Kirsten Thompson

The world’s rarest whale

Summary The vast expanses of the South Pacific Ocean have, until recently, concealed the identity of the worlds rarest whale, the spade-toothed beaked whale ( Mesoplodon traversii ). Based on the scarcity of records and the total absence of previous sightings, this species is the least known species of whale and one of the worlds rarest living mammals. Two individuals of this species, previously known from only two skull fragments and a mandible, were recently discovered beach-cast in New Zealand. Although initially misidentified, we have used DNA analysis to reveal their true identity. We provide the first morphological description and images of this enigmatic species. This study highlights the importance of DNA typing and reference collections for the identification of rare species.

Bucking the trend: genetic analysis reveals high diversity, large population size and low differentiation in a deep ocean cetacean

Understanding the genetic structure of a population is essential to its conservation and management. We report the level of genetic diversity and determine the population structure of a cryptic deep ocean cetacean, the Gray’s beaked whale (Mesoplodon grayi). We analysed 530 bp of mitochondrial control region and 12 microsatellite loci from 94 individuals stranded around New Zealand and Australia. The samples cover a large area of the species distribution (~6000 km) and were collected over a 22-year period. We show high genetic diversity (h=0.933–0.987, π=0.763–0.996% and Rs=4.22–4.37, He=0.624–0.675), and, in contrast to other cetaceans, we found a complete lack of genetic structure in both maternally and biparentally inherited markers. The oceanic habitats around New Zealand are diverse with extremely deep waters, seamounts and submarine canyons that are suitable for Gray’s beaked whales and their prey. We propose that the abundance of this rich habitat has promoted genetic homogeneity in this species. Furthermore, it has been suggested that the lack of beaked whale sightings is the result of their low abundance, but this is in contrast to our estimates of female effective population size based on mitochondrial data. In conclusion, the high diversity and lack of genetic structure can be explained by a historically large population size, in combination with no known exploitation, few apparent behavioural barriers and abundant habitat.

An Overview of Seabed Mining Including the Current State of Development, Environmental Impacts, and Knowledge Gaps

Rising demand for minerals and metals, including for use in the technology sector, has led to a resurgence of interest in exploration of mineral resources located on the seabed. Such resources, whether seafloor massive (polymetallic) sulfides around hydrothermal vents, cobalt-rich crusts on the flanks of seamounts or fields of manganese (polymetallic) nodules on the abyssal plains, cannot be considered in isolation of the distinctive, in some cases unique, assemblages of marine species associated with the same habitats and structures. In addition to mineral deposits, there is interest in extracting methane from gas hydrates on continental slopes and rises. Many of the regions identified for future seabed mining are already recognised as vulnerable marine ecosystems. Since its inception in 1982, the International Seabed Authority (ISA), charged with regulating human activities on the deep-sea floor beyond the continental shelf, has issued 27 contracts for mineral exploration, encompassing a combined area of more than 1.4 million km2, and continues to develop rules for commercial mining. At the same time, some seabed mining operations are already taking place within continental shelf areas of nation states, generally at relatively shallow depths, and with others at advanced stages of planning. The first commercial enterprise, expected to target mineral-rich sulfides in deeper waters, at depths between 1,500 and 2,000 metres on the continental shelf of Papua New Guinea, is scheduled to begin early in 2019. In this review, we explore three broad aspects relating to the exploration and exploitation of seabed mineral resources: (1) the current state of development of such activities in areas both within and beyond national jurisdictions, (2) possible environmental impacts both close to and more distant from mining activities and (3) the uncertainties and gaps in scientific knowledge and understanding which render baseline and impact assessments particularly difficult for the deep sea. We also consider whether there are alternative approaches to the management of existing mineral reserves and resources, which may reduce incentives for seabed mining.

High coverage of the complete mitochondrial genome of the rare Gray’s beaked whale (Mesoplodon grayi) using Illumina next generation sequencing

Abstract Using an Illumina platform, we shot-gun sequenced the complete mitochondrial genome of Gray’s beaked whale (Mesoplodon grayi) to an average coverage of 152X. We performed a de novo assembly using SOAPdenovo2 and determined the total mitogenome length to be 16,347 bp. The nucleotide composition was asymmetric (33.3% A, 24.6% C, 12.6% G, 29.5% T) with an overall GC content of 37.2%. The gene organization was similar to that of other cetaceans with 13 protein-coding genes, 2 rRNAs (12S and 16S), 22 predicted tRNAs and 1 control region or D-loop. We found no evidence of heteroplasmy or nuclear copies of mitochondrial DNA in this individual. Beaked whales within the genus Mesoplodon are rarely seen at sea and their basic biology is poorly understood. These data will contribute to resolving the phylogeography and population ecology of this speciose group.

Genetic Kinship Analyses Reveal That Gray’s Beaked Whales Strand in Unrelated Groups

Some marine mammals are so rarely seen that their life history and social structure remain a mystery. Around New Zealand, Grays beaked whales (Mesoplodon grayi) are almost never seen alive, yet they are a commonly stranded species. Grays are unique among the beaked whales in that they frequently strand in groups, providing an opportunity to investigate their social organization. We examined group composition and genetic kinship in 113 Grays beaked whales with samples collected over a 20-year period. Fifty-six individuals stranded in 19 groups (2 or more individuals), and 57 whales stranded individually. Mitochondrial control region haplotypes and microsatellite genotypes (16 loci) were obtained for 103 whales. We estimated pairwise relatedness between all pairs of individuals and average relatedness within, and between, groups. We identified 6 mother-calf pairs and 2 half-siblings, including 2 whales in different strandings 17 years and 1500 km apart. Surprisingly, none of the adults stranding together were related suggesting that groups are not formed through the retention of kin. These data suggest that both sexes may disperse from their mothers, and groups consisting of unrelated subadults are common. We also found no instances of paternity within the groups. Our results provide the first insights into dispersal, social organization, and the mating system in this rarely sighted species. Why whales strand is still unknown but, in Grays beaked whales, the dead can tell us much about the living.