommended by guidelines. CT scan and microscopic honeycombing may be dissimilar entities. The T allele at rs35705950 predicts a UIP diagnosis by both chest CT scan and histology.


European Respiratory Journal | 2016

Characterisation of patients with interstitial pneumonia with autoimmune features.

Justin M. Oldham; Ayodeji Adegunsoye; Eleanor Valenzi; Cathryn Lee; Leah J. Witt; Lena W. Chen; Aliya N. Husain; Steven M. Montner; Jonathan H. Chung; Cottin; Aryeh Fischer; Imre Noth; Rekha Vij; Mary E. Strek

Patients with interstitial lung disease (ILD) may have features of connective tissue disease (CTD), but lack findings diagnostic of a specific CTD. A recent European Respiratory Society/American Thoracic Society research statement proposed criteria for patients with interstitial pneumonia with autoimmune features (IPAF). We applied IPAF criteria to patients with idiopathic interstitial pneumonia and undifferentiated CTD-ILD (UCTD). We then characterised the clinical, serological and morphological features of the IPAF cohort, compared outcomes to other ILD cohorts and validated individual IPAF domains using survival as an endpoint. Of 422 patients, 144 met IPAF criteria. Mean age was 63.2 years with a slight female predominance. IPAF cohort survival was marginally better than patients with idiopathic pulmonary fibrosis, but worse than CTD-ILD. A non-usual interstitial pneumonia pattern was associated with improved survival, as was presence of the clinical domain. A modified IPAF cohort of those meeting the clinical domain and a radiographic or histological feature within the morphological domain displayed survival similar to those with CTD-ILD. IPAF is common among patients with idiopathic interstitial pneumonia and UCTD. Specific IPAF features can identify subgroups with differential survival. Further research is needed to replicate these findings and determine whether patients meeting IPAF criteria benefit from immunosuppressive therapy. IPAF is common among patients with IIP and has distinct subgroups that demonstrate differential survival http://ow.ly/Z0ShD


European Respiratory Journal | 2016

Predictors of mortality in rheumatoid arthritis-associated interstitial lung disease

Joshua J. Solomon; Jonathan H. Chung; Cosgrove Gp; Demoruelle Mk; Evans R. Fernandez-Perez; Aryeh Fischer; Frankel Sk; Stephen B. Hobbs; Tristan J. Huie; Ketzer J; Amar Mannina; Russell G; Tsuchiya Y; Zulma X. Yunt; Zelarney Pt; Kevin K. Brown; Jeffrey J. Swigris

Interstitial lung disease (ILD) is a common pulmonary manifestation of rheumatoid arthritis. There is lack of clarity around predictors of mortality and disease behaviour over time in these patients. We identified rheumatoid arthritis-related interstitial lung disease (RA-ILD) patients evaluated at National Jewish Health (Denver, CO, USA) from 1995 to 2013 whose baseline high-resolution computed tomography (HRCT) scans showed either a nonspecific interstitial pneumonia (NSIP) or a “definite” or “possible” usual interstitial pneumonia (UIP) pattern. We used univariate, multivariate and longitudinal analytical methods to identify clinical predictors of mortality and to model disease behaviour over time. The cohort included 137 subjects; 108 had UIP on HRCT (RA-UIP) and 29 had NSIP on HRCT (RA-NSIP). Those with RA-UIP had a shorter survival time than those with RA-NSIP (log rank p=0.02). In a model controlling for age, sex, smoking and HRCT pattern, a lower baseline % predicted forced vital capacity (FVC % pred) (HR 1.46; p<0.0001) and a 10% decline in FVC % pred from baseline to any time during follow up (HR 2.57; p<0.0001) were independently associated with an increased risk of death. Data from this study suggest that in RA-ILD, disease progression and survival differ between subgroups defined by HRCT pattern; however, when controlling for potentially influential variables, pulmonary physiology, but not HRCT pattern, independently predicts mortality. In rheumatoid-arthritis associated interstitial lung disease, physiology, and not HRCT pattern, predicts mortality http://ow.ly/Uf1IF


Human Mutation | 2011

Genotype and cardiovascular phenotype correlations with TBX1 in 1,022 velo-cardio-facial/DiGeorge/22q11.2 deletion syndrome patients.

