José Maria Santos

Prioritizing barrier removal to improve functional connectivity of rivers

Summary 1. Freshwater systems are severely impacted by connectivity reduction due to the construction of dams and weirs. The breach of this longitudinal connectivity imperils freshwater fish species world-wide. There is thus an increasing need for numerical tools that help decisionmakers correctly allocate resources to prioritize restoration actions. 2. This study provides a methodology for prioritizing the removal of barriers. It is based on spatial graphs, which represent structural units as nodes and relationships between nodes as links, and uses habitat suitability modelling (Boosted Regression Trees) to weight nodes. To exemplify the application of this procedure, we used the Tagus River network and evaluated the impact of the dams (29 built between 1928 and 2004) on the occurrence of each of two fish species (Iberian barbel Luciobarbus bocagei – representing large potamodromous fish; and southern Iberian chub Squalius pyrenaicus – representing small water-column residents) and on the combination of both. 3. Results show that dam construction on the Tagus was responsible for a 484–544% reduction in river connectivity for different fish species. Actions to promote connectivity in just seven of the dams would increase connectivity by 350–372%. 4. The removal of a single barrier chosen through prioritization had a greater overall connectivity increase than the random removal of seven barriers. 5. Synthesis and applications. The proposed prioritization method, using spatial graphs and habitat suitability modelling, makes it possible to model the impact of the removal or placement of an insurmountable barrier on the overall functional connectivity of a river network, facilitating resource allocation and minimizing the impact of new barrier implementation.

Assessment of instream structures for habitat improvement for two critically endangered fish species

The number of fish habitat improvement schemes has greatly increased in response to the widespread degradation of aquatic ecosystems. However, many of these enhancement projects often fail to create expected habitat conditions, because they are rarely planned and executed with inputs from the species’ habitat requirements throughout their life histories, and it is frequently assumed that the implementation of a specific instream structure for habitat improvement will always benefit all species present. Using a 2D hydraulic model, the present study evaluates the potential habitat improvement for two critically endangered fish species—the Southwestern arched-mouth nase Iberochondrostoma almacai and the Arade chub Squalius aradensis—resulting from simulating the introduction of different instream structures (islands, lateral bays, and deflectors) in a modified Mediterranean river reach. The introduction of islands in the river channel was found to be the best improvement measure for YOY and juvenile nase and chub, as shown by increases in the mean annual Weighted Usable Area (WUA) of more than 100 and 50%, respectively, compared to the present conditions. On the other hand, the simulation with current deflectors proved to be the worst scenario, particularly for nase, with mean annual WUA decreasing by 3.6, 17.8 and 22.7% for YOY, juveniles and adults, respectively. The findings of this study point to the need to account for different species life-history stages when modelling the implementation of instream structures for habitat improvement and also provide a sound basis for future conservation-related studies conducted in Mediterranean rivers that harbour other threatened “sister” species.

Complex size-dependent habitat associations in potamodromous fish species

Knowledge of the distribution of species life stages at multiple spatial scales is fundamental to both a proper assessment of species management and conservation programmes and the ability to predict the consequences of human disturbances for river systems. The habitat requirements of three native cyprinid species—the Iberian barbel Barbus bocagei Steindachner, the Iberian straight-mouth nase Pseudochondrostoma polylepis (Steindachner), and the Northern straight-mouth nase Pseudochondrostoma duriense (Coelho)—were examined at 174 undisturbed or minimally disturbed sites in 8 river catchments across western Iberia, by modelling occurrence and counts of species life stages at two spatial scales—large (regional) and instream (local)—using hurdle models. All the life stages of the barbel showed a negative association with upstream high-gradient river reaches, whereas juvenile P. duriense favoured such areas. Stream width and openness were negatively related with the occurrence of juvenile and small adult barbel, but not with large adults. Juvenile nase, on the other hand, were found to be mainly confined to fast-flowing habitats with high instream cover and coarser substrata. Advanced life stages of the barbel were mainly associated with the “pure” regional and shared components, whereas the purely local attributes accounted for much of the model variation among nases, in particular juveniles, and juvenile barbel. The results of this study are useful for setting or refining management goals, and highlight the need to separately consider life stages when performing conservation-related studies of species distribution.

