Jonathan R. Lloyd

The removal of colour from textile wastewater using whole bacterial cells: a review

Abstract The delivery of colour in the form of dyes onto textile fibres is not an efficient process. The degree of efficiency varies, depending on the method of delivery. As a result, most of the wastewater produced by the textile industry is coloured. It is likely that coloured wastewater was a feature of the first practices of textile dyeing. However, treatment to remove this colour was not considered until the early natural dyestuffs were replaced by synthetic dyes, and the persistence of such synthetic dyes in the environment was recognised (Willmott NJ. The use of bacteria–polymer composites for the removal of colour from reactive dye effluents. PhD thesis, UK: University of Leeds; 1997.). Colour pollution in aquatic environments is an escalating problem, despite the fact that there has been substantial research into the modification of the dyeing process to improve the level of affinity/fixation of the dyestuffs onto the substrate. The recalcitrant nature of modern synthetic dyes has led to the imposition of strict environmental regulations. The need for a cost-effective process to remove the colour from wastewater produced by the textile industry has been recognised (Willmott NJ, Guthrie JT, Nelson G. The biotechnology approach to colour removal from textile effluent. JSDC 1998;114(February):38–41.). Several strategies have been investigated. However, the review presented here concerns the use of whole bacterial cells for the reduction of water-soluble dyes present in textile dyeing wastewater.

Role of metal-reducing bacteria in arsenic release from Bengal delta sediments

The contamination of ground waters, abstracted for drinking and irrigation, by sediment-derived arsenic threatens the health of tens of millions of people worldwide, most notably in Bangladesh and West Bengal. Despite the calamitous effects on human health arising from the extensive use of arsenic-enriched ground waters in these regions, the mechanisms of arsenic release from sediments remain poorly characterized and are topics of intense international debate. We use a microscosm-based approach to investigate these mechanisms: techniques of microbiology and molecular ecology are used in combination with aqueous and solid phase speciation analysis of arsenic. Here we show that anaerobic metal-reducing bacteria can play a key role in the mobilization of arsenic in sediments collected from a contaminated aquifer in West Bengal. We also show that, for the sediments in this study, arsenic release took place after Fe(iii) reduction, rather than occurring simultaneously. Identification of the critical factors controlling the biogeochemical cycling of arsenic is one important contribution to fully informing the development of effective strategies to manage these and other similar arsenic-rich ground waters worldwide.

Secretion of Flavins by Shewanella Species and Their Role in Extracellular Electron Transfer

ABSTRACT Fe(III)-respiring bacteria such as Shewanella species play an important role in the global cycle of iron, manganese, and trace metals and are useful for many biotechnological applications, including microbial fuel cells and the bioremediation of waters and sediments contaminated with organics, metals, and radionuclides. Several alternative electron transfer pathways have been postulated for the reduction of insoluble extracellular subsurface minerals, such as Fe(III) oxides, by Shewanella species. One such potential mechanism involves the secretion of an electron shuttle. Here we identify for the first time flavin mononucleotide (FMN) and riboflavin as the extracellular electron shuttles produced by a range of Shewanella species. FMN secretion was strongly correlated with growth and exceeded riboflavin secretion, which was not exclusively growth associated but was maximal in the stationary phase of batch cultures. Flavin adenine dinucleotide was the predominant intracellular flavin but was not released by live cells. The flavin yields were similar under both aerobic and anaerobic conditions, with total flavin concentrations of 2.9 and 2.1 μmol per gram of cellular protein, respectively, after 24 h and were similar under dissimilatory Fe(III)-reducing conditions and when fumarate was supplied as the sole electron acceptor. The flavins were shown to act as electron shuttles and to promote anoxic growth coupled to the accelerated reduction of poorly crystalline Fe(III) oxides. The implications of flavin secretion by Shewanella cells living at redox boundaries, where these mineral phases can be significant electron acceptors for growth, are discussed.

