Linda C. Schaffner

An estuarine benthic index of biotic integrity (B-IBI) for Chesapeake Bay

A multimetric benthic index of biotic integrity (B-IBI) was developed using data from five Chesapeake Bay sampling programs conducted between 1972 and 1991. Attributes of the index were selected by comparing the response of 17 candidate measures of benthic condition (metrics) between a set of minimally affected reference sites and at all other sites for which data were available. This procedure was conducted independently for each of seven habitats defined by salinity and substrate. Fifteen of the 17 candidate metrics differed significantly between reference sites and other sites for at least one habitat. No metric differed significantly in all seven habitats; however, four metrics, species diversity, abundance, biomass, and percent of abundance as pollution-indicative taxa, differed in six habitats. The index was calculated by scoring each selected metric as 5, 3, or 1 depending on whether its value at a site approximated, deviated slightly from, or deviated greatly from conditions at the best reference sites. Validation based on independent data collected between 1992 and 1994 indicated that the index correctly distinguished stressed sites from reference sites 93% of the time, with the highest validation rates occurring in high salinity habitats.

Hypoxia-induced structural changes in the diet of bottom-feeding fish and Crustacea

Interactive effects of three alternating normoxia-hypoxia cycles on benthic prey exploitation by mobile fish (spot, Leiostomus xanthurus; and hogchoker, Trinectes maculatus) and a burrowing crustacean (Squilla empusa) were investigated in the York River, Chesapeake Bay, Virginia, USA, in 1989. Predators collected in four depth strata (A: 5 to 10 m; B: 10 to 14 m; C: 14 to 20 m; D:>20 m) variously affected by hypoxia were separated into size classes (three for spot and two each for hogchoker and mantis shrimp) to examine potential ontogenetic influences in prey selection. The most severe effects of hypoxia on the benthos occurred in the two deepest strata (C and D) and decreased in shallower strata (B>A), with Stratum A never affected by low oxygen. Predators investigated exhibited dietary evidence of optimal prey exploitation during or immediately after hypoxic events. In most instances gut contents contained significantly larger, deeper-burrowing prey during periods of low oxygen than during alternating peroids of normal oxygen levels. Spot consumed a greater biomass (45 to 73%) of polychaetes than other prey, with crustaceans initially also constituting a main dietary component but decreasing in importance later in the study period. The deep-burrowing anemone, Edwardsia elegans, was an important prey species for spot, particularly in the lower depth strata affected by hypoxia. Prey consumed by 10-to 15-cm-long spot increased significantly in size during some hypoxic events, suggesting a sublethal effect of hypoxia on large benthic species. Polychaetes (primarily Glycera americana, Notomastis latericeus and Loimia medusa) were dominant dietary components in hogchoker, making up between 85 and 98% of the diet. Bivalve siphons became important prey for hogchoker in the three deepest strata and were only consumed after the August hypoxia. Stomach contents of mantis shrimp were difficult to identify in most instances due to the near complete mastication of consumed prey. Crustaceans were important prey initially but became less conspicuous in the diet subsequent to the July hypoxia event, when hydroids became more dominant. Overall, predator species exhibited optimal exploitation of moribund or slowly recovering benthos affected by hypoxia. The sublethal effects of hypoxia through increased availability of benthos to resident predators can have important consequences for energy flow in areas such as the York River which experience periodic low-oxygen cycles.

Effects of periodic hypoxia on mortality, feeding and predation in an estuarine epifaunal community.

The York River Estuary, a tributary of the Chesapeake Bay, USA, experiences periodic low oxygen stress (hypoxia), yet epifaunal species form dense communities there. We studied hypoxia tolerance of common epifaunal species in the York River by exposing sessile and mobile epifauna to high and low oxygen concentrations in laboratory aquaria. Mortality in hypoxia varied among species, ranging from 0% to 100%, with trends of decreased tolerance by mobile species relative to sessile species. While most species tested experienced some mortality after being exposed to hypoxia (at 1 mg O(2)/l or 0.5 mg O(2)/l) for 5 days, many species had a median lethal time (LT(50)) in hypoxia greater than 1 week (3 of 6 species at 1 mg O(2)/l and 6 of 14 species at 0.5 mg O(2)/l), the maximum duration of typical hypoxic episodes in the York River, suggesting that hypoxia may cause little mortality for some species in this system. However, hypoxia had sub-lethal effects on behavior in all species tested. Epifaunal animals responded to hypoxia with behaviors that moved them higher in the water column or by entering resting states until hypoxia passed. Feeding and predation by a variety of taxa (the hydroid Obelia bicuspidata, the mud crab Neopanope sayi, juvenile blue crabs Callinectes sapidus, the flatworm Stylochus ellipticus, and the nudibranch Doridella leucolena) decreased during hypoxia, despite varying mortality responses to low oxygen stress, suggesting that short hypoxic episodes may create predation refuges for prey species. At least one highly tolerant species (O. bicuspidata) showed substantially decreased growth in hypoxia. Although relatively high tolerance of hypoxia by many estuarine epifaunal species limits serious disturbance during brief hypoxic episodes, hypoxias greatest impact on York River epifaunal communities might be through its indirect effects on behavior and predation.

