José A. L. da Silva

Alkanes to carboxylic acids in aqueous medium: metal-free and metal-promoted highly efficient and mild conversions

A convenient and clean route to transform, in aqueous medium, various alkanes to carboxylic acids via single-pot carboxylation with CO and water, under mild conditions, has been achieved, proceeding efficiently and selectively even without any metal catalyst and any acid additive, at low temperatures; the relevant hydroxylating role of H(2)O and radical mechanisms are disclosed by radical-trap, H(2)(18)O and DFT studies.

Saccorhiza polyschides (phaeophyceae; phyllariaceae) A new source for vanadium-dependent haloperoxidases

Abstract Vanadium-dependent iodoperoxidases from the brown seaweed Saccorhiza polyschides (Lightfoot) Batters, collected at three different locations along the Portuguese west coast, were extracted, purified and characterized. Several extraction procedures were tested, including two-phase aqueous systems. The purification of the iodoperoxidases was achieved using hydrophobic interaction chromatography followed by chromatofocusing. It was possible to isolate three different isoforms of the enzyme, which show mainly iodoperoxidase activity. The three native enzymes have a relative M r around 125 kDa, and two subunits of M r about 64 kDa. Reactivation studies of the apoenzymes with several metal ions revealed that vanadium(V) was essential for enzymatic activity. These enzymes are remarkably thermostable, maintaining their maximum activity up to 50°. The kinetic parameters for the enzyme catalysed iodoperoxidase reaction were obtained at pH 6.1. In the concentration range studied (0.2–8 mM) there was no inhibition by H 2 O 2 whereas iodide inhibition was already apparent at the top values of the concentration range studied (2–25 mM).

Biological characterization of the antiproliferative potential of Co(II) and Sn(IV) coordination compounds in human cancer cell lines: a comparative proteomic approach.

Abstract Background: The discovery of cisplatin’s antitumor activity led to a great interest in the potential application of coordination compounds as chemotherapeutic agents. It is essential to identify new compounds that selectively inhibit tumor proliferation, evading secondary effects and resistance associated with chemotherapeutics. Methods: The in vitro antiproliferative potential of an organotin(IV) compound was evaluated using colorectal and hepatocellular carcinoma, mammary gland adenocarcinoma cell lines, and human fibroblasts. Tumor cell death was evaluated by fluorescence microscopy and flow cytometry for the Sn(IV) compound and also for a Co(II) compound bearing 1,10-phenanthroline-5,6-dione as ligand. Comparative proteomic analysis for both compounds was assessed in the colorectal cancer cell line. Results: The Sn(IV) compound presented a high cytotoxic effect in colorectal and hepatocellular carcinoma cell lines (IC50 of 0.238±0.011 μM, 0.199±0.003 μM, respectively), and a lower cytotoxicity in human fibroblasts. Both compounds induced cell apoptosis and promoted the overexpression of oxidative stress-related enzyme superoxide dismutase [Cu-Zn] (SODC). The Co(II) compound induced a decreased expression of anti-apoptotic proteins (translationally-controlled tumor protein and endoplasmin), and the Sn(IV) compound decreased expression of proteins involved in microtubule stabilization, TCTP, and cofilin-1. Conclusions: Our data reveals a high in vitro antiproliferative potential against cancer cell lines and a moderate selectivity promoted by the Sn(IV) compound. Proteomic analysis of Sn(IV) and Co(II) compounds in the colorectal cancer cell line allowed an insight to their mechanisms of action, particularly by affecting the expression of proteins typically deregulated in cancer, and also suggesting a promising therapeutic potential for both compounds.

Interactions of D-ribose with polyatomic anions, and alkaline and alkaline-earth cations: possible clues to environmental synthesis conditions in the pre-RNA world

The interaction of some of the most abundant anions in seawater (borate, sulfate and carbonate/bicarbonate) with D-ribose was studied by 1H, 11B and 13C NMR spectroscopy. The results confirmed that only borate improves the stability of D-ribose and favours significant amounts of the ribofuranose isomer, which is the form occurring in present day living organisms. The effect of cations (Na+, K+, Mg2+, Ca2+ and Sr2+) on ribose–borate-bound species was also studied, and it was found that the divalent cations induce a small increase in the relative amounts of ribopyranose isomers in solution and a corresponding decrease in the abundance of the ribofuranose isomers. It was also found that the stability of ribose–borate-bound species, when compared with free ribose over a wide range of temperature and pH values, is higher for compounds with borate, which are stable even at a relatively low pH (6.6) and a relatively high temperature (60 °C). The stability of ribose under moderate pH and relatively high temperature conditions, in the presence of species that occur in seawater, is important for the viability of the early synthetic steps that led to the first nucleotides, which predated the formation of more complex structures, such as RNA.

