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Dive into the research topics where Josephine Y. Lee is active.

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Featured researches published by Josephine Y. Lee.


Proceedings of the National Academy of Sciences of the United States of America | 2012

The intestinal stem cell markers Bmi1 and Lgr5 identify two functionally distinct populations

Kelley S. Yan; Luis A. Chia; Xingnan Li; Akifumi Ootani; James Su; Josephine Y. Lee; Nan Su; Yuling Luo; Sarah C. Heilshorn; Manuel R. Amieva; Eugenio Sangiorgi; Mario R. Capecchi; Calvin J. Kuo

The small intestine epithelium undergoes rapid and continuous regeneration supported by crypt intestinal stem cells (ISCs). Bmi1 and Lgr5 have been independently identified to mark long-lived multipotent ISCs by lineage tracing in mice; however, the functional distinctions between these two populations remain undefined. Here, we demonstrate that Bmi1 and Lgr5 mark two functionally distinct ISCs in vivo. Lgr5 marks mitotically active ISCs that exhibit exquisite sensitivity to canonical Wnt modulation, contribute robustly to homeostatic regeneration, and are quantitatively ablated by irradiation. In contrast, Bmi1 marks quiescent ISCs that are insensitive to Wnt perturbations, contribute weakly to homeostatic regeneration, and are resistant to high-dose radiation injury. After irradiation, however, the normally quiescent Bmi1+ ISCs dramatically proliferate to clonally repopulate multiple contiguous crypts and villi. Clonogenic culture of isolated single Bmi1+ ISCs yields long-lived self-renewing spheroids of intestinal epithelium that produce Lgr5-expressing cells, thereby establishing a lineage relationship between these two populations in vitro. Taken together, these data provide direct evidence that Bmi1 marks quiescent, injury-inducible reserve ISCs that exhibit striking functional distinctions from Lgr5+ ISCs and support a model whereby distinct ISC populations facilitate homeostatic vs. injury-induced regeneration.


Gastroenterology | 2011

Tolerance rather than immunity protects from Helicobacter pylori-induced gastric preneoplasia.

Isabelle C. Arnold; Josephine Y. Lee; Manuel R. Amieva; Axel Roers; Richard A. Flavell; Tim Sparwasser; Anne Müller

BACKGROUND & AIMS Chronic infection with the bacterial pathogen Helicobacter pylori causes gastric disorders, ranging from chronic gastritis to gastric adenocarcinoma. Only a subset of infected persons will develop overt disease; most remains asymptomatic despite lifelong colonization. This study aims to elucidate the differential susceptibility to H pylori that is found both across and within populations. METHODS We have established a C57BL/6 mouse model of H pylori infection with a strain that is capable of delivering the virulence factor cytotoxin-associated gene A (CagA) into host cells through the activity of a Cag-pathogenicity island-encoded type IV secretion system. RESULTS Mice infected at 5-6 weeks of age with CagA(+)H pylori rapidly develop gastritis, gastric atrophy, epithelial hyperplasia, and metaplasia in a type IV secretion system-dependent manner. In contrast, mice infected during the neonatal period with the same strain are protected from preneoplastic lesions. Their protection results from the development of H pylori-specific peripheral immunologic tolerance, which requires transforming growth factor-β signaling and is mediated by long-lived, inducible regulatory T cells, and which controls the local CD4(+) T-cell responses that trigger premalignant transformation. Tolerance to H pylori develops in the neonatal period because of a biased ratio of T-regulatory to T-effector cells and is favored by prolonged low-dose exposure to antigen. CONCLUSIONS Using a novel CagA(+)H pylori infection model, we report here that the development of tolerance to H pylori protects from gastric cancer precursor lesions. The age at initial infection may thus account for the differential susceptibility of infected persons to H pylori-associated disease manifestations.