Microbial reduction of metals and radionuclides

The microbial reduction of metals has attracted recent interest as these transformations can play crucial roles in the cycling of both inorganic and organic species in a range of environments and, if harnessed, may offer the basis for a wide range of innovative biotechnological processes. Under certain conditions, however, microbial metal reduction can also mobilise toxic metals with potentially calamitous effects on human health. This review focuses on recent research on the reduction of a wide range of metals including Fe(III), Mn(IV) and other more toxic metals such as Cr(VI), Hg(II), Co(III), Pd(II), Au(III), Ag(I), Mo(VI) and V(V). The reduction of metalloids including As(V) and Se(VI) and radionuclides including U(VI), Np(V) and Tc(VII) is also reviewed. Rapid advances over the last decade have resulted in a detailed understanding of some of these transformations at a molecular level. Where known, the mechanisms of metal reduction are discussed, alongside the environmental impact of such transformations and possible biotechnological applications that could utilise these activities.

Microbial detoxification of metals and radionuclides

Microorganisms have important roles in the biogeochemical cycling of toxic metals and radionuclides. Recent advances have been made in understanding metal-microbe interactions and new applications of these processes to the detoxification of metal and radionuclide contamination have been developed.

Direct and Fe(II)-Mediated Reduction of Technetium by Fe(III)-Reducing Bacteria

ABSTRACT The dissimilatory Fe(III)-reducing bacterium Geobacter sulfurreducens reduced and precipitated Tc(VII) by two mechanisms. Washed cell suspensions coupled the oxidation of hydrogen to enzymatic reduction of Tc(VII) to Tc(IV), leading to the precipitation of TcO2 at the periphery of the cell. An indirect, Fe(II)-mediated mechanism was also identified. Acetate, although not utilized efficiently as an electron donor for direct cell-mediated reduction of technetium, supported the reduction of Fe(III), and the Fe(II) formed was able to transfer electrons abiotically to Tc(VII). Tc(VII) reduction was comparatively inefficient via this indirect mechanism when soluble Fe(III) citrate was supplied to the cultures but was enhanced in the presence of solid Fe(III) oxide. The rate of Tc(VII) reduction was optimal, however, when Fe(III) oxide reduction was stimulated by the addition of the humic analog and electron shuttle anthaquinone-2,6-disulfonate, leading to the rapid formation of the Fe(II)-bearing mineral magnetite. Under these conditions, Tc(VII) was reduced and precipitated abiotically on the nanocrystals of biogenic magnetite as TcO2 and was removed from solution to concentrations below the limit of detection by scintillation counting. Cultures of Fe(III)-reducing bacteria enriched from radionuclide-contaminated sediment using Fe(III) oxide as an electron acceptor in the presence of 25 μM Tc(VII) contained a singleGeobacter sp. detected by 16S ribosomal DNA analysis and were also able to reduce and precipitate the radionuclide via biogenic magnetite. Fe(III) reduction was stimulated in aquifer material, resulting in the formation of Fe(II)-containing minerals that were able to reduce and precipitate Tc(VII). These results suggest that Fe(III)-reducing bacteria may play an important role in immobilizing technetium in sediments via direct and indirect mechanisms.

Whole cell- and protein-based biosensors for the detection of bioavailable heavy metals in environmental samples:

The principal goal of this work was to establish the feasibility of two biosensor technologies with enhanced specificity and selectivity for the detection of several bioavailable heavy metals in environmental samples. Two parallel strategies have been followed. The first approach was to construct whole cell bacterial biosensors that emit a bioluminescent or fluorescent signal in the presence of a biologically available heavy metal. The molecular basis of σ-54 promoters as sensing elements of environmental pollutants has been determined and a number of metal-induced promoter regions have been identified, sequenced and cloned as promoter cassettes. The specificity of the promoter cassettes has been determined using luxCDABE reporter systems. Whole cell-biosensors containing metal-induced lux reporter systems have been incorporated into different matrices for their later immobilisation on optic fibres and characterised in terms of their sensitivity and storage capacity. The second type of sensors was based on the direct interaction between metal-binding proteins and heavy metal ions. In this case, the capacitance changes of the proteins, such as synechoccocal metallothionein (as a GST-SmtA fusion protein) and the mercury regulatory protein, MerR, were detected in the presence of femtomolar to millimolar metal ion concentrations.