The organisation of fish assemblages in the regulated Lima basin, Northern Portugal

In order to understand the structure of fish assemblages in the modified Lima basin (Northern Portugal), two distinct datasets concerning the presence and abundance of fish species were subjected to multivariate analysis. On the River Lima two types of flow modification are present within kilometres of one another: (a) a reduced and constant flow due to hypolimnetic release; and (b) an intense and irregular flow. A comparison of their influence on fish assemblages revealed a gradient of assemblage types from tributaries to main river sites. The latter were characterised by a strong dominance of cyprinids, particularly Iberian barbel (Barbus bocagei). The former harboured two kinds of fish assemblages: those closer to the river mouth were dominated by the cyprinids Iberian chub (Squalius carolitertii) and Iberian nase (Chondrostoma polylepis), which were also frequently present in the main river; while in those further upstream the predominant species was the brown trout (Salmo trutta). Although explanatory variables such as distance from source, altitude, substrate coarseness and width were the primary correlates of fish assemblage composition, dam construction and flow regulation also had a significant effect upon assemblage structure, particularly by: i) reducing the importance of migratory species; ii) constraining the presence of trout in the regulated segments; and iii) simplifying the community, especially in the case of the constant and reduced flow regime.

Pool-type fishways: two different morpho-ecological cyprinid species facing plunging and streaming flows.

Fish are particularly sensitive to connectivity loss as their ability to reach spawning grounds is seriously affected. The most common way to circumvent a barrier to longitudinal connectivity, and to mitigate its impacts, is to implement a fish passage device. However, these structures are often non-effective for species with different morphological and ecological characteristics so there is a need to determine optimum dimensioning values and hydraulic parameters. The aim of this work is to study the behaviour and performance of two species with different ecological characteristics (Iberian barbel Luciobarbus bocagei–bottom oriented, and Iberian chub Squalius pyrenaicus–water column) in a full-scale experimental pool-type fishway that offers two different flow regimes–plunging and streaming. Results showed that both species passed through the surface notch more readily during streaming flow than during plunging flow. The surface oriented species used the surface notch more readily in streaming flow, and both species were more successful in moving upstream in streaming flow than in plunging flow. Streaming flow enhances upstream movement of both species, and seems the most suitable for fishways in river systems where a wide range of fish morpho-ecological traits are found.

Evaluating the Response of Biological Assemblages as Potential Indicators for Restoration Measures in an Intermittent Mediterranean River

Bioindicators are essential for detecting environmental degradation and for assessing the success of river restoration initiatives. River restoration projects require the identification of environmental and pressure gradients that affect the river system under study and the selection of suitable indicators to assess habitat quality before, during and after restoration. We assessed the response of benthic macroinvertebrates, fish, bird and macrophyte assemblages to environmental and pressure gradients from sites situated upstream and downstream of a cofferdam on the River Odelouca, an intermittent Mediterranean river in southwest Portugal. The Odelouca will be permanently dammed in 2010. Principal Component Analyses (PCA) of environmental and pressure variables revealed that most variance was explained by environmental factors that clearly separated sites upstream and downstream of the partially built cofferdam. The pressure gradient describing physical impacts to the banks and channel as a result of land use change was less distinct. Redundancy Analysis revealed significant levels of explained variance to species distribution patterns in relation to environmental and pressure variables for all 4 biological assemblages. Partial Redundancy analyses revealed high levels of redundancy for pH between groups and that the avifauna was best associated with pressures acting upon the system. Patterns in invertebrates and fish were associated with descriptors of habitat quality, although fish distribution patterns were affected by reduced connectivity. Procrustean and RELATE (Mantel test) analyses gave broadly similar results and supported these findings. We give suggestions on the suitability of key indicator groups such as benthic macroinvertebrates and endemic fish species to assess in stream habitat quality and appropriate restoration measures, such as the release of peak flow patterns that mimic intermittent Mediterranean systems to combat habitat fragmentation and reduced connectivity.

