Joseph A. Fournier

Vibrational spectral signature of the proton defect in the three-dimensional H+(H2O)21 cluster

Blackjack water cluster detected Spectroscopy of protonated water clusters has played a pivotal role in elucidating the molecular arrangement of acid solutions. Whereas bulk liquids manifest broad spectral features, the cluster bands tend to be sharper. The 21-membered water cluster has for decades inspired particular interest on account of its stability and its place in the transition from two-dimensional to three-dimensional hydrogen-bonding network motifs, but the spectral signature of its bound proton has proved elusive. Fournier et al. have now detected this long-sought vibrational feature by applying an innovative ion cooling technique. Science, this issue p. 1009 An ion-cooling technique enables detection of a long-sought motif in the study of acid structure. The way in which a three-dimensional network of water molecules accommodates an excess proton is hard to discern from the broad vibrational spectra of dilute acids. The sharper bands displayed by cold gas-phase clusters, H+(H2O)n, are therefore useful because they encode the network-dependent speciation of the proton defect and yet are small enough to be accurately treated with electronic structure theory. We identified the previously elusive spectral signature of the proton defect in the three-dimensional cage structure adopted by the particularly stable H+(H2O)21 cluster. Cryogenically cooling the ion and tagging it with loosely bound deuterium (D2) enabled detection of its vibrational spectrum over the 600 to 4000 cm−1 range. The excess charge is consistent with a tricoordinated H3O+ moiety embedded on the surface of a clathrate-like cage.

Isomer-Specific IR-IR Double Resonance Spectroscopy of D2-Tagged Protonated Dipeptides Prepared in a Cryogenic Ion Trap.

Isomer-specific vibrational predissociation spectra are reported for the gas-phase GlySarH(+) and SarSarH(+) [Gly = glycine; Sar = sarcosine] ions prepared by electrospray ionization and tagged with weakly bound D2 adducts using a cryogenic ion trap. The contributions of individual isomers to the overlapping vibrational band patterns are completely isolated using a pump-probe photochemical hole-burning scheme involving two tunable infrared lasers and two stages of mass selection (hence IR(2)MS(2)). These patterns are then assigned by comparison with harmonic (MP2/6-311+G(d,p)) spectra for various possible conformers. Both systems occur in two conformations based on cis and trans configurations with respect to the amide bond. In addition to the usual single intramolecular hydrogen bond motif between the protonated amine and the nearby amide oxygen atom, cis-SarSarH(+) adopts a previous unreported conformation in which both amino NHs act as H-bond donors. The correlated red shifts in the NH donor and C═O acceptor components of the NH···O═C linkage to the acid group are unambiguously assigned in the double H-bonded conformer.

Snapshots of Proton Accommodation at a Microscopic Water Surface: Understanding the Vibrational Spectral Signatures of the Charge Defect in Cryogenically Cooled H(+)(H2O)(n=2-28) Clusters.

We review the role that gas-phase, size-selected protonated water clusters, H(+)(H2O)n, have played in unraveling the microscopic mechanics responsible for the spectroscopic behavior of the excess proton in bulk water. Because the larger (n ≥ 10) assemblies are formed with three-dimensional cage morphologies that more closely mimic the bulk environment, we report the spectra of cryogenically cooled (10 K) clusters over the size range 2 ≤ n ≤ 28, over which the structures evolve from two-dimensional arrangements to cages at around n = 10. The clusters that feature a complete second solvation shell around a surface-embedded hydronium ion yield spectral signatures of the proton defect similar to those observed in dilute acids. The origins of the large observed shifts in the proton vibrational signature upon cluster growth were explored with two types of theoretical analyses. First, we calculate the cubic and semidiagonal quartic force constants and use these in vibrational perturbation theory calculations to establish the couplings responsible for the large anharmonic red shifts. We then investigate how the extended electronic wave functions that are responsible for the shapes of the potential surfaces depend on the nature of the H-bonded networks surrounding the charge defect. These considerations indicate that, in addition to the sizable anharmonic couplings, the position of the OH stretch most associated with the excess proton can be traced to large increases in the electric fields exerted on the embedded hydronium ion upon formation of the first and second solvation shells. The correlation between the underlying local structure and the observed spectral features is quantified using a model based on Badgers rule as well as via the examination of the electric fields obtained from electronic structure calculations.