Molecular Analysis of Arsenate-Reducing Bacteria within Cambodian Sediments following Amendment with Acetate

ABSTRACT The health of millions is threatened by the use of groundwater contaminated with sediment-derived arsenic for drinking water and irrigation purposes in Southeast Asia. The microbial reduction of sorbed As(V) to the potentially more mobile As(III) has been implicated in release of arsenic into groundwater, but to date there have been few studies of the microorganisms that can mediate this transformation in aquifers. With the use of stable isotope probing of nucleic acids, we present evidence that the introduction of a proxy for organic matter (13C-labeled acetate) stimulated As(V) reduction in sediments collected from a Cambodian aquifer that hosts arsenic-rich groundwater. This was accompanied by an increase in the proportion of prokaryotes closely related to the dissimilatory As(V)-reducing bacteria Sulfurospirillum strain NP-4 and Desulfotomaculum auripigmentum. As(V) respiratory reductase genes (arrA) closely associated with those found in Sulfurospirillum barnesii and Geobacter uraniumreducens were also detected in active bacterial communities utilizing 13C-labeled acetate in microcosms. This study suggests a direct link between inputs of organic matter and the increased prevalence and activity of organisms which transform As(V) to the potentially more mobile and thus hazardous As(III) via dissimilatory As(V) reduction.

Interactions between the Fe(III)-Reducing Bacterium Geobacter sulfurreducens and Arsenate, and Capture of the Metalloid by Biogenic Fe(II)

ABSTRACT Previous work has shown that microbial communities in As-mobilizing sediments from West Bengal were dominated by Geobacter species. Thus, the potential of Geobacter sulfurreducens to mobilize arsenic via direct enzymatic reduction and indirect mechanisms linked to Fe(III) reduction was analyzed. G. sulfurreducens was unable to conserve energy for growth via the dissimilatory reduction of As(V), although it was able to grow in medium containing fumarate as the terminal electron acceptor in the presence of 500 μM As(V). There was also no evidence of As(III) in culture supernatants, suggesting that resistance to 500 μM As(V) was not mediated by a classical arsenic resistance operon, which would rely on the intracellular reduction of As(V) and the efflux of As(III). When the cells were grown using soluble Fe(III) as an electron acceptor in the presence of As(V), the Fe(II)-bearing mineral vivianite was formed. This was accompanied by the removal of As, predominantly as As(V), from solution. Biogenic siderite (ferrous carbonate) was also able to remove As from solution. When the organism was grown using insoluble ferrihydrite as an electron acceptor, Fe(III) reduction resulted in the formation of magnetite, again accompanied by the nearly quantitative sorption of As(V). These results demonstrate that G. sulfurreducens, a model Fe(III)-reducing bacterium, did not reduce As(V) enzymatically, despite the apparent genetic potential to mediate this transformation. However, the reduction of Fe(III) led to the formation of Fe(II)-bearing phases that are able to capture arsenic species and could act as sinks for arsenic in sediments.

Reduction of Actinides and Fission Products by Fe(III)-Reducing Bacteria

Microbial metabolism plays a pivotal role in controlling the solubility and mobility of radionuclides in waters contaminated by nuclear waste. The distribution and activity of dissimilatory Fe(III)-reducing bacteria are of particular importance because they can alter the solubility of radionuclides via direct enzymatic reduction or by indirect mechanisms catalyzed via a range of electron shuttling compounds. Using a combination of the techniques of microbiology, biochemistry, and molecular biology, we have characterized the mechanisms of electron transfer to key radionuclides by Fe(III)-reducing bacteria. The mechanisms of enzyme-mediated reduction of problematic actinides, principally U(VI) but including Pu(IV) and Np(V), are described in this review. In addition, the mechanisms by which the fission product Tc(VII) is reduced are also discussed. Direct enzymatic reductions of Tc(VII), catalyzed by microbial hydrogenases, are described along with indirect mechanisms catalyzed by microbially produced Fe(II). Finally, we describe new results that demonstrate the transfer of electrons from biogenic U(IV) to Tc(VII), leading to coprecipitation of Tc(IV) and U(IV), and opening the way for treatment of liquid wastes cocontaminated with both uranium and technetium in one step.