Modelling stream-fish functional traits in reference conditions: regional and local environmental correlates

Identifying the environmental gradients that control the functional structure of biological assemblages in reference conditions is fundamental to help river management and predict the consequences of anthropogenic stressors. Fish metrics (density of ecological guilds, and species richness) from 117 least disturbed stream reaches in several western Iberia river basins were modelled with generalized linear models in order to investigate the importance of regional- and local-scale abiotic gradients to variation in functional structure of fish assemblages. Functional patterns were primarily associated with regional features, such as catchment elevation and slope, rainfall, and drainage area. Spatial variations of fish guilds were thus associated with broad geographic gradients, showing (1) pronounced latitudinal patterns, affected mainly by climatic factors and topography, or (2) at the basin level, strong upstream-downstream patterns related to stream position in the longitudinal gradient. Maximum native species richness was observed in midsize streams in accordance with the river continuum concept. The findings of our study emphasized the need to use a multi-scale approach in order to fully assess the factors that govern the functional organization of biotic assemblages in ‘natural’ streams, as well as to improve biomonitoring and restoration of fluvial ecosystems.

Potamodromous fish movements under multiple stressors: Connectivity reduction and oxygen depletion.

Rivers are impacted by multiple stressors that can interact to create synergistic, additive or antagonistic effects, but experimental studies on fish encompassing more than one stressor are seldom found. Thus, there is the need to study stressors through multifactorial approaches that analyse the impact of fish exposure to multiple stressors and evaluate fish sensitivity to stressor combinations. Some of the most common impacts to Mediterranean rivers are of two natures: i) water abstraction and ii) diffuse pollution. Therefore, the present study aims at studying the responses of potamodromous fish facing combinations of: 1) a primary stressor (two levels of connectivity reduction due to water scarcity), and 2) a secondary stressor (three levels of oxygen depletion due to increase organic load - of anthropogenic nature). Schools of five wild fish from a cyprinid species (Luciobarbus bocagei) were placed in a flume, equipped with see-through sidewalls to allow for behavioural analysis, and subjected to different combinations of the stressors. Results show that at the unconnected level the primary stressor (lack of connectivity) overrode the effect of the secondary stressor (oxygen depletion), but when connectivity existed oxygen depletion caused a reduction of fish movements with decreasing oxygen concentrations. This multifactorial study contributes to improved prediction of fish responses upon actual or projected pressure scenarios.

Effect of flow regime hydraulics on passage performance of Iberian chub (Squalius pyrenaicus) (Günther, 1868) in an experimental pool-and-weir fishway

Dams and weirs strongly affect or interrupt the longitudinal connectivity of rivers, by limiting the movements of several fish species while altering and fragmenting habitats. Fishways, especially pool-type fishways, are used to diminish this impact by enabling fish to negotiate barriers. The aim of this work is to study the behaviour of a small-sized resident cyprinid fish, the Iberian chub—Squalius pyrenaicus (Günther, 1868)—within a prototype of a pool-type fishway, equipped with both surface notches and bottom orifices, and experiencing two different flow regimes, plunging and streaming. Results show that the fish tended to be more successful in their upstream movements under streaming flow and that, for this regime, the surface notch was the preferred route for upstream movements. Flow velocity patterns corroborated the results, showing that the plunging flow regime may have driven fish downstream, while the streaming flow regime may have attracted fish upstream. The plunging flow also prevented access of this surface-oriented species to the surface notch, effectively reducing the area available for transport. Thus, the streaming flow regime can be a sound option for this and other small-sized species, as it enhances fish movements through the fishway.

Do small barriers affect the movement of freshwater fish by increasing residency

River fragmentation due to artificial barriers directly impacts fish communities by limiting migratory movements. This work aims to understand how small barriers affect the movements of a potamodromous cyprinid species - the Iberian barbel (Luciobarbus bocagei (Steindachner, 1864)) - in a 5.6km upstream segment of a stream impacted only by the presence of physical barriers. Fish were marked with Visible Implant Elastomer tags (VIE), and barriers were seasonally characterized. A total of 683 fish were tagged, with 104 recaptures, during five sampling seasons (spring 2012 - early summer 2013). Eleven of the recaptured fish moved past a barrier, without any preference in terms of direction of movement. There were no differences in length, either between migrants and residents, or between upstream and downstream migrants. The results show that although barbel are able to negotiate small barriers, part of the population did not move between fragmented reaches - an indication that under such conditions, fish species populations may adjust their life-history strategy to augment residency as it was hypothesized from the results.