Spectroscopic snapshots of the proton-transfer mechanism in water

A view of acidic proton transport emerges in vibrational spectra of deuterated water clusters bound to a succession of bases. Frame-by-frame view of acidic transport Protons in acidic solution constantly hop from one water molecule to the next. In between the hopping, controversy lingers over the extent to which the proton either sticks largely to one water molecule in an Eigen motif or bridges two of them in a Zundel motif. It has been hard to probe this question directly because the distinguishing vibrational bands in bulk aqueous acid spectra are so broad. Wolke et al. studied deuterated prototypical Eigen clusters, D+(D2O)4, bound to an increasingly basic series of hydrogen bond acceptors (see the Perspective by Xantheas). These clusters displayed sharp bands in their vibrational spectra, highlighting a steadily evolving distortion toward a Zundel-like motif and pointing the way toward further investigations. Science, this issue p. 1131; see also p. 1101 The Grotthuss mechanism explains the anomalously high proton mobility in water as a sequence of proton transfers along a hydrogen-bonded (H-bonded) network. However, the vibrational spectroscopic signatures of this process are masked by the diffuse nature of the key bands in bulk water. Here we report how the much simpler vibrational spectra of cold, composition-selected heavy water clusters, D+(D2O)n, can be exploited to capture clear markers that encode the collective reaction coordinate along the proton-transfer event. By complexing the solvated hydronium “Eigen” cluster [D3O+(D2O)3] with increasingly strong H-bond acceptor molecules (D2, N2, CO, and D2O), we are able to track the frequency of every O-D stretch vibration in the complex as the transferring hydron is incrementally pulled from the central hydronium to a neighboring water molecule.

Persistence of dual free internal rotation in NH4(+)(H2O)·Hen=0-3 ion-molecule complexes: expanding the case for quantum delocalization in He tagging.

To explore the extent of the molecular cation perturbation induced by complexation with He atoms required for the application of cryogenic ion vibrational predissociation (CIVP) spectroscopy, we compare the spectra of a bare NH4(+)(H2O) ion (obtained using infrared multiple photon dissociation (IRMPD)) with the one-photon CIVP spectra of the NH4(+)(H2O)·He1-3 clusters. Not only are the vibrational band origins minimally perturbed, but the rotational fine structures on the NH and OH asymmetric stretching vibrations, which arise from the free internal rotation of the -OH2 and -NH3 groups, also remain intact in the adducts. To establish the location and the quantum mechanical delocalization of the He atoms, we carried out diffusion Monte Carlo (DMC) calculations of the vibrational zero point wave function, which indicate that the barriers between the three equivalent minima for the He attachment are so small that the He atom wave function is delocalized over the entire -NH3 rotor, effectively restoring C3 symmetry for the embedded -NH3 group.

Site-specific vibrational spectral signatures of water molecules in the magic H3O+(H2O)20 and Cs+(H2O)20 clusters

Significance Understanding the mechanics underlying the diffuse OH stretching spectrum of water is a grand challenge for contemporary physical chemistry. Water clusters play an increasingly important role in this endeavor, as they allow one to freeze and isolate the spectral behavior of relatively large assemblies with well-defined network morphologies. We exploit recently developed, hybrid instruments that integrate laser spectroscopy with cryogenic ion trap mass spectrometry to capture the H3O+ and Cs+ ions in cage structures formed by 20 water molecules. Their infrared spectra reveal a pattern of distinct transitions that is unprecedented for water networks in this size range. Theoretical analysis of these patterns then reveals the intramolecular distortions associated with water molecules at various sites in the 3D cages. Theoretical models of proton hydration with tens of water molecules indicate that the excess proton is embedded on the surface of clathrate-like cage structures with one or two water molecules in the interior. The evidence for these structures has been indirect, however, because the experimental spectra in the critical H-bonding region of the OH stretching vibrations have been too diffuse to provide band patterns that distinguish between candidate structures predicted theoretically. Here we exploit the slow cooling afforded by cryogenic ion trapping, along with isotopic substitution, to quench water clusters attached to the H3O+ and Cs+ ions into structures that yield well-resolved vibrational bands over the entire 215- to 3,800-cm−1 range. The magic H3O+(H2O)20 cluster yields particularly clear spectral signatures that can, with the aid of ab initio predictions, be traced to specific classes of network sites in the predicted pentagonal dodecahedron H-bonded cage with the hydronium ion residing on the surface.

Site-specific vibrational spectral signatures of water molecules in the magic H 3 O + (H 2 O) 20 and Cs + (H 2 O) 20 clusters

Significance Understanding the mechanics underlying the diffuse OH stretching spectrum of water is a grand challenge for contemporary physical chemistry. Water clusters play an increasingly important role in this endeavor, as they allow one to freeze and isolate the spectral behavior of relatively large assemblies with well-defined network morphologies. We exploit recently developed, hybrid instruments that integrate laser spectroscopy with cryogenic ion trap mass spectrometry to capture the H3O+ and Cs+ ions in cage structures formed by 20 water molecules. Their infrared spectra reveal a pattern of distinct transitions that is unprecedented for water networks in this size range. Theoretical analysis of these patterns then reveals the intramolecular distortions associated with water molecules at various sites in the 3D cages. Theoretical models of proton hydration with tens of water molecules indicate that the excess proton is embedded on the surface of clathrate-like cage structures with one or two water molecules in the interior. The evidence for these structures has been indirect, however, because the experimental spectra in the critical H-bonding region of the OH stretching vibrations have been too diffuse to provide band patterns that distinguish between candidate structures predicted theoretically. Here we exploit the slow cooling afforded by cryogenic ion trapping, along with isotopic substitution, to quench water clusters attached to the H3O+ and Cs+ ions into structures that yield well-resolved vibrational bands over the entire 215- to 3,800-cm−1 range. The magic H3O+(H2O)20 cluster yields particularly clear spectral signatures that can, with the aid of ab initio predictions, be traced to specific classes of network sites in the predicted pentagonal dodecahedron H-bonded cage with the hydronium ion residing on the surface.

