Network


Latest external collaboration on country level. Dive into details by clicking on the dots.

Hotspot


Dive into the research topics where Jonathan T. C. Liu is active.

Publication


Featured researches published by Jonathan T. C. Liu.


Applied Optics | 2005

Near-infrared diode laser absorption diagnostic for temperature and water vapor in a scramjet combustor

Jonathan T. C. Liu; Gregory B. Rieker; Jay B. Jeffries; Mark R. Gruber; Campbell D. Carter; Tarun Mathur; Ronald K. Hanson

Tunable diode laser absorption measurements of gas temperature and water concentration were made at the exit of a model scramjet combustor fueled on JP-7. Multiplexed, fiber-coupled, near-infrared distributed feedback lasers were used to probe three water vapor absorption features in the 1.34-1.47 microm spectral region (2v1 and vl + v3 overtone bands). Ratio thermometry was performed using direct-absorption wavelength scans of isolated features at a 4-kHz repetition rate, as well as 2f wavelength modulation scans at a 2-kHz scan rate. Large signal-to-noise ratios demonstrate the ability of the optimally engineered optical hardware to reject beam steering and vibration noise. Successful measurements were made at full combustion conditions for a variety of fuel/air equivalence ratios and at eight vertical positions in the duct to investigate spatial uniformity. The use of three water vapor absorption features allowed for preliminary estimates of temperature distributions along the line of sight. The improved signal quality afforded by 2f measurements, in the case of weak absorption, demonstrates the utility of a scanned wavelength modulation strategy in such situations.


Optics Letters | 2007

Miniature near-infrared dual-axes confocal microscope utilizing a two-dimensional microelectromechanical systems scanner

Jonathan T. C. Liu; Michael J. Mandella; Hyejun Ra; Larry K. Wong; Olav Solgaard; Gordon S. Kino; Wibool Piyawattanametha; Christopher H. Contag; Thomas D. Wang

The first, to our knowledge, miniature dual-axes confocal microscope has been developed, with an outer diameter of 10 mm, for subsurface imaging of biological tissues with 5-7 microm resolution. Depth-resolved en face images are obtained at 30 frames per second, with a field of view of 800 x 100 microm, by employing a two-dimensional scanning microelectromechanical systems mirror. Reflectance and fluorescence images are obtained with a laser source at 785 nm, demonstrating the ability to perform real-time optical biopsy.


Journal of Biomedical Optics | 2012

In vivo near-infrared dual-axis confocal microendoscopy in the human lower gastrointestinal tract

Wibool Piyawattanametha; Hyejun Ra; Zhen Qiu; Shai Friedland; Jonathan T. C. Liu; Kevin E. Loewke; Gordon S. Kino; Olav Solgaard; Thomas D. Wang; Michael J. Mandella; Christopher H. Contag

Near-infrared confocal microendoscopy is a promising technique for deep in vivo imaging of tissues and can generate high-resolution cross-sectional images at the micron-scale. We demonstrate the use of a dual-axis confocal (DAC) near-infrared fluorescence microendoscope with a 5.5-mm outer diameter for obtaining clinical images of human colorectal mucosa. High-speed two-dimensional en face scanning was achieved through a microelectromechanical systems (MEMS) scanner while a micromotor was used for adjusting the axial focus. In vivo images of human patients are collected at 5 frames/sec with a field of view of 362×212 μm(2) and a maximum imaging depth of 140 μm. During routine endoscopy, indocyanine green (ICG) was topically applied a nonspecific optical contrasting agent to regions of the human colon. The DAC microendoscope was then used to obtain microanatomic images of the mucosa by detecting near-infrared fluorescence from ICG. These results suggest that DAC microendoscopy may have utility for visualizing the anatomical and, perhaps, functional changes associated with colorectal pathology for the early detection of colorectal cancer.