Journal of Clinical Investigation | 2013

Iron deficiency accelerates Helicobacter pylori–induced carcinogenesis in rodents and humans

Jennifer M. Noto; Jennifer A. Gaddy; Josephine Y. Lee; M. Blanca Piazuelo; David B. Friedman; Daniel C. Colvin; Judith Romero-Gallo; Giovanni Suarez; John T. Loh; James C. Slaughter; Shumin Tan; Douglas R. Morgan; Keith T. Wilson; Luis Eduardo Bravo; Pelayo Correa; Timothy L. Cover; Manuel R. Amieva; Richard M. Peek

Gastric adenocarcinoma is strongly associated with Helicobacter pylori infection; however, most infected persons never develop this malignancy. H. pylori strains harboring the cag pathogenicity island (cag+), which encodes CagA and a type IV secretion system (T4SS), induce more severe disease outcomes. H. pylori infection is also associated with iron deficiency, which similarly augments gastric cancer risk. To define the influence of iron deficiency on microbial virulence in gastric carcinogenesis, Mongolian gerbils were maintained on iron-depleted diets and infected with an oncogenic H. pylori cag+ strain. Iron depletion accelerated the development of H. pylori-induced premalignant and malignant lesions in a cagA-dependent manner. H. pylori strains harvested from iron-depleted gerbils or grown under iron-limiting conditions exhibited enhanced virulence and induction of inflammatory factors. Further, in a human population at high risk for gastric cancer, H. pylori strains isolated from patients with the lowest ferritin levels induced more robust proinflammatory responses compared with strains isolated from patients with the highest ferritin levels, irrespective of histologic status. These data demonstrate that iron deficiency enhances H. pylori virulence and represents a measurable biomarker to identify populations of infected persons at high risk for gastric cancer.


Gastroenterology | 2015

Helicobacter pylori Activates and Expands Lgr5+ Stem Cells Through Direct Colonization of the Gastric Glands

Michael Sigal; Michael E. Rothenberg; Catriona Y. Logan; Josephine Y. Lee; Ryan W. Honaker; Rachel L. Cooper; Ben Passarelli; Margarita Camorlinga; Donna M. Bouley; Guillermo Alvarez; Roel Nusse; Javier Torres; Manuel R. Amieva

BACKGROUND & AIMS Helicobacter pylori infection is the main risk factor for gastric cancer. We characterized the interactions of H pylori with gastric epithelial progenitor and stem cells in humans and mice and investigated how these interactions contribute to H pylori-induced pathology. METHODS We used quantitative confocal microscopy and 3-dimensional reconstruction of entire gastric glands to determine the localizations of H pylori in stomach tissues from humans and infected mice. Using lineage tracing to mark cells derived from leucine-rich repeat-containing G-protein coupled receptor 5-positive (Lgr5(+)) stem cells (Lgr5-eGFP-IRES-CreERT2/Rosa26-TdTomato mice) and in situ hybridization, we analyzed gastric stem cell responses to infection. Isogenic H pylori mutants were used to determine the role of specific virulence factors in stem cell activation and pathology. RESULTS H pylori grow as distinct bacterial microcolonies deep in the stomach glands and interact directly with gastric progenitor and stem cells in tissues from mice and humans. These gland-associated bacteria activate stem cells, increasing the number of stem cells, accelerating Lgr5(+) stem cell proliferation, and up-regulating expression of stem cell-related genes. Mutant bacteria with defects in chemotaxis that are able to colonize the stomach surface but not the antral glands in mice do not activate stem cells. In addition, bacteria that are unable to inject the contact-dependent virulence factor CagA into the epithelium colonized stomach glands in mice, but did not activate stem cells or produce hyperplasia to the same extent as wild-type H pylori. CONCLUSIONS H pylori colonize and manipulate the progenitor and stem cell compartments, which alters turnover kinetics and glandular hyperplasia. Bacterial ability to alter the stem cells has important implications for gastrointestinal stem cell biology and H pylori-induced gastric pathology.


