Kathryn L. Amatangelo

Holocene shifts in the assembly of plant and animal communities implicate human impacts.

Understanding how ecological communities are organized and how they change through time is critical to predicting the effects of climate change. Recent work documenting the co-occurrence structure of modern communities found that most significant species pairs co-occur less frequently than would be expected by chance. However, little is known about how co-occurrence structure changes through time. Here we evaluate changes in plant and animal community organization over geological time by quantifying the co-occurrence structure of 359,896 unique taxon pairs in 80 assemblages spanning the past 300 million years. Co-occurrences of most taxon pairs were statistically random, but a significant fraction were spatially aggregated or segregated. Aggregated pairs dominated from the Carboniferous period (307 million years ago) to the early Holocene epoch (11,700 years before present), when there was a pronounced shift to more segregated pairs, a trend that continues in modern assemblages. The shift began during the Holocene and coincided with increasing human population size and the spread of agriculture in North America. Before the shift, an average of 64% of significant pairs were aggregated; after the shift, the average dropped to 37%. The organization of modern and late Holocene plant and animal assemblages differs fundamentally from that of assemblages over the past 300 million years that predate the large-scale impacts of humans. Our results suggest that the rules governing the assembly of communities have recently been changed by human activity.Understanding how ecological communities are organized and how they change through time is critical to predicting the effects of climate change. Recent work documenting the co-occurrence structure of modern communities found that most significant species pairs co-occur less frequently than would be expected by chance. However, little is known about how co-occurrence structure changes through time. Here we evaluate changes in plant and animal community organization over geological time by quantifying the co-occurrence structure of 359,896 unique taxon pairs in 80 assemblages spanning the past 300 million years. Co-occurrences of most taxon pairs were statistically random, but a significant fraction were spatially aggregated or segregated. Aggregated pairs dominated from the Carboniferous period (307 million years ago) to the early Holocene epoch (11,700 years before present), when there was a pronounced shift to more segregated pairs, a trend that continues in modern assemblages. The shift began during the Holocene and coincided with increasing human population size and the spread of agriculture in North America. Before the shift, an average of 64% of significant pairs were aggregated; after the shift, the average dropped to 37%. The organization of modern and late Holocene plant and animal assemblages differs fundamentally from that of assemblages over the past 300 million years that predate the large-scale impacts of humans. Our results suggest that the rules governing the assembly of communities have recently been changed by human activity.

Quantifying the Human Impacts on Papua New Guinea Reef Fish Communities across Space and Time

Describing the drivers of species loss and of community change are important goals in both conservation and ecology. However, it is difficult to determine whether exploited species decline due to direct effects of harvesting or due to other environmental perturbations brought about by proximity to human populations. Here we quantify differences in species richness of coral reef fish communities along a human population gradient in Papua New Guinea to understand the relative impacts of fishing and environmental perturbation. Using data from published species lists we categorize the reef fishes as either fished or non-fished based on their body size and reports from the published literature. Species diversity for both fished and non-fished groups decreases as the size of the local human population increases, and this relationship is stronger in species that are fished. Additionally, comparison of modern and museum collections show that modern reef communities have proportionally fewer fished species relative to 19th century ones. Together these findings show that the reef fish communities of Papua New Guinea experience multiple anthropogenic stressors and that even at low human population levels targeted species experience population declines across both time and space.

Large, connected floodplain forests prone to flooding best sustain plant diversity

Dams, levees, and water withdrawals disrupt hydrologic regimes and associated floodplain forests. Because these forests are also responding to changes in land use, species invasions, and climate change, the relative effects of these factors are hard to disentangle. Most studies of floodplain forests lack historic data, requiring us to rely on recent data or contemporary spatial relationships to these drivers to infer those causes of vegetation dynamics. Here, we use survey data from the 1950s to reconstruct plant community changes across 40 floodplain forests in Wisconsin. We applied two partial least squares regression (PLS) models to evaluate how current site and landscape scale conditions and changes in these conditions since the 1950s influence contemporary patterns of community diversity and composition. Local site variables were among the most important in explaining current composition metrics and their changes, but historic landscape variables and changes in these were also important. Current local diversity (α) was the highest at sites prone to frequent flooding, even at sites in fragmented landscapes. Sites along sinuous rivers in large watershed areas with more contiguous forest had the highest abundance of wetland indicator plants in the re-survey and had the largest increases in α diversity since the 1950s, despite having the highest presence of exotic species then. These same sites have converged in composition, reflecting increases in wetland indicator plants and common native species. These patterns of increasing α diversity coupled with declines in community distinctiveness are uncommon among long-term studies. Increases in wetland plants may indicate that sites have become wetter with hydrologic changes, but these increases may also reflect improved colonization and establishment processes involving a robust regional pool of generalist wetland taxa. Woody and exotic plants typical of upland forests increased at rarely flooded sites in fragmented and urbanizing landscapes, indicating shifts towards a later-successional conditions and a dampened disturbance regime. This has reduced local species diversity and increased regional distinctness at some sites. As hydrologic connections appear to best maintain native species diversity and composition, even in fragmented landscapes, managers should seek to recreate these whenever feasible.

Community assembly of coral reef fishes along the Melanesian biodiversity gradient

The Indo-Pacific is home to Earth’s most biodiverse coral reefs. Diversity on these reefs decreases from the Coral Triangle east through the islands of Melanesia. Despite this pattern having been identified during the early 20th century, our knowledge about the interaction between pattern and process remains incomplete. To evaluate the structure of coral reef fish communities across Melanesia, we obtained distributional records for 396 reef fish species in five taxa across seven countries. We used hierarchical clustering, nestedness, and multiple linear regression analyses to evaluate the community structure. We also compiled data on life history traits (pelagic larval duration, body size and schooling behavior) to help elucidate the ecological mechanisms behind community structure. Species richness for these taxa along the gradient was significantly related to longitude but not habitat area. Communities are significantly nested, indicating that species-poor communities are largely composed of subsets of the species found on species rich reefs. These trends are robust across taxonomic groups except for the Pomacentridae, which exhibit an anti-nested pattern, perhaps due to a large number of endemic species. Correlations between life history traits and the number of reefs on which species occurred indicate that dispersal and survival ability contribute to determining community structure. We conclude that distance from the Coral Triangle dominates community structure in reef fish; however, conservation of the most species-rich areas will not be sufficient alone to conserve the vivid splendor of this region.