Kibong Kim

Destruction and Detection of Chemical Warfare Agents

1. Scope of Article and Previous Related Reviews 5346 2. Introduction 5346 2.1. Destruction 5347 2.2. Sensing 5347 2.3. Historical Context 5348 2.3.1. Brief History and Molecular Structure 5348 2.4. Related Compounds and Nomenclature 5348 2.4.1. Phosphorus(V) Parent Compounds and Fundamental Chemistry 5348 2.4.2. Pesticides 5349 2.4.3. Simulants 5349 2.4.4. Decomposition Products 5350 2.5. Toxicology 5351 2.5.1. Acetylcholine Esterase (AChE) Inhibition 5351 2.5.2. Endocannabinoid System Activation 5352 2.6. Critical Needs To Decontaminate and Detect 5353 2.7. Treaties and Conventions 5354 3. Stockpile Destruction 5355 3.1. Agent Storage 5355 3.2. Protection Protocols and Logistics 5355 3.3. Background 5355 3.4. Methods Currently Employed 5355 3.4.1. Incineration 5355 3.4.2. Neutralization by Base Hydrolysis 5356 4. Decomposition Reactions 5357 4.1. Hydrolysis 5357 4.2. Autocatalytic Hydrolysis or Hydrolysis Byproducts 5358 4.3. Use of Peroxide 5359 4.4. Oxidation with Bleach and Related Reagents 5360 4.5. Alkoxide as Nucleophile 5360 4.5.1. Basic Media 5360 4.5.2. Metal-Catalyzed Reactions 5361 4.5.3. Metal-Assisted Reactions 5363 4.5.4. Biotechnological Degradation 5363 4.5.5. Cyclodextrin-Assisted Reactions 5370 4.6. Halogen as the Nucleophile 5370 4.6.1. Use of BrOx 5370 4.6.2. Use of Other Halogens 5371 4.6.3. Use of Group 13 Chelates 5371 4.7. Surface Chemistry 5371 4.7.1. Bare Metals and Solid Nanoparticles 5371 4.7.2. Metal Oxides 5371 4.7.3. Representative Elements 5372 4.7.4. d-Block (Groups 4 10) 5373 4.7.5. Solid Metal Oxides of Group 3 and the Lanthanides 5375 4.7.6. Porous Silicon and Related Systems 5375 4.7.7. Zeolites 5375 4.7.8. Comparative IR Data 5375 4.8. Other Types of Systems 5375 5. Decontamination 5376 5.1. Overview: Ability to React with All Types of Agents, Ease of Application, and Compatibility with Treated Objects 5376 6. Agent Fate and Disposal 5378 6.1. Indoor 5378 6.2. Concrete and Construction Surfaces 5378 6.3. Landfills 5379 7. Sensing and Detection 5379 7.1. Possible Metal Ion Binding Modes in Solution 5379 7.1.1. Early Reports of Phosph(on)ate [R3PdO 3 3 3M nþ] Interactions (R= Alkyl, Alkoxyl) 5380 7.1.2. Coordination Chemistry of Downstream Non-P-Containing Products of Decomposition 5380 7.2. Colorimetric Detection 5381 7.3. Chemiluminescence: Fluorescence and Phosphorescence 5382 7.3.1. Lanthanide-Based Catalysts 5382 7.3.2. Organometallic-Based Sensors 5382 7.3.3. Organic Design 5382 7.3.4. Biologically-Based Luminescence Detection 5382 7.3.5. Polymer and Bead Supports 5382 7.4. Porous Silicon 5383 7.5. Carbon Nanotubes 5383

Update 1 of: Destruction and Detection of Chemical Warfare Agents

Yoon Jeong Jang,† Kibong Kim,† Olga G. Tsay,† David A. Atwood,‡ and David G. Churchill*,†,§ †Molecular Logic Gate Laboratory, Department of Chemistry, KAIST, Daejeon, 305-701, Republic of Korea ‡Department of Chemistry, University of Kentucky, Lexington, Kentucky 40506-0055, United States Center for Catalytic Hydrocarbon Functionalizations, Institute for Basic Science (IBS), 373-1 Guseong-dong, Yuseong-gu, Daejeon, 305−701, Republic of Korea

Crystallographic, Photophysical, NMR Spectroscopic and Reactivity Manifestations of the “8-Heteroaryl Effect” in 4,4-Difluoro-8-(C4H3X)-4-bora-3a,4a-diaza-s-indacene (X = O, S, Se) (BODIPY) Systems

We have synthesized and fully characterized three novel, yet closely related, heterocyclically meso-substituted (BODIPY) fluorophores 4,4-difluoro-8-(C(4)H(3)X)-4-bora-3a,4a-diaza-s-indacene (X = O, 2-/3-furyl (7/10); Se, 2-selenenyl (9)) through the use of 2-D NMR (COSY, HSQC, and HMBC), single crystal X-ray diffraction, mass spectrometry, elemental analysis, UV-vis spectroscopy, and fluorescent decay lifetimes, for comparison to the previously reported thienyl species (X = S, 2-/3-thienyl (8/11)). Specifically, 7-11 differ formally by chalcogen (O, S, or Se) or chalcogen placement. Solid state comparisons reveal major effects stemming from subtle structural differences which allows for insights into fluorescent crystal engineering. For the 2-heteroatom substitution, an increase in molecular weight (7 < 8 < 9) correlates with an increasing unit cell-volume, a greater orthogonality for the C(4)H(3)X group, and a lower value for Phi(F). Solution and density functional theory (DFT) results reveal interesting platforms for potential in fluorescent studies for neurology. 2-Heterocyclic species show larger lambda(abs,max/em,max) values relative to 3-heterocyclic ones, based on electron withdrawing effects. 10 has the greatest Phi(F) value herein (0.25, toluene). Fluorescence lifetimes were found to be 2.60 (7), 0.74 (8), 0.27 (9), 4.26 (10), and 1.86 ns (11); lambda(em,max) decay was studied for 8. Heterocyclic differences give rise to somewhat different pyrrolic NMR spectroscopic shifts as well. These compounds resist decomposition as seen from titrations with H(2)O(2), and uniformly undergo lambda(abs,max) red-shifting and lowered Phi(F) values as they become brominated with Br(2).

