Lawrence G. Oates

Nitrous oxide emissions during establishment of eight alternative cellulosic bioenergy cropping systems in the North Central United States

Greenhouse gas (GHG) emissions from soils are a key sustainability metric of cropping systems. During crop establishment, disruptive land‐use change is known to be a critical, but under reported period, for determining GHG emissions. We measured soil N2O emissions and potential environmental drivers of these fluxes from a three‐year establishment‐phase bioenergy cropping systems experiment replicated in southcentral Wisconsin (ARL) and southwestern Michigan (KBS). Cropping systems treatments were annual monocultures (continuous corn, corn–soybean–canola rotation), perennial monocultures (switchgrass, miscanthus, and poplar), and perennial polycultures (native grass mixture, early successional community, and restored prairie) all grown using best management practices specific to the system. Cumulative three‐year N2O emissions from annuals were 142% higher than from perennials, with fertilized perennials 190% higher than unfertilized perennials. Emissions ranged from 3.1 to 19.1 kg N2O‐N ha−1 yr−1 for the annuals with continuous corn > corn–soybean–canola rotation and 1.1 to 6.3 kg N2O‐N ha−1 yr−1 for perennials. Nitrous oxide peak fluxes typically were associated with precipitation events that closely followed fertilization. Bayesian modeling of N2O fluxes based on measured environmental factors explained 33% of variability across all systems. Models trained on single systems performed well in most monocultures (e.g., R2 = 0.52 for poplar) but notably worse in polycultures (e.g., R2 = 0.17 for early successional, R2 = 0.06 for restored prairie), indicating that simulation models that include N2O emissions should be parameterized specific to particular plant communities. Our results indicate that perennial bioenergy crops in their establishment phase emit less N2O than annual crops, especially when not fertilized. These findings should be considered further alongside yield and other metrics contributing to important ecosystem services.

Spring-water Nitrate Increased with Removal of Livestock Grazing in a California Oak Savanna

We characterized spatial and temporal changes in nitrate concentrations of the leachate from annual grasslands and subsequently emergent spring-waters and tested the effect of livestock grazing removal on them. Nitrate patterns indicated that annual grassland soils are a likely N source to spring-fed wetlands, which appear to intercept and transform N along its hydrologic path from upland soils to spring-fed, headwater streams. Aboveground biomass and soil N extractions suggested that removal of livestock grazing from these wetlands impaired this function by allowing dead plant material to accumulate inhibiting plant production (hence, plant N demand), resulting in elevated stream-water nitrate (NO3−) concentrations. Nitrous oxide (N2O) fluxes indicated that grazing removal may increase the relative importance of this N-loss pathway. Microbial biomass varied with season but was not affected by grazing treatments suggesting that N2O losses were related to differences in NO3− availability rather than grazing effects on microbial community composition or their activity. Spring-fed wetlands provide important ecosystem services such as plant uptake and denitrification at transition zones between terrestrial and aquatic ecosystems. These N-retention and transformation functions may be enhanced through biomass harvesting by livestock.

Measurement of Greenhouse Gas Flux from Agricultural Soils Using Static Chambers

Measurement of greenhouse gas (GHG) fluxes between the soil and the atmosphere, in both managed and unmanaged ecosystems, is critical to understanding the biogeochemical drivers of climate change and to the development and evaluation of GHG mitigation strategies based on modulation of landscape management practices. The static chamber-based method described here is based on trapping gases emitted from the soil surface within a chamber and collecting samples from the chamber headspace at regular intervals for analysis by gas chromatography. Change in gas concentration over time is used to calculate flux. This method can be utilized to measure landscape-based flux of carbon dioxide, nitrous oxide, and methane, and to estimate differences between treatments or explore system dynamics over seasons or years. Infrastructure requirements are modest, but a comprehensive experimental design is essential. This method is easily deployed in the field, conforms to established guidelines, and produces data suitable to large-scale GHG emissions studies.

Nitrogen Fertilization Effects on Productivity and Nitrogen Loss in Three Grass-Based Perennial Bioenergy Cropping Systems

Nitrogen (N) fertilization can greatly improve plant productivity but needs to be carefully managed to avoid harmful environmental impacts. Nutrient management guidelines aimed at reducing harmful forms of N loss such as nitrous oxide (N2O) emissions and nitrate (NO3-) leaching have been tailored for many cropping systems. The developing bioenergy industry is likely to make use of novel cropping systems, such as polycultures of perennial species, for which we have limited nutrient management experience. We studied how a switchgrass (Panicum virgatum) monoculture, a 5-species native grass mixture and an 18-species restored prairie responded to annual fertilizer applications of 56 kg N ha-1 in a field-scale agronomic trial in south-central Wisconsin over a 2-year period. We observed greater fertilizer-induced N2O emissions and sub-rooting zone NO3- concentrations in the switchgrass monoculture than in either polyculture. Fertilization increased aboveground net primary productivity in the polycultures, but not in the switchgrass monoculture. Switchgrass was generally more productive, while the two polycultures did not differ from each other in productivity or N loss. Our results highlight differences between polycultures and a switchgrass monoculture in responding to N fertilization.