Purification and characterisation of vanadium haloperoxidases from the brown alga Pelvetia canaliculata

Two enzymes characterised as iodoperoxidases (PcI and PcII), with vanadium-dependent activity, have been purified from the brown alga Pelvetia canaliculata (L.) Decne et Thur. (Fucaceae, Phaeophyceae), collected in the Northern Portuguese coast, at Viana do Castelo. The relative molecular masses were 166 kDa for PcI and 416 kDa for PcII, as determined by gel filtration. SDS-PAGE shows that PcI has just one band corresponding to a subunit of 66 kDa, while PcII shows four bands (66, 72, 157 and 280 kDa). The following kinetic parameters have been determined from a steady-state analysis of the oxidation of iodide by H2O2: PcI, pHopt = 6.0, KM(I-) = 2.1 mM, KM(H2O2) = 110 microM, Ki(I-) = 127 mM; and PcII, pHopt = 6.5, KM(I-) = 2.4 mM, KM(H2O2) = 20 microM and Ki(I-) = 69 mM. These iodoperoxidases are thermostable, as also observed for vanadium bromo- and chloroperoxidases.

Antifungal Activity and Computational Study of Constituents from Piper divaricatum Essential Oil against Fusarium Infection in Black Pepper

Fusarium disease causes considerable losses in the cultivation of Piper nigrum, the black pepper used in the culinary world. Brazil was the largest producer of black pepper, but in recent years has lost this hegemony, with a significant reduction in its production, due to the ravages produced by the Fusarium solani f. sp. piperis, the fungus which causes this disease. Scientific research seeks new alternatives for the control and the existence of other Piper species in the Brazilian Amazon, resistant to disease, are being considered in this context. The main constituents of the oil of Piper divaricatum are methyleugenol (75.0%) and eugenol (10.0%). The oil and these two main constituents were tested individually at concentrations of 0.25 to 2.5 mg/mL against F. solani f. sp. piperis, exhibiting strong antifungal index, from 18.0% to 100.0%. The 3D structure of the β-glucosidase from Fusarium solani f. sp. piperis, obtained by homology modeling, was used for molecular docking and molecular electrostatic potential calculations in order to determine the binding energy of the natural substrates glucose, methyleugenol and eugenol. The results showed that β-glucosidase (Asp45, Arg113, Lys146, Tyr193, Asp225, Trp226 and Leu99) residues play an important role in the interactions that occur between the protein-substrate and the engenol and methyleugenol inhibitors, justifying the antifungal action of these two phenylpropenes against Fusarium solani f. sp. piperis.

Elemental composition of Demospongiae from the eastern Atlantic coastal waters

AbstractThe elemental composition (Al, Si, K, Ca, Ti, V, Cr, Mn, Fe, Ni, Cu, Zn, Br, Rb, Sr, Zr and Pb) of 30 coastal and two deep-sea Demospongiae specimens, belonging to 19 different species and ...

Combined Kinetic Studies and Computational Analysis on Kojic Acid Analogs as Tyrosinase Inhibitors

Tyrosinase is a key enzyme in melanin synthesis and widely distributed in plants and animals tissues. In mammals, this enzyme is related to pigment production, involved in wound healing, primary immune response and it can also contribute to catecholamines synthesis in the brain. Consequently, tyrosinase enzyme represents an attractive and selective target in the field of the medicine, cosmetics and bio-insecticides. In this paper, experimental kinetics and computational analysis were used to study the inhibition of tyrosinase by analogs of Kojic acid. The main interactions occurring between inhibitors-tyrosinase complexes and the influence of divalent cation (Cu2+) in enzymatic inhibition were investigated by using molecular docking, molecular dynamic simulations and electrostatic binding free energy by using the Linear Interaction Energy (LIE) method. The results showed that the electrostatic binding free energy are correlated with values of constant inhibition (r2 = 0.97).Thus, the model obtained here could contribute to future studies of this important system and, therefore, eventually facilitate development of tyrosinase inhibitors.

Amavadin and Homologues as Mediators of Water Oxidation

The vanadium(IV) N-hydroxyiminodicarboxylate complexes [V(HIDPA)2](2-) and [V(HIDA)2](2-), close models of the amavadin (a natural product from Amanita fungi lacking the V=O group but exhibiting a rare NO-bound oxyiminate moiety), are shown to be the first recognized complexes of the early transition metals (up to periodic Group 7) that mediate the oxidation of water. The reactions were analyzed by visible spectrophotometry, mass spectrometry, and measurement of evolved dioxygen using Ce(4+) as sacrificial oxidant. A mechanism proposed on the basis of DFT calculations involves the reversible oxidation to the mononuclear V(V)-{OṄ<} center, where the redox active oxyimino group plays a key role and metal oxidation state variation is only one unit. The more similar model of the metallobiomolecule, [V(HIDPA)2](2-), displays a lower oxidation rate than [V(HIDA)2](2-) but does not undergo appreciable degradation, in contrast to the latter.

From the RNA world to the RNA/protein world: contribution of some riboswitch-binding species?

Some amino acids and their formal derivatives, currently riboswitch-binding species, could have interacted with polyribonucletides in prebiotic environments, leading to the peptide formation. If the resulting compounds had led to a sustainable polymerization of amino acids and the new structures had catalytic activity, such would have been an important contribution to the transition from the RNA world to the RNA/Protein world.