Activation of Methane by FeO+: Determining Reaction Pathways through Temperature-Dependent Kinetics and Statistical Modeling

The temperature dependences of the rate constants and product branching ratios for the reactions of FeO(+) with CH4 and CD4 have been measured from 123 to 700 K. The 300 K rate constants are 9.5 × 10(-11) and 5.1 × 10(-11) cm(3) s(-1) for the CH4 and CD4 reactions, respectively. At low temperatures, the Fe(+) + CH3OH/CD3OD product channel dominates, while at higher temperatures, FeOH(+)/FeOD(+) + CH3/CD3 becomes the majority channel. The data were found to connect well with previous experiments at higher translational energies. The kinetics were simulated using a statistical adiabatic channel model (vibrations are adiabatic during approach of the reactants), which reproduced the experimental data of both reactions well over the extended temperature and energy ranges. Stationary point energies along the reaction pathway determined by ab initio calculations seemed to be only approximate and were allowed to vary in the statistical model. The model shows a crossing from the ground-state sextet surface to the excited quartet surface with large efficiency, indicating that both states are involved. The reaction bottleneck for the reaction is found to be the quartet barrier, for CH4 modeled as -22 kJ mol(-1) relative to the sextet reactants. Contrary to previous rationalizations, neither less favorable spin-crossing at increased energies nor the opening of additional reaction channels is needed to explain the temperature dependence of the product branching fractions. It is found that a proper treatment of state-specific rotations is crucial. The modeled energy for the FeOH(+) + CH3 channel (-1 kJ mol(-1)) agrees with the experimental thermochemical value, while the modeled energy of the Fe(+) + CH3OH channel (-10 kJ mol(-1)) corresponds to the quartet iron product, provided that spin-switching near the products is inefficient. Alternative possibilities for spin switching during the reaction are considered. The modeling provides unique insight into the reaction mechanisms as well as energetic benchmarks for the reaction surface.

Helical C2 Structure of Perfluoropentane and the C2v Structure of Perfluoropropane

Saturated hydrocarbons have structures with completely staggered bonds and dihedral angles of 180 degrees . Substituting hydrogen by fluorine results in a slight shift from 180 degrees , giving rise to a helical structure. X-ray diffraction studies on fibers and computational studies on perfluoroalkanes estimate a dihedral angle of about 17 degrees from the trans position. The rotational spectra of perfluoropentane and its three (13)C isotopomers have been observed and assigned using a pulsed-jet Fourier transform microwave spectrometer. The rotational constants for the parent species are A 990.6394(3) MHz, B 314.0002(1) MHz, and C 304.3703(1) MHz, respectively. The determination of an exact dihedral angle has been challenging, as the helical twist has proven to be quite sensitive to the structural inputs and constraints. A series of r(0) structures incorporating various model constraints and a Kraitchman analysis gives a range of 13-19 degrees for the torsional angle. An objective approach, which only assumes overall C(2) symmetry, is to scale the principal coordinates from ab initio models by the square root of the ratio of the observed second moments to the computed second moments. The scaled structures of computed models at various levels of theory reproduce the parent second moments exactly and the (13)C second moments very well, giving a dihedral angle of 17 +/- 1 degrees from trans. The microwave spectrum of perfluoropropane has also been observed and assigned. The rotational constants are A 1678.5982(9) MHz, B 900.1968(10) MHz, and C 955.3216(11) MHz, respectively. Unlike longer perfluoroalkanes, perfluoropropane has a nonhelical, C(2v) structure. Computations are in excellent agreement with experimental results.

Ionic liquids from the bottom up: local assembly motifs in [EMIM][BF4] through cryogenic ion spectroscopy.

To clarify the intramolecular distortions exhibited by the complementary ions in the archetypal ionic liquid 1-ethyl-3-methylimidazolium tetrafluoroborate [EMIM][BF4], we report the vibrational spectra of the isolated ionic constituents and small aggregates cooled to about 10 K. Deuteration of bare EMIM(+) at the C(2) position, the putative hydrogen bond donating group, establishes that the observed bulk red shift is too small (<10 cm(-1)) for hydrogen bonding to be a dominant structural feature. We then analyze how the vibrational patterns evolve with increasing size to identify the spectral signatures of well-defined structural motifs in the growing assembly. Surprisingly, the main features of the bulk spectrum are already developed in the cluster with a single BF4 (-) anion sandwiched between just two EMIM(+) cations. We suggest that this local motif, while not strongly hydrogen bonded, nonetheless induces considerable intensity in the C(2)H stretches and is a robust feature in the local molecular structure of the liquid.