Controlling microbial contamination during hydrolysis of AFEX-pretreated corn stover and switchgrass: effects on hydrolysate composition, microbial response and fermentation.

BackgroundMicrobial conversion of lignocellulosic feedstocks into biofuels remains an attractive means to produce sustainable energy. It is essential to produce lignocellulosic hydrolysates in a consistent manner in order to study microbial performance in different feedstock hydrolysates. Because of the potential to introduce microbial contamination from the untreated biomass or at various points during the process, it can be difficult to control sterility during hydrolysate production. In this study, we compared hydrolysates produced from AFEX-pretreated corn stover and switchgrass using two different methods to control contamination: either by autoclaving the pretreated feedstocks prior to enzymatic hydrolysis, or by introducing antibiotics during the hydrolysis of non-autoclaved feedstocks. We then performed extensive chemical analysis, chemical genomics, and comparative fermentations to evaluate any differences between these two different methods used for producing corn stover and switchgrass hydrolysates.ResultsAutoclaving the pretreated feedstocks could eliminate the contamination for a variety of feedstocks, whereas the antibiotic gentamicin was unable to control contamination consistently during hydrolysis. Compared to the addition of gentamicin, autoclaving of biomass before hydrolysis had a minimal effect on mineral concentrations, and showed no significant effect on the two major sugars (glucose and xylose) found in these hydrolysates. However, autoclaving elevated the concentration of some furanic and phenolic compounds. Chemical genomics analyses using Saccharomyces cerevisiae strains indicated a high correlation between the AFEX-pretreated hydrolysates produced using these two methods within the same feedstock, indicating minimal differences between the autoclaving and antibiotic methods. Comparative fermentations with S. cerevisiae and Zymomonas mobilis also showed that autoclaving the AFEX-pretreated feedstocks had no significant effects on microbial performance in these hydrolysates.ConclusionsOur results showed that autoclaving the pretreated feedstocks offered advantages over the addition of antibiotics for hydrolysate production. The autoclaving method produced a more consistent quality of hydrolysate, and also showed negligible effects on microbial performance. Although the levels of some of the lignocellulose degradation inhibitors were elevated by autoclaving the feedstocks prior to enzymatic hydrolysis, no significant effects on cell growth, sugar utilization, or ethanol production were seen during bacterial or yeast fermentations in hydrolysates produced using the two different methods.

Livestock Management Strategy Affects Net Ecosystem Carbon Balance of Subhumid Pasture

Abstract Temperate grasslands are generally considered carbon (C) sinks, but climate and management likely affect whether they accumulate or lose C on an annual time step. The North Central Region of the United States contains highly productive improved pasture that is used exclusively for livestock grazing and mechanical harvest. The objective of this study was to use a net ecosystem carbon balance (NECB) approach to estimate C accumulation or loss in subhumid pastures under four typical livestock management practices: management-intensive rotational grazing (MIRG), continuous grazing (CONT), haymaking (HARV), and land set aside with no harvests (NONE). MIRG lost significantly less C in 2006 than all other treatments, and in 2007 MIRG was the only treatment that had a positive NECB. For 2006, our model resulted in an average change of −236 ± 15 (CONT), −100 ± 24 (MIRG), −391 ± 11 (HARV), and −276 ± 28 (NONE) g C · m−2 · y−1. For 2007, the change was −234 ± 56 (CONT), 106 ± 69 (MIRG), −200 ± 25 (HARV), and −171 ± 38 (NONE) g C · m−2 · y−1. Increased C fixed as net primary production (NPP) and C imported as hay and grain resulted in the MIRG treatment having the most favorable C balance. Even with imported hay and grain, reduced NPP in the CONT treatment led to a less favorable C balance. In the HARV treatment, high biomass removal drove the negative C balance, while the relationship between reduced NPP and heterotrophic respiration alone drove the negative C balance in the NONE treatment. Climate change mitigation services provided from ecosystem C accumulation relative to cultivation may be warranted for pastures, but when all cross-boundary transfers of C are not considered, significant misconceptions can occur regarding how different management strategies affect the NECB of subhumid pasture.