Tingwei Guo; Donna M. McDonald-McGinn; Anna Blonska; Alan Shanske; Anne S. Bassett; Eva W.C. Chow; Mark Bowser; Molly B. Sheridan; Frits A. Beemer; Koen Devriendt; Ann Swillen; Jeroen Breckpot; Maria Cristina Digilio; Bruno Marino; Bruno Dallapiccola; Courtney Carpenter; Xin Zheng; Jacob Johnson; Jonathan H. Chung; Anne Marie Higgins; Nicole Philip; Tony J. Simon; Karlene Coleman; Damian Heine-Suner; Jordi Rosell; Wendy R. Kates; Marcella Devoto; Elizabeth Goldmuntz; Elaine H. Zackai; Tao Wang

Haploinsufficiency of TBX1, encoding a T‐box transcription factor, is largely responsible for the physical malformations in velo‐cardio‐facial /DiGeorge/22q11.2 deletion syndrome (22q11DS) patients. Cardiovascular malformations in these patients are highly variable, raising the question as to whether DNA variations in the TBX1 locus on the remaining allele of 22q11.2 could be responsible. To test this, a large sample size is needed. The TBX1 gene was sequenced in 360 consecutive 22q11DS patients. Rare and common variations were identified. We did not detect enrichment in rare SNP (single nucleotide polymorphism) number in those with or without a congenital heart defect. One exception was that there was increased number of very rare SNPs between those with normal heart anatomy compared to those with right‐sided aortic arch or persistent truncus arteriosus, suggesting potentially protective roles in the SNPs for these phenotype‐enrichment groups. Nine common SNPs (minor allele frequency, MAF > 0.05) were chosen and used to genotype the entire cohort of 1,022 22q11DS subjects. We did not find a correlation between common SNPs or haplotypes and cardiovascular phenotype. This work demonstrates that common DNA variations in TBX1 do not explain variable cardiovascular expression in 22q11DS patients, implicating existence of modifiers in other genes on 22q11.2 or elsewhere in the genome. Hum Mutat 32:1278–1289, 2011. ©2011 Wiley Periodicals, Inc.


Radiographics | 2012

Common and Uncommon Manifestations of Wegener Granulomatosis at Chest CT: Radiologic-Pathologic Correlation

Felipe Martinez; Jonathan H. Chung; Subba R. Digumarthy; Jeffrey P. Kanne; Gerald F. Abbott; Jo-Anne O. Shepard; Eugene J. Mark; Amita Sharma

Wegener granulomatosis is an uncommon necrotizing vasculitis that classically manifests as a clinical triad consisting of upper and lower airway involvement and glomerulonephritis. Other less frequently involved organ systems include the central and peripheral nervous system and large joints. The diagnosis is based on a combination of clinical and laboratory findings. Because thoracic involvement often predominates, chest radiographic findings are often the first to suggest the diagnosis. However, chest computed tomography (CT) has superior sensitivity and specificity for evaluation of the airways, lung parenchyma, and mediastinum, particularly with the use of multiplanar reformatted and three-dimensional images. Common pulmonary radiologic findings include waxing and waning nodules, masses, ground-glass opacities, and consolidation. Airway involvement is usually characterized by circumferential tracheobronchial thickening, which can be smooth or nodular. Pleural effusions are the most common manifestation of pleural disease and can result from primary involvement or be secondary to renal failure. Mediastinal lymphadenopathy is a nonspecific finding and is usually reactive. Uncommon thoracic radiologic manifestations include involvement of the heart and great vessels. CT is the imaging modality of choice for diagnosis, surveillance, and follow-up in patients with Wegener granulomatosis.