Applied Optics | 2004

Large-modulation-depth 2f spectroscopy with diode lasers for rapid temperature and species measurements in gases with blended and broadened spectra

Jonathan T. C. Liu; Jay B. Jeffries; Ronald K. Hanson

A method that uses tunable diode lasers is developed for rapid temperature and concentration measurements of gases with highly broadened and congested spectra. Wavelength modulation absorption spectroscopy with 2f detection is utilized, because this derivative method offers benefits in dealing with blended spectral features. The 2f signal depends critically on the modulation depth of the laser alpha, which is increased to values above those typically achieved when wavelength modulation spectroscopy with diode lasers is performed. The 2f method with large modulation depths is validated by using near-IR diode lasers to probe pressure-broadened water-vapor features in the 1.4-microm region over a range of temperatures from 296 to 800 K and at pressures as high as 20 atm. Modulation depths as high as alpha = 0.8 cm(-1) are attained at modulation frequencies of 50 kHz and measurement bandwidths of 15 kHz. Comparisons of experimental results with 2f simulations, based on the HITRAN spectral database, provide confirmation of the capability of this method for rapid measurements of gas temperature and species concentration.


Biophysical Journal | 2009

Quantifying Cell-Surface Biomarker Expression in Thick Tissues with Ratiometric Three-Dimensional Microscopy

Jonathan T. C. Liu; Mike W. Helms; Michael J. Mandella; James M. Crawford; Gordon S. Kino; Christopher H. Contag

The burgeoning fields of in vivo three-dimensional (3D) microscopy and endomicroscopy, as well as ex vivo tissue cytometry have introduced new challenges for tissue preparation and staining with exogenous molecular contrast agents. These challenges include effective delivery of the agents, and once delivered, distinguishing between bound verses unbound molecular probes. If applied topically, there are additional issues with rinsing off unbound probe, which can be nonuniform and inefficient in thick tissues, thus leading to ambiguous contrast and a large nonspecific background that may obscure molecule-specific staining. Therefore, we have developed a ratiometric 3D microscopy scheme that not only reduces the effects of nonspecific sources of contrast, but also enables quantification of the relative binding affinity of imaging probes to their biomarker targets. Here we demonstrate this ratiometric approach by simultaneously imaging a HER2/neu (erbB2)-targeted monoclonal antibody labeled with one fluorophore and an isotype-matched negative control antibody labeled with another fluorophore. By taking a pixel-by-pixel calibrated ratio between the signals from each fluorescent image channel, accurate quantification of specific versus nonspecific binding affinity is achieved with cultured cells, yielding data that are in agreement with analyses via flow cytometry. We also demonstrate quantitative 3D microscopic imaging of biomarker expression in tissue models and in thick human biopsy samples of normal, HER2-negative, and HER2-positive breast tumors. This strategy enables rapid, quantitative, and unambiguous volumetric microscopy of biomarker expression in thick tissues, including whole biopsies, and will enable real-time optical assessment of disease markers in the living body.


Journal of Biomedical Optics | 2006

Dual-axes confocal reflectance microscope for distinguishing colonic neoplasia

Jonathan T. C. Liu; Michael J. Mandella; Shai Friedland; Roy Soetikno; James M. Crawford; Christopher H. Contag; Gordon S. Kino; Thomas D. Wang

A dual-axes confocal reflectance microscope has been developed that utilizes a narrowband laser at 1310 nm to achieve high axial resolution, image contrast, field of view, and tissue penetration for distinguishing among normal, hyperplastic, and dysplastic colonic mucosa ex vivo. Light is collected off-axis using a low numerical aperture objective to obtain vertical image sections, with 4- to 5-microm resolution, at tissue depths up to 610 microm. Post-objective scanning enables a large field of view (610 x 640 microm), and balanced-heterodyne detection provides sensitivity to collect vertical sections at one frame per second. System optics are optimized to effectively reject out-of-focus scattered light without use of a low-coherence gate. This design is scalable to millimeter dimensions, and the results demonstrate the potential for a miniature instrument to detect precancerous tissues, and hence to perform in vivo histopathology.


Journal of Biomedical Optics | 2010

Micromirror-scanned dual-axis confocal microscope utilizing a gradient-index relay lens for image guidance during brain surgery

Jonathan T. C. Liu; Michael J. Mandella; Nathan O. Loewke; Henry Haeberle; Hyejun Ra; Wibool Piyawattanametha; Olav Solgaard; Gordon S. Kino; Christopher H. Contag

A fluorescence confocal microscope incorporating a 1.8-mm-diam gradient-index relay lens is developed for in vivo histological guidance during resection of brain tumors. The microscope utilizes a dual-axis confocal architecture to efficiently reject out-of-focus light for high-contrast optical sectioning. A biaxial microelectromechanical system (MEMS) scanning mirror is actuated at resonance along each axis to achieve a large field of view with low-voltage waveforms. The unstable Lissajous scan, which results from actuating the orthogonal axes of the MEMS mirror at highly disparate resonance frequencies, is optimized to fully sample 500x500 pixels at two frames per second. Optically sectioned fluorescence images of brain tissues are obtained in living mice to demonstrate the utility of this microscope for image-guided resections.