Grazing removal decreases the magnitude of methane and the variability of nitrous oxide emissions from spring-fed wetlands of a California oak savanna

Spring-fed wetlands are embedded within Californian oak savannas whose understory is dominated by annual grasslands that are grazed by livestock. Because there is mounting pressure to remove livestock from riparian areas in the western U.S., we excluded livestock from one-half of three spring-fed wetlands and monitored greenhouse gas (CH4 and N2O) fluxes in 2000 and 2002. In 2003, we also measured several ecosystem characteristics to help understand treatment differences in gas fluxes. Bootstrapped estimates of mean CH4 and N2O fluxes over the study period showed that these wetlands were sources of CH4 and N2O to the atmosphere; we compare the magnitude of these fluxes to estimates from other wetland studies. Grazing removal decreased the magnitude of CH4 emissions and their variability during our study period. A regression tree analysis showed lower soil temperature and higher soil water content to be the best predictors of lower CH4 emissions, both of which were observed under grazing removal. The magnitude of N2O emissions was not influenced by grazing removal, but fluxes from ungrazed plots were less variable. Grazing exclusion during hot summer months in California should reduce CH4 emissions from spring-fed wetlands, but have little effect on the magnitude of N2O loss to the atmosphere. Implications of climate change for these processes are discussed.

Perennialization and Cover Cropping Mitigate Soil Carbon Loss from Residue Harvesting

While the US Midwest is expected to serve as a primary feedstock source for cellulosic biofuel production, the impacts of residue harvesting on soil organic carbon (SOC) may greatly limit sustainable production capacity. However, viable feedstock production could be realized through adoption of management practices and cropping systems that offset residue-harvest-induced SOC losses. Sequestration of SOC can be enhanced by increasing the duration of crop soil cover through cover or double cropping or cultivation of dedicated perennials. However, assessing the efficacy of such options across sites and over long periods is experimentally challenging. Hence, we use the Environmental Productivity Integrated Climate (EPIC) model to provide such an assessment. Model-data integration was used to calibrate and evaluate model suitability, which exhibited reasonable effectiveness through of 0.97 and 0.63 for SOC stock and yield, respectively. Long-term simulations indicate considerable capacity for offsetting SOC loss. Incorporating rye ( L.) into continuous corn ( L.) and corn-soybean [ (L.) Merr.] systems offset the SOC losses induced by harvesting 21.2 and 38.3% of available stover, respectively. Similarly, converting 20.4% of corn-soybean land to miscanthus ( × J.M. Greef & Deuter ex Hodkinson & Renvoize) or 27.5% of land to switchgrass ( L.) offset the SOC impacts of harvesting 60% of stover from the remaining corn-soybean lands. These responses indicate that adoption of such measures would sizably affect the life cycle consequences of residue-derived biofuels and expand estimates of sustainable cellulosic feedstock production capacity from the US Midwest.

Does Plant Biomass Manipulation in Static Chambers Affect Nitrous Oxide Emissions from Soils

One of the most widespread approaches for measurement of greenhouse gas emissions from soils involves the use of static chambers. This method is relatively inexpensive, is easily replicated, and is ideally suited to plot-based experimental systems. Among its limitations is the loss of detection sensitivity with increasing chamber height, which creates challenges for deployment in systems including tall vegetation. It is not always possible to avoid inclusion of plants within chambers or to extend chamber height to fully accommodate plant growth. Thus, in many systems, such as perennial forages and biomass crops, plants growing within static chambers must either be trimmed or folded during lid closure. Currently, data on how different types of biomass manipulation affect measured results is limited. Here, we compare the effects of cutting vs. folding of biomass on nitrous oxide measurements in switchgrass ( L.) and alfalfa ( L.) systems. We report only limited evidence of treatment effects during discrete sampling events and little basis for concern that effects may intensify over time as biomass manipulation is repeatedly imposed. However, nonsignificant treatment effects that were consistently present amounted to significant overall trends in three out of the four systems studied. Such minor disparities in flux could amount to considerable quantities over time, suggesting that caution should be exercised when comparing cumulative emission values from studies using different biomass manipulation strategies.

A Lipid Extraction and Analysis Method for Characterizing Soil Microbes in Experiments with Many Samples

Microbial communities are important drivers and regulators of ecosystem processes. To understand how management of ecosystems may affect microbial communities, a relatively precise but effort-intensive technique to assay microbial community composition is phospholipid fatty acid (PLFA) analysis. PLFA was developed to analyze phospholipid biomarkers, which can be used as indicators of microbial biomass and the composition of broad functional groups of fungi and bacteria. It has commonly been used to compare soils under alternative plant communities, ecology, and management regimes. The PLFA method has been shown to be sensitive to detecting shifts in microbial community composition. An alternative method, fatty acid methyl ester extraction and analysis (MIDI-FA) was developed for rapid extraction of total lipids, without separation of the phospholipid fraction, from pure cultures as a microbial identification technique. This method is rapid but is less suited for soil samples because it lacks an initial step separating soil particles and begins instead with a saponification reaction that likely produces artifacts from the background organic matter in the soil. This article describes a method that increases throughput while balancing effort and accuracy for extraction of lipids from the cell membranes of microorganisms for use in characterizing both total lipids and the relative abundance of indicator lipids to determine soil microbial community structure in studies with many samples. The method combines the accuracy achieved through PLFA profiling by extracting and concentrating soil lipids as a first step, and a reduction in effort by saponifying the organic material extracted and processing with the MIDI-FA method as a second step.