Chest | 2015

The Clinical Course of Diffuse Idiopathic Pulmonary Neuroendocrine Cell Hyperplasia

Laurie L. Carr; Jonathan H. Chung; Rosane Duarte Achcar; Zoran Lesic; Ji Y. Rho; Kunihiro Yagihashi; Robert M. Tate; Jeffrey J. Swigris; Jeffrey A. Kern

BACKGROUND Current understanding of the clinical course of diffuse idiopathic pulmonary neuroendocrine cell hyperplasia (DIPNECH) is poor and based predominantly on small case series. In our clinical experience, we have found that the diagnosis of DIPNECH is frequently delayed because respiratory symptoms are ascribed to other lung conditions. The objectives of this study were to collect and analyze longitudinal clinical data on pulmonary physiology, chest high-resolution CT (HRCT) imaging, and therapies to better delineate the course of disease. METHODS We established a cohort of patients (N = 30) with DIPNECH seen at our institution. We used descriptive statistics to summarize cohort characteristics and longitudinal analytic techniques to model FEV1 % predicted (FEV1%) over time. RESULTS All subjects were women who presented with long-standing cough and dyspnea. The majority had an FEV1% < 50% at the time of diagnosis. Forty percent were given a diagnosis of asthma as the cause for physiologic obstruction. The mean FEV1% for the entire cohort showed no statistically significant decline over time, but 26% of the subjects experienced a 10% decline in FEV1 within 2 years. Among the pathology samples available for review, 28% (five of 18) had typical carcinoids and 44% had associated constrictive bronchiolitis. We propose clinical diagnostic criteria for DIPNECH that incorporate demographic, pulmonary physiology, HRCT imaging, and transbronchial and surgical lung biopsy data. CONCLUSIONS DIPNECH is a female-predominant lung disease manifested by dyspnea and cough, physiologic obstruction, and nodules on HRCT imaging. Additional research is needed to understand the natural history of this disease and validate the proposed diagnostic criteria.


Radiology | 2010

Case 160: Pulmonary mucormycosis.

Jonathan H. Chung; J. David Godwin; Jason W. Chien; Sudhakar J. Pipavath

The radiologist can be instrumental in alerting the clinician to mucormycosis when the reversed halo sign is present.


Aging Cell | 2016

Genomewide meta-analysis identifies loci associated with IGF-I and IGFBP-3 levels with impact on age-related traits

Alexander Teumer; Qibin Qi; Maria Nethander; Hugues Aschard; Stefania Bandinelli; Marian Beekman; Sonja I. Berndt; Martin Bidlingmaier; Linda Broer; Anne R. Cappola; Gian Paolo Ceda; Stephen J. Chanock; Ming-Huei Chen; Tai C. Chen; Yii-Der Ida Chen; Jonathan H. Chung; Fabiola Del Greco Miglianico; Joel Eriksson; Luigi Ferrucci; Nele Friedrich; Carsten Gnewuch; Mark O. Goodarzi; Niels Grarup; Tingwei Guo; Elke Hammer; Richard B. Hayes; Andrew A. Hicks; Albert Hofman; Jeanine J. Houwing-Duistermaat; Frank B. Hu

The growth hormone/insulin‐like growth factor (IGF) axis can be manipulated in animal models to promote longevity, and IGF‐related proteins including IGF‐I and IGF‐binding protein‐3 (IGFBP‐3) have also been implicated in risk of human diseases including cardiovascular diseases, diabetes, and cancer. Through genomewide association study of up to 30 884 adults of European ancestry from 21 studies, we confirmed and extended the list of previously identified loci associated with circulating IGF‐I and IGFBP‐3 concentrations (IGF1, IGFBP3, GCKR, TNS3, GHSR, FOXO3, ASXL2, NUBP2/IGFALS, SORCS2, and CELSR2). Significant sex interactions, which were characterized by different genotype–phenotype associations between men and women, were found only for associations of IGFBP‐3 concentrations with SNPs at the loci IGFBP3 and SORCS2. Analyses of SNPs, gene expression, and protein levels suggested that interplay between IGFBP3 and genes within the NUBP2 locus (IGFALS and HAGH) may affect circulating IGF‐I and IGFBP‐3 concentrations. The IGF‐I‐decreasing allele of SNP rs934073, which is an eQTL of ASXL2, was associated with lower adiposity and higher likelihood of survival beyond 90 years. The known longevity‐associated variant rs2153960 (FOXO3) was observed to be a genomewide significant SNP for IGF‐I concentrations. Bioinformatics analysis suggested enrichment of putative regulatory elements among these IGF‐I‐ and IGFBP‐3‐associated loci, particularly of rs646776 at CELSR2. In conclusion, this study identified several loci associated with circulating IGF‐I and IGFBP‐3 concentrations and provides clues to the potential role of the IGF axis in mediating effects of known (FOXO3) and novel (ASXL2) longevity‐associated loci.


