Kiyotaka Hidaka

A metagenetic approach for revealing community structure of marine planktonic copepods

Marine planktonic copepods are an ecologically important group with high species richness and abundance. Here, we propose a new metagenetic approach for revealing the community structure of marine planktonic copepods using 454 pyrosequencing of nuclear large subunit ribosomal DNA. We determined an appropriate similarity threshold for clustering pyrosequencing data into molecular operational taxonomic units (MOTUs) using an artificial community containing 33 morphologically identified species. The 99% similarity threshold had high species‐level resolution for MOTU clustering but overestimated species richness. The artificial community was appropriately clustered into MOTUs at 97% similarity, with little inflation in MOTU numbers and with relatively high species‐level resolution. The number of sequence reads of each MOTU was correlated with dry weight of that taxon, suggesting that sequence reads could be used as a proxy for biomass. Next, we applied the method to field‐collected samples, and the results corresponded reasonably well with morphological analysis of these communities. Numbers of MOTUs were well correlated with species richness at 97% similarity, and large numbers of sequence reads were generally observed in MOTUs derived from species with large biomass. Further, MOTUs were successfully classified into taxonomic groups at the family level at 97% similarity; similar patterns of species richness and biomass were revealed within families with metagenetic and morphological analyses. At the 99% similarity threshold, MOTUs with high proportions of sequence reads were identified as biomass‐dominant species in each field‐collected sample. The metagenetic approach reported here can be an effective tool for rapid and comprehensive assessment of copepod community structure.

Southwest intrusion of 134Cs and 137Cs derived from the Fukushima Dai-ichi nuclear power plant accident in the Western North Pacific.

Enormous quantities of radionuclides were released into the ocean via both atmospheric deposition and direct release as a result of the Fukushima Dai-ichi Nuclear Power Plant (FNPP) accident. This study discusses the southward dispersion of FNPP-derived radioactive cesium (Cs) in subsurface waters. The southernmost point where we found the FNPP-derived (134)Cs (1.5-6.8 Bq m(-3)) was 18 °N, 135 °E, in September 2012. The potential density at the subsurface peaks of (134)Cs (100-500 m) and the increased water column inventories of (137)Cs between 0 and 500 m after the winter of 2011-2012 suggested that the main water mass containing FNPP-derived radioactive Cs was the North Pacific Subtropical Mode Water (NPSTMW), formed as a result of winter convection. We estimated the amount of (134)Cs in core waters of the western part of the NPSTMW to be 0.99 PBq (decay-corrected on 11 March 2011). This accounts for 9.0% of the (134)Cs released from the FNPP, with our estimation revealing that a considerable amount of FNPP-derived radioactive Cs has been transported to the subtropical region by the formation and circulation of the mode water.

Biomass, Abundance, and Vertical Distribution of Micronekton and Large Gelatinous Zooplankton in the Subarctic Pacific and the Bering Sea during the Summer of 1997

The biomass, abundance, and vertical distribution of micronekton, including enidarians, mysids, euphausiids, decapods, thaliaceans, and fishes, were studied on the basis of samples collected with an 8-m2 opening-closing rectangular midwater trawl (RMT-8, mesh size: 4.5 mm) at three stations in the subarctic Pacific (the western subarctic gyre, the central Subarctic, and the Gulf of Alaska) and one station in the oceanic Bering Sea. The total biomass in the 0–1000 m water column ranged from 2.9 to 5.1 gDW m−2. Except for primary consumers that showed highly variable biomass (thaliaceans and euphausiids), biomass was highest in the oceanic Bering Sea followed by the central (boundary between eastern and western gyres), western gyre, and eastern Gulf of Alaska. The biomass compositions by higher taxa were basically similar between regions: fishes were most dominant, followed by enidarians at all stations, except for the marked predominance of thaliaceans in the Gulf of Alaska. High biomasses of gelatinous animals (31% of overall dry weight), occasionally comparable to those of fishes and crustaceans, suggest their potential importance in the subarctic Pacific. Characteristics in vertical patterns of micronekton biomass common in all stations were: (1) a mesopelagic peak around 500–600 m both day and night, (2) a layer of low biomass in the cold intermediate water and/or in the upper mesopelagic zone, (3) a nighttime shift of biomass to upper layers, and (4) an highly variable biomass of epipelagic/interzonal migrants (euphausiids and thaliaceans).

Water Column Profiles of Dissolved Inorganic Radiocarbon for the Kuroshio Region, Offshore of the Southern Japanese Coast

We present the water column profiles (surface to 2000 m depth) for dissolved inorganic radiocarbon (14CDIC) from 2 stations in the Kuroshio region including the Kuroshio large meander (LM) of 2004–2005. Surprisingly, the Δ 14CDIC value varied up to 125‰ in the intermediate layer, especially near 600 m depth. In addition, the Δ 14CDIC value was approximately –150‰ at 200 m depth at the northern station of Kuroshio in August 2005. This value is ~100‰ less than other Δ 14CDIC values for the same depth. In comparison, the Δ 14CDIC water column profiles for the southern station of Kuroshio and GEOSECS station 224 decrease down to 600 m depth and were similar below 600 m depth. Our results suggest that strong upwelling associated with the Kuroshio LM has a powerful influence on the Δ 14CDIC water column profiles in the study region.

Evaluation of metagenetic community analysis of planktonic copepods using Illumina MiSeq: Comparisons with morphological classification and metagenetic analysis using Roche 454

Metagenetics is a rapid and taxonomically comprehensive method for revealing community structures within environmental samples, based on large amounts of sequence data produced by high-throughput sequencers. Because community structures of planktonic copepods are important in the ocean owing to their high diversity and abundance, a metagenetic analysis of the 28S D2 region using Roche 454 was previously developed. However, the Illumina MiSeq platform with a high sequence output is being used more frequently in metagenetics, and non-calanoid copepods have not previously been fully evaluated. Here, we evaluated an Illumina MiSeq-based metagenetic analysis using a mock community and field-collected samples that were examined in a previous study using Roche 454, and the community structure, including non-calanoid copepods, was compared among morphological and metagenetic analyses. We removed a singleton read and applied an appropriate abundance threshold to remove erroneous Molecular Operational Taxonomic Units (MOTUs) with low-abundance sequences in the MiSeq-based analysis. Results showed that the copepod community was successfully characterized using Illumina MiSeq. Higher-quality sequences were obtained using MiSeq than by Roche 454, which reduced the overestimation of diversity, especially at a strict 99% similarity threshold for MOTU clustering. Taxonomic compositions in terms of both biomass and presence/absence of species, including non-calanoids, were more appropriately represented in the MiSeq- than in Roche 454-based analysis. Our data showed that metagenetic analysis using Illumina MiSeq is more useful for revealing copepod communities than Roche 454, owing to the lower cost and higher quality.