Mbio | 2011

ChePep Controls Helicobacter pylori Infection of the Gastric Glands and Chemotaxis in the Epsilonproteobacteria

Michael R. Howitt; Josephine Y. Lee; Paphavee Lertsethtakarn; Roger Vogelmann; Lydia-Marie Joubert; Karen M. Ottemann; Manuel R. Amieva

ABSTRACT Microbes use directed motility to colonize harsh and dynamic environments. We discovered that Helicobacter pylori strains establish bacterial colonies deep in the gastric glands and identified a novel protein, ChePep, necessary to colonize this niche. ChePep is preferentially localized to the flagellar pole. Although mutants lacking ChePep have normal flagellar ultrastructure and are motile, they have a slight defect in swarming ability. By tracking the movement of single bacteria, we found that ∆ChePep mutants cannot control the rotation of their flagella and swim with abnormally frequent reversals. These mutants even sustain bursts of movement backwards with the flagella pulling the bacteria. Genetic analysis of the chemotaxis signaling pathway shows that ChePep regulates flagellar rotation through the chemotaxis system. By examining H. pylori within a microscopic pH gradient, we determined that ChePep is critical for regulating chemotactic behavior. The chePep gene is unique to the Epsilonproteobacteria but is found throughout this diverse group. We expressed ChePep from other members of the Epsilonproteobacteria, including the zoonotic pathogen Campylobacter jejuni and the deep sea hydrothermal vent inhabitant Caminibacter mediatlanticus, in H. pylori and found that ChePep is functionally conserved across this class. ChePep represents a new family of chemotaxis regulators unique to the Epsilonproteobacteria and illustrates the different strategies that microbes have evolved to control motility. IMPORTANCE Helicobacter pylori strains infect half of all humans worldwide and contribute to the development of peptic ulcers and gastric cancer. H. pylori cannot survive within the acidic lumen of the stomach and uses flagella to actively swim to and colonize the protective mucus and epithelium. The chemotaxis system allows H. pylori to navigate by regulating the rotation of its flagella. We identified a new protein, ChePep, which controls chemotaxis in H. pylori. ChePep mutants fail to colonize the gastric glands of mice and are completely outcompeted by normal H. pylori. Genes encoding ChePep are found only in the class Epsilonproteobacteria, which includes the human pathogen Campylobacter jejuni and environmental microbes like the deep-sea hydrothermal vent colonizer Caminibacter mediatlanticus, and we show that ChePep function is conserved in this class. Our study identifies a new colonization factor in H. pylori and also provides insight into the control and evolution of bacterial chemotaxis. Helicobacter pylori strains infect half of all humans worldwide and contribute to the development of peptic ulcers and gastric cancer. H. pylori cannot survive within the acidic lumen of the stomach and uses flagella to actively swim to and colonize the protective mucus and epithelium. The chemotaxis system allows H. pylori to navigate by regulating the rotation of its flagella. We identified a new protein, ChePep, which controls chemotaxis in H. pylori. ChePep mutants fail to colonize the gastric glands of mice and are completely outcompeted by normal H. pylori. Genes encoding ChePep are found only in the class Epsilonproteobacteria, which includes the human pathogen Campylobacter jejuni and environmental microbes like the deep-sea hydrothermal vent colonizer Caminibacter mediatlanticus, and we show that ChePep function is conserved in this class. Our study identifies a new colonization factor in H. pylori and also provides insight into the control and evolution of bacterial chemotaxis.


The Journal of Infectious Diseases | 2015

Regulation of Helicobacter pylori Virulence Within the Context of Iron Deficiency

Jennifer M. Noto; Josephine Y. Lee; Jennifer A. Gaddy; Timothy L. Cover; Manuel R. Amieva; Richard M. Peek

Helicobacter pylori strains that harbor the oncoprotein CagA increase gastric cancer risk, and this risk is augmented under iron-deficient conditions. We demonstrate here that iron depletion induces coccoid morphology in strains lacking cagA. To evaluate the stability of augmented H. pylori virulence phenotypes stimulated by low-iron conditions, H. pylori isolated from iron-depleted conditions in vivo were serially passaged in vitro. Long-term passage decreased the ability of hypervirulent strains to translocate CagA or induce interleukin 8, indicating that hypervirulent phenotypes stimulated by low-level iron conditions are reversible. Therefore, rectifying iron deficiency may attenuate disease among H. pylori-infected persons with no response to antibiotics.