Journal of Biomedical Optics | 2008

Efficient rejection of scattered light enables deep optical sectioning in turbid media with low-numerical-aperture optics in a dual-axis confocal architecture

Jonathan T. C. Liu; Michael J. Mandella; James M. Crawford; Christopher H. Contag; Thomas D. Wang; Gordon S. Kino

Miniature endoscopic microscopes, with subcellular imaging capabilities, will enable in vivo detection of molecularly-targeted fluorescent probes for early disease detection. To optimize a dual-axis confocal microscope (DACM) design for this purpose, we use a tabletop instrument to determine the ability of this technology to perform optical sectioning deep within tissue. First, we determine how tissue scattering deteriorates the diffraction-limited transverse and vertical responses in reflectance imaging. Specifically, the vertical response of a DACM to a plane reflector is measured at various depths in a scattering phantom and compared with diffraction theory and Monte Carlo scattering simulations. Similarly, transverse line scans across a knife-edge target are performed at various depths in a scattering phantom. Second, as a practical demonstration of deep-tissue fluorescence microscopy that corroborates the findings from our scattering experiments, 3-D fluorescence images are obtained in thick human gastrointestinal mucosal specimens. Our results demonstrate efficient rejection of scattered light in a DACM, which enables deep optical sectioning in tissue with subcellular resolution that can distinguish between normal and premalignant pathologies.


Analytical Cellular Pathology | 2011

Point-of-care pathology with miniature microscopes.

Jonathan T. C. Liu; Nathan O. Loewke; Michael J. Mandella; Richard Levenson; James M. Crawford; Christopher H. Contag

Advances in optical designs are enabling the development of miniature microscopes that can examine tissue in situ for early anatomic and molecular indicators of disease, in real time, and at cellular resolution. These new devices will lead to major changes in how diseases are detected and managed, driving a shift from todays diagnostic paradigm of biopsy followed by histopathology and recommended therapy, to non-invasive point-of-care diagnosis with possible same-session definitive treatment. This shift may have major implications for the training requirements of future physicians to enable them to interpret real-time in vivo microscopic data, and will also shape the emerging fields of telepathology and telemedicine. Implementation of new technologies into clinical practice is a complex process that requires bridging gaps between clinicians, engineers and scientists. This article provides a forward-looking discussion of these issues, with a focus on malignant and pre-malignant lesions, by first highlighting some of the clinical areas where point-of-care in vivo microscopy could address unmet needs, and then by reviewing the technological challenges that are being addressed, or need to be addressed, for in vivo microscopy to become a standard clinical tool.


Journal of Quantitative Spectroscopy & Radiative Transfer | 2002

High-sensitivity absorption diagnostic for NO2 using a blue diode laser

Jonathan T. C. Liu; Ronald K. Hanson; Jay B. Jeffries

Abstract An improved diagnostic for monitoring NO 2 , over a temperature range of 300– 2000 K , has been developed utilizing a tunable diode laser at 390.130 nm . The advantage of this diagnostic over previous methods is its increased sensitivity and simplicity. High sensitivity is attainable because 390 nm is at the peak of the broad NO 2 absorption spectrum and the diode laser output is low-noise. In addition, the dense NO 2 A–X spectrum near 390 nm produces optical absorption that is nearly constant with pressure, simplifying interpretation. The NO 2 absorption cross-section at 390.130 nm was measured in a room-temperature flowing absorption cell, and between 500 and 1900 K in shock-heated NO 2 /Ar mixtures. The absorption cross-section was found to vary with temperature according to the linear relationship: σ, 10 −19 cm 2 =6.7−0.00198T( K ) , with an uncertainty of ±5%. We also demonstrate the utility of this diagnostic for chemical kinetics applications by studying shock-heated NO 2 decomposition.

Collaboration


Dive into the Jonathan T. C. Liu's collaboration.

Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar

Wibool Piyawattanametha

King Mongkut's Institute of Technology Ladkrabang

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Researchain Logo
Decentralizing Knowledge