Katashi Kubo

Distribution of photoperiod-insensitive alleles Ppd-B1a and Ppd-D1a and their effect on heading time in Japanese wheat cultivars

The genotypes of photoperiod response genes Ppd-B1 and Ppd-D1 in Japanese wheat cultivars were determined by a PCR-based method, and heading times were compared among genotypes. Most of the Japanese wheat cultivars, except those from the Hokkaido region, carried the photoperiod-insensitive allele Ppd-D1a, and heading was accelerated 10.3 days compared with the Ppd-D1b genotype. Early cultivars with Ppd-D1a may have been selected to avoid damage from preharvest rain. In the Hokkaido region, Ppd-D1a frequency was lower and heading date was late regardless of Ppd-D1 genotype, suggesting another genetic mechanism for late heading in Hokkaido cultivars. In this study, only 11 cultivars proved to carry Ppd-B1a, and all of them carried another photoperiod-insensitive allele, Ppd-D1a. The Ppd-B1a/Ppd-D1a genotype headed 6.7 days earlier than the Ppd-B1b/Ppd-D1a genotype, indicating a significant effect of Ppd-B1a in the genetic background with Ppd-D1a. Early-maturity breeding in Japan is believed to be accelerated by the introduction of the Ppd-B1a allele into medium-heading cultivars carrying Ppd-D1a. Pedigree analysis showed that Ppd-B1a in three extra-early commercial cultivars was inherited from ‘Shiroboro 21’ by early-heading Chugoku lines bred at the Chugoku Agriculture Experimental Station.

Differences in Cadmium Accumulation and Root Morphology in Seedlings of Japanese Wheat Varieties with Distinctive Grain Cadmium Concentration

Abstract A low cadmium (Cd) concentration in wheat grain is desirable because of Cd toxicity to humans. Grain Cd concentrations in Japanese wheat differed among the varieties in previous study. In this study, we hypothesized that the varieties with a low concentration of Cd in grain have (1) low Cd uptake from the soil through the roots during early growth and/or (2) low Cd translocation from the roots to shoots, and also, that (3) Cd uptake from soil is affected by root morphology. These hypotheses were verified by investigating the concentration and quantity of Cd in root, shoot and leaf tissues, and examining the root morphology of young seedlings of wheat varieties with high and low grain Cd concentrations. Seedlings of ‘Kitahonami’ and ‘Nanbukomugi’ which had low grain Cd concentration (low Cd/G varieties) had a lower Cd quantity in whole plant tissues than ‘Nishikazekomugi’ and ‘Kitakamikomugi’ which had high grain Cd concentration (high Cd/G varieties) during early growth. Low Cd/G varieties also showed lower root to shoot (aerial parts) translocation of Cd than high Cd/G varieties. Seedlings of low Cd/G varieties showed less root branching than high Cd/G varieties. Root frequency showed a significant positive correlation with Cd quantity in whole plant tissues. These results suggest that low Cd/G varieties used in this study have low Cd uptake and translocation from the roots to shoots during early growth, and furthermore, that low Cd uptake at the seedling stage may relate to slow and/or limited development of branching roots.

Cadmium Concentration in Grains of Japanese Wheat Cultivars : Genotypic Difference and Relationship with Agronomic Characteristics

The contamination of cadmium (Cd) into the food chain can be harmful because Cd causes chronic health problems. To evaluate the breeding potential reducing the Cd concentration in wheat grain, we compared Cd concentrations in 237 wheat genotypes including Japanese landraces, Japanese cultivars and introduced alien cultivars for breeding using grain samples collected from upland fields in 2004−5 and 2005−6 growing seasons. The Cd concentration in wheat grain significantly varied with the growing seasons and with the experimental fields. Cultivars bred in northern Japan, including the recent Japanese leading cultivar ‘Hokushin’, tended to have a low Cd concentration in grain compared with that bred in central and southern Japan. Simple correlation analysis between Cd concentration in grain and agronomic characteristics revealed that the Cd concentration in grain showed significant negative correlations with stem number, culm length and spikelet number per spike, and showed significant positive correlation with SPAD value (chlorophyll content) of flag leaf. Stepwise multipleregression analysis showed that the genotypic variation of Cd concentration in grain was associated with the culm length and spiklet number per spike. This study clarified the geographical pattern of genotypes with different Cd concentrations in grain in Japanese wheat cultivars. Cultivars originating from northern Japan may be useful genetic resources to develop cultivars with a low Cd concentration in grain to be grown in the areas where Cd accumulation in wheat grain is a problem.