Gastroenterology | 2013

Sa1864 Iron Deficiency Reveals an Aberrant Morphology Phenotype Exhibited by CagA-Deficient Helicobacter pylori Strains

Jennifer M. Noto; Josephine Y. Lee; Jennifer A. Gaddy; Judith Romero-Gallo; Timothy L. Cover; Manuel R. Amieva; Richard M. Peek

Helicobacter pylori is the strongest known risk factor for gastric adenocarcinoma; however, most infected individuals never develop this malignancy. H. pylori strains harboring the cag pathogenicity island, which encodes CagA and a type IV secretion system (T4SS), augment cancer risk. In conjunction with bacterial determinants, environmental conditions such as iron deficiency influence disease outcomes. We previously reported that iron depletion accelerates the development of H. pylori-induced carcinogenesis in a cagA-dependent manner and that CagA is necessary for H. pylori survival in vitro and in vivo under iron-deficient conditions. To define mechanisms that regulate these CagA-dependent phenotypes, we infected Mongolian gerbils with the carcinogenic cag+ H. pylori strain 7.13, or a 7.13 cagAisogenic mutant under iron-replete or iron-depleted conditions. Localization, distribution, and morphology of H. pylori were assessed six weeks post-infection by immunofluorescence and in vivo confocal microscopy. Under iron-replete conditions, the H. pylori cagAisogenic mutant exhibited an elongated and spiral-like morphology similar to wild-type strain 7.13; however, iron depletion induced shortened, rounded, and coccoid morphologies in the cagAmutant, but not the wild-type strain. To investigate this phenotype in greater depth, scanning electron microscopy was performed on gerbil gastric tissue sections, which confirmed aberrant coccoid morphology of cagA-deficient strains only under iron-depleted conditions. To directly assess the effects of iron depletion on this phenotype, wild-type H. pylori strain 7.13 and the cagAisogenic mutant were grown in vitro under iron-replete or iron-restricted conditions. Wild-type strain 7.13 maintained a characteristic spiral morphology under iron-replete and iron-restricted conditions; however, consistent with our in vivo observations, conditions of iron restriction induced a coccoid-like morphology in the 7.13 cagAmutant strain, which was abrogated following the addition of exogenous iron. These data demonstrate that loss of cagA alters H. pylori morphology in an iron-dependent manner, which is reversible following iron supplementation. Collectively, these phenotypes likely contribute to impaired growth and colonization observed with the cagAisogenic mutant under iron-depleted conditions in vivo and implicate CagA and the type IV secretion system as mediators of nutrient acquisition and survival under austere conditions within the gastric niche.


Journal of Clinical Oncology | 2018

Facile single cell profiling and clonotype analysis of NSCLC immune microenvironments.

Ameen A. Salahudeen; Junjie Zhu; Jihang Ju; Valeria Giangarra; Luz Montesclaros; Jerald Sapida; Osman Sharifi; Josephine Y. Lee; Dhananjay Wagh; John A. Coller; Joel W. Neal; Sukhmani K. Padda; Heather A. Wakelee; Chiara Sabatti; Calvin J. Kuo


Cancer Research | 2018

Abstract 1013: Analyzing infiltrating B cell populations in the tumor microenvironment using single cell transcriptomics

S.E. Taylor; Stéphane C. Boutet; Valeria Giangarra; Grace X. Y. Zheng; Alvaro Martinez Barrio; Luz Montesclaros; Josephine Y. Lee; Samuel Marrs; Kevin J. Wu; Paul Ryvkin; Tarjei S. Mikkelsen; Deanna M. Church


Cancer Research | 2018

Abstract 281: Identifying genetic variation and cellular heterogeneity with a comprehensive cancer analysis toolkit

Sarah Garcia; Rajiv Bharadwaj; Stéphane C. Boutet; Claudia Catalanotti; Valeria Giangerra; Josephine Y. Lee; Jessica M. Terry; Stephen R. Williams; Grace X. Y. Zheng; Tarjei S. Mikkelsen; Michael Schnall-Levin; Ben Hindson; Deanna M. Church

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Jennifer M. Noto

Vanderbilt University Medical Center

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Richard M. Peek

Vanderbilt University Medical Center

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Grace X. Y. Zheng

Massachusetts Institute of Technology

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Jennifer A. Gaddy

Vanderbilt University Medical Center

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Judith Romero-Gallo

Vanderbilt University Medical Center

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