Dopamine and Cu+/2+ can induce oligomerization of α-synuclein in the absence of oxygen: Two types of oligomerization mechanisms for α-synuclein and related cell toxicity studies.

α‐Synuclein oligomers can induce neurotoxicity and are implicated in Parkinsons disease etiology and disease progression. Many studies have reported α‐synuclein oligomerization by dopamine (DA) and transition metal ions, but few studies provide insight into joint influences of DA and Cu2+. In this study, DA and Cu2+ were coadministered aerobically to measure α‐synuclein oligomerization under these conditions. In the presence of oxygen, DA induced α‐synuclein oligomerization in a dose‐dependent manner. Cu+/2+ did not effect oligomerization in such a manner in the presence of DA. By electrophoresis, Cu2+ was found easily to induce oligomerization with DA. This implies that oligomerization invoked by DA is reversible in the presence of Cu2+, which appears to be mediated by noncovalent bond interactions. In the absence of oxygen, DA induced less oligomerization of α‐synuclein, whereas DA/Cu2+ induced aerobic‐level amounts of oligomers, suggesting that DA/Cu2+ induces oligomerization independent of oxygen concentration. Radical species were detected through electron paramagnetic resonance (EPR) spectroscopic analysis arising from coincubation of DA/Cu2+ with α‐synuclein. Redox reactions induced by DA/Cu2+ were observed in multimer regions of α‐synuclein oligomers through NBT assay. Cellular toxicity results confirm that, for normal and hypoxic conditions, copper or DA/Cu2+ can induce cell death, which may arise from copper redox chemistry. From these results, we propose that DA and DA/Cu2+ induce different mechanisms of α‐synuclein oligomerization, cross‐linking with noncovalent (or reversible covalent) bonding vs. likely radical‐mediated covalent modification.

Interplay of salicylaldehyde, lysine, and M2+ ions on α-synuclein aggregation: cancellation of aggregation effects and determination of salicylaldehyde neurotoxicity.

In this study, α-synuclein was treated in vitro with salicylaldehyde (SA), lysine (lys) and M(n+) (Cu(2+) or Zn(2+)) in various ratios. SA induced aggregation of α-syn in the ratio of 1:500 (α-syn:SA) after incubation (pH 7.4, PBS buffer, 16-24h). Free lys can thus scavenge SA, inhibiting the aggregation of α-syn up to ∼63% (α-syn:SA:lys=1:1000:5000). When Cu(2+) and Zn(2+) are added to SA and α-syn, protein aggregation is induced. In the case of Zn(2+), the aggregation of α-syn increased to 74% (ratio=1:1000:50). Fluorescence studies support the production of protein-bound Zn(2+)-salicylaldimine species. For Cu(2+), aggregation of α-syn was shown (138%). Thus, possible protective or inducing effects of lys, Cu(2+) and Zn(2+) may exist with α-syn. α-Syn, SA and Cu(2+) can undergo complexation (fluorescence, CD and MALDI data). Cellular toxicity of SA (700μM), Zn(2+) (700μM) and Cu(2+) (700μM) on SH-SY5Y (1×10(5) cells) showed 9.8%, 38.0% and 14.4% compared to control values. Combinations showed more severe toxicities: 71.9% and 93.1% for SA (70μM)+Cu(2+) (700μM) and SA (70μM)+Zn(2+) (700μM), respectively, suggesting complexation itself may be toxic.

Meso-thienyl and furyl rotor effects in BF2-chelated dipyrrin dyes: solution spectroscopic studies and X-ray structural packing analysis of isomer and congener effects

Well-defined discrete fluorescent molecular systems with very subtle steric/electronic differences are interesting when considering solid-state packing and solution substituent effects. Herein, we report the synthesis and characterization of four 4,4-difluoro-1,3,5,7-tetramethyl-8-(C4H3 X)-4-bora-3a,4a-diaza-s-indacene complexes (X = O, S). Various NMR spectroscopic experiments were used to assign all relevant atoms (CD2Cl2): 19F, 11B, 1H, 13C, 13C–H undecoupled, 1H–1H COSY, 1H–1H NOESY, 1H–13C HSQC, and 1H–13C HMBC NMR spectroscopy. UV-Vis and fluorescence studies were undertaken for all compounds. Chemical shift differences were found between isomers and congeners; for congeners, aromatic δ differences were attributed to electron-poor character. Also, compounds 1–4 were studied crystallographically. In the solid state, internal dihedral planes and intermolecular packing patterns can be compared.

Metal ion roles and responses in the CNS under toxic organophosphonate exposure: traces of understanding and various open questions

In this short review article, we list fresh questions regarding how metal ions are operating (or differently operating) in CNS compartments in the presence of concentrations of toxic organophosphonates (Nerve agents) [O = PR1R2R3]. Clearly, AChE active site serine residue phosphonylation is of primary and acute concern, but there may be a trigger for later onset (long ranging effects) events that may be acute and symptomatic but noncritical. Based on a biological inorganic chemistry approach, we have tried to position important questions herein starting from what is known in the primary literature, namely about zinc, iron, calcium, and magnesium ions.