Journal of The American College of Radiology | 2014

ACR Appropriateness Criteria Blunt Chest Trauma

Jonathan H. Chung; Christian W. Cox; Tan Lucien H Mohammed; Jacobo Kirsch; Kathleen Brown; Debra Sue Dyer; Mark E. Ginsburg; Darel E. Heitkamp; Jeffrey P. Kanne; Ella A. Kazerooni; Loren Ketai; James G. Ravenel; Anthony Saleh; Rakesh Shah; Robert M. Steiner; Robert D. Suh

Imaging is paramount in the setting of blunt trauma and is now the standard of care at any trauma center. Although anteroposterior radiography has inherent limitations, the ability to acquire a radiograph in the trauma bay with little interruption in clinical survey, monitoring, and treatment, as well as radiographys accepted role in screening for traumatic aortic injury, supports the routine use of chest radiography. Chest CT or CT angiography is the gold-standard routine imaging modality for detecting thoracic injuries caused by blunt trauma. There is disagreement on whether routine chest CT is necessary in all patients with histories of blunt trauma. Ultimately, the frequency and timing of CT chest imaging should be site specific and should depend on the local resources of the trauma center as well as patient status. Ultrasound may be beneficial in the detection of pneumothorax, hemothorax, and pericardial hemorrhage; transesophageal echocardiography is a first-line imaging tool in the setting of suspected cardiac injury. In the blunt trauma setting, MRI and nuclear medicine likely play no role in the acute setting, although these modalities may be helpful as problem-solving tools after initial assessment. The ACR Appropriateness Criteria are evidence-based guidelines for specific clinical conditions that are reviewed every 2 years by a multidisciplinary expert panel. The guideline development and review include an extensive analysis of current medical literature from peer-reviewed journals and the application of a well-established consensus methodology (modified Delphi) to rate the appropriateness of imaging and treatment procedures by the panel. In those instances in which evidence is lacking or not definitive, expert opinion may be used to recommend imaging or treatment.


American Journal of Roentgenology | 2011

CT of Diffuse Tracheal Diseases

Jonathan H. Chung; Jeffrey P. Kanne; Matthew D. Gilman

AJR:196, March 2011 both relapsing polychondritis and tracheobronchopathia osteochondroplastica. However, the presence of focal coarse calcification and ossification is highly suggestive of tracheobronchopathia osteochondroplastica rather than relapsing polychondritis. 7. Nodular calcification of the trachea is common in tracheobronchopathia osteochondroplastica and amyloidosis. However, amyloidosis tends to involve the airway concentrically, as opposed to tracheobronchopathia osteochondroplastica which spares the posterior wall. 8. Wegener granulomatosis most often affects the subglottic trachea but can be diffuse or multifocal. 9. Mounier-Kuhn syndrome is unique among the diffuse tracheal diseases in that it results in diffuse airway dilatation. Diverticula project between the cartilaginous rings giving the trachea and proximal bronchi a corrugated appearance.

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David A. Lynch

University of California

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Christopher M. Walker

University of Missouri–Kansas City

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Rekha Vij

University of Chicago

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Imre Noth

University of Virginia

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Jeffrey P. Kanne

University of Wisconsin-Madison

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