Genotypic Variation of the Ability of Root to Penetrate Hard Soil Layers among Japanese Wheat Cultivars

Abstract The hard soil in the field is a major constraint for the cereal production because it mechanically restricts the root expansion and water absorption. The ability of root to penetrate into the hard soil is an important factor affecting yield stability of wheat (Triticum aestivum L.) under hard soil and drought conditions. We investigated the variation in the penetrating ability of roots (PA) among Japanese wheat cultivars and its relationship with other shoot and root characters to acquire basic information to develop the cultivars with a higher PA. The evaluation was conducted by the two experiments using the two groups of cultivars: 1) 43 Hokkaido cultivars in the first experiment, 2) 38 Honsyu, including Shikoku and Kyusyu, cultivars in the second experiment. In each experiment, one seedling of each cultivar was grown in a pot with a disc made of paraffin and Vaseline mixture (PV) as a substitute for the hard soil layer. The number of roots penetrating through the PV disc per plant (NRP), the number of seminal and crown roots reached the PV disc per plant (NRR) and the penetration index (PI = NRP/NRR) of each cultivar were evaluated as the traits related to PA. NRP significantly varied with the cultivar from 4.0 to 29.7 and 3.0 to 22.0 in the first and second experiments, respectively. NRP were significantly correlated with NRR (r=0.644** in the first and r=0.477** in the second experiment) and PI (r=0.863** in the first and r=0.811** in the second experiment), but the relationships between NRR and PI were not significant (r=0.260 in the first and r=0.190 in the second experiment). NRR was significantly correlated with the degree of winter growth habit (requirement of vernalization), root dry weight (DW) above the PV disc, the number of stems and leaf DW in each population. Correlations between PI and other characters were low or not significant. These results indicate that a large genotypic variation exists among Japanese wheat cultivars in NRP, and that PI is a suitable indicator of PA. Cultivars with a high PA detected in this study will be useful genetic resources of wheat to improve the yield stability under drought and hard soil conditions.

Variations for Fusarium head blight resistance associated with genomic diversity in different sources of the resistant wheat cultivar 'Sumai 3'

Fusarium head blight (FHB), caused by Fusarium graminearum, is a serious disease of wheat (Triticum aestivum L.) associated with contamination by the mycotoxin deoxynivalenol (DON). The FHB-resistant wheat cultivar ‘Sumai 3’ has been used extensively around the world. The existence of variation in FHB resistance among ‘Sumai 3’ accessions has been discussed. In this study, genetic variation among ‘Sumai 3’ accessions collected from six countries were identified using SSR markers; our results demonstrate unique chromosome regions in Sumai 3-AUT and Sumai 3-JPN (‘Sumai 3’ accessions from Austria and Japan, respectively). Field evaluation indicated strong resistance to FHB in Sumai 3-AUT. The polymorphic rate (number of polymorphic markers/number of available markers × 100) based on a DArT array was 12.5% between the two ‘Sumai 3’ accessions. Genotyping for DNA markers flanking FHB-resistant quantitative trait loci (QTLs) revealed genetic variations for the QTL regions on 5AS and 2DS; however, no variation was observed for the QTL regions on 3BS and 6B. Thus, the variation in FHB resistance among ‘Sumai 3’ accessions in the field is due to genetic diversity.

Distribution of photoperiod-insensitive allele Ppd-A1a and its effect on heading time in Japanese wheat cultivars

The Ppd-A1 genotype of 240 Japanese wheat cultivars and 40 foreign cultivars was determined using a PCR-based method. Among Japanese cultivars, only 12 cultivars, all of which were Hokkaido winter wheat, carried the Ppd-A1a allele, while this allele was not found in Hokkaido spring wheat cultivars or Tohoku-Kyushu cultivars. Cultivars with a photoperiod-insensitive allele headed 6.9–9.8 days earlier in Kanto and 2.5 days earlier in Hokkaido than photoperiod-sensitive cultivars. The lower effect of photoperiod-insensitive alleles observed in Hokkaido could be due to the longer day-length at the spike formation stage compared with that in Kanto. Pedigree analysis showed that ‘Purple Straw’ and ‘Tohoku 118’ were donors of Ppd-A1a and Ppd-D1a in Hokkaido wheat cultivars, respectively. Wheat cultivars recently developed in Hokkaido carry photoperiod-insensitive alleles at a high frequency. For efficient utilization of Ppd-1 alleles in the Hokkaido wheat-breeding program, the effect of Ppd-1 on growth pattern and grain yield should be investigated. Ppd-A1a may be useful as a unique gene source for fine tuning the heading time in the Tohoku-Kyushu region since the effect of Ppd-A1a on photoperiod insensitivity appears to differ from the effect of Ppd-B1a and Ppd-D1a.

Influence of the nonexchangeable potassium of mica on radiocesium uptake by paddy rice

A pot cultivation experiment was conducted to elucidate the influence of the nonexchangeable potassium (K) of mica on radiocesium ((137)Cs) uptake by paddy rice (Oryza sativa L. cv. Koshihikari), and to evaluate the potential of mica application as a countermeasure to reduce radiocesium transfer from soil to paddy rice. The increase in the exchangeable K concentrations of soils, measured before planting, due to mica (muscovite, biotite, and phlogopite) application was negligible. However, in trioctahedral mica (biotite and phlogopite)-treated soil, the release of nonexchangeable K from the mica interlayer maintained the soil-solution K at a higher level during the growing season in comparison to the control, and consequently decreased the (137)Cs transfer factor for brown rice (TF). The sodium tetraphenylboron (TPB)-extractable K concentration of the soils, measured before planting, was strongly negatively correlated with the TF, whereas the exchangeable K concentration of the soils, also measured before planting, was not correlated with the TF. Therefore, we conclude that TPB-extractable K is more reliable than exchangeable K as a basis of fertilizer recommendations for radiocesium-contaminated paddy fields. Phlogopite-treated soils exhibited higher TPB-extractable K concentrations and lower TF values than biotite-treated soils. We thus conclude that phlogopite application is an effective countermeasure to reduce radiocesium uptake in paddy rice.

Decreasing radioactive cesium in lodged buckwheat grain after harvest

Abstract This study assessed soil contamination with high radioactive cesium (R–Cs) concentration in buckwheat grains by lodging, and assessed the possibility of R–Cs reduction in grain through post-harvest preparation. Analysis of buckwheat grain produced in farmers’ fields and reports from farmers indicated that grain from fields that had lodging showed higher R–Cs than grain from fields with no lodging. A field experiment demonstrated that R–Cs in grain after threshing and winnowing (TW) was about six times higher in lodged plants than in nonlodged plants. In lodged plants, R–Cs in grain was decreased to about one-fourth by polishing, and was decreased to about one-seventh by ultrasonic cleaning, compared with R–Cs in grain after TW. These results demonstrate that R–Cs of buckwheat grain of lodged plants can be decreased by removing soil from the grain surface by polishing and winnowing.

Growth and yield properties of near-isogenic wheat lines carrying different photoperiodic response genes

Abstract Near-isogenic lines (NILs), carrying different combinations of Ppd-1 genes in the genetic background of an early-maturity cultivar Abukumawase were grown at two sites for two years to elucidate the effects of photoperiodic response genes on the growth and yield of early-maturity wheat ( Triticum aestivum L.) in central and southwestern Japan. Photoperiod-insensitive genes, Ppd-B1a and Ppd-D1a , accelerated young spike development, and this effect was predominant with Ppd-B1 with no additive effect among them. Ppd-B1a and Ppd-D1a also advanced the jointing stage, heading, and maturity, and the effect of Ppd-B1a on the jointing stage and heading was stronger than that of Ppd-D1a. An additive effect of two genes was detected for heading. Besides, Ppd-B1a and Ppd-D1a reduced culm length and grain weight, although the reduction effect on grain weight was not significant. Meanwhile, the mean temperature from double ridge formation stage to heading was lower in NILs with photoperiod-insensitive genes than in NILs with photoperiod-sensitive gene, and there was a significant correlation between mean temperature from double ridge formation stage to terminal spikelet formation stage and spikelet number per spike as well as between mean temperature from terminal spikelet formation stage to heading and grain number per spikelet. Therefore in a genetic background of extremely early-maturity line of spring type wheat, photoperiod-insensitive genes accelerated wheat growth and reduced spikelet numbers in central and southwestern Japan, and the effect of Ppd-B1a was stronger than that of Ppd-D1a.

Effect of soil exchangeable potassium content on cesium absorption and partitioning in buckwheat grown in a radioactive cesium-contaminated field

Abstract The effect of soil exchangeable (plant-available) potassium (ExK) content on cesium (Cs) absorption and translocation in buckwheat was evaluated in a field contaminated with radioactive Cs (134Cs and 137Cs, RCs) in 2013. The RCs concentration in buckwheat was significantly positively correlated with the naturally occurring stable Cs (133Cs, SCs) concentration, and was lower at higher soil ExK content. The RCs and SCs were actively absorbed by buckwheat until the flowering stage. The soil ExK content was significantly negatively correlated with soil exchangeable RCs and SCs (ExRCs and ExSCs) concentrations. Greater RCs and SCs absorption by buckwheat in soils with low ExK contents was mainly due to higher soil ExRCs and ExSCs concentrations. Reproductive organs showed the largest differences in SCs concentration between low-ExK and high-ExK plots. The root–shoot and shoot–reproductive organs translocations of SCs markedly decreased with increasing soil ExK content. In the root–shoot and shoot–reproductive organs translocations, the discrimination of SCs and K decreased with decreasing soil ExK content. Our main findings were as follows: (1) because RCs are mainly taken up at the earlier growth stage, potassium should be applied as a basal fertilizer to decrease the RCs concentration in buckwheat; (2) lower soil ExK content led to higher soil ExRCs concentrations, resulting in greater RCs absorption by buckwheat; (3) the high Cs absorption and translocation and weaker discrimination between Cs and K in low ExK content soil may be due to the expression of K transporter(s) with weak discrimination between Cs and K.