Continuous monitoring of dissolved oxygen in an estuary experiencing periodic hypoxia and the effect of hypoxia on macrobenthos and fish

ABSTRACT Hypoxic bottom water (defined as * ) is now a common occurrence in many estuarine and coastal systems. If prolonged and widespread, hypoxia could present a serious threat to the ecological balance of these systems. In areas where hypoxia is intermittent and not prolonged, its effect on macrobenthic behavior and energetics may facilitate transfer of energy to oxygen-tolerant bottom-feeding fish. This study examined changes in the behavior and populations of benthic fish and invertebrates that were associated with periodic hypoxia in the York River, Chesapeake Bay, USA. In the York River tidally driven neap–spring cycles of water column stratification–destratification, associated with the lunar cycle, are the primary factors regulating levels of bottom water dissolved oxygen during the summer. Automated continuous environmental data recording (every 20 min) was instrumental in understanding the response of the system to oxygen stress and allowed for timing of data collection at known times within a normoxic–hypoxic cycle. Data indicated that while macrobenthic community structure was insensitive to brief periods of hypoxia, behavior, growth, and production were affected. Demersal feeding fish changed their feeding habits quickly to take advantage of stressed macrobenthos that came to the sediment surface. The apparent color redox-potential discontinuity layer in the sediment slowly became shallower as summer progressed.

Assessing coastal benthic macrofauna community condition using best professional judgement - Developing consensus across North America and Europe

Benthic indices are typically developed independently by habitat, making their incorporation into large geographic scale assessments potentially problematic because of scaling inequities. A potential solution is to establish common scaling using expert best professional judgment (BPJ). To test if experts from different geographies agree on condition assessment, sixteen experts from four regions in USA and Europe were provided species-abundance data for twelve sites per region. They ranked samples from best to worst condition and classified samples into four condition (quality) categories. Site rankings were highly correlated among experts, regardless of whether they were assessing samples from their home region. There was also good agreement on condition category, though agreement was better for samples at extremes of the disturbance gradient. The absence of regional bias suggests that expert judgment is a viable means for establishing a uniform scale to calibrate indices consistently across geographic regions.

BIOLOGICAL MEDIATION OF BOTTOM BOUNDARY LAYER PROCESSES AND SEDIMENT SUSPENSION IN THE LOWER CHESAPEAKE BAY

Abstract In relatively low-energy estuarine environments where bottom skin friction shear stresses do not appreciably exceed the critical shear stress required for sediment transport, benthic biology can profoundly affect the responsiveness of the bed to benthic flows. The bottom boundary layer processes that suspend and transport fine sediments at two sites in the lower Chesapeake Bay, eastern USA were examined in an interdisciplinary study that embraced all seasons. Instrumented boundary layer tetrapods were used to record time varying bed stress and suspended sediment concentrations. Box cores, surface and profile photographs and direct observations provided data on benthic biology. An annular seabed flume was used to obtain in situ estimates of the threshold shear stresses at which sediments were resuspended. Observed bed stresses related to semi-diurnal tidal currents were in the range of 0.10 to 0.14 Pa at the lower-energy site but often exceeded 0.20 Pa at the more energetic site. These stresses were often enhanced by wind stress and waves. Biological effects dominated bed roughness and influenced the susceptibility of bottom sediments to physical entrainment. Wave- or tide-generated bed forms rarely were observed at either site. Epifaunal organisms increased the relief amplitude of the sediment-water interface by more than 8 cm. Temporal and spatial variability in the abundance and species composition of epifauna was high at both sites, making the effects of these organisms on hydraulic roughness difficult to predict. Application of the seabed flume showed that the critical stress at which sediment was suspended varied from 0.10 to 0.14 Pa. This variability is attributed to seasonal and interannual variability in biological activity: the lowest critical stress values coincided with the most intense bioturbation. The floor of the bay stem appears to approximate a quasi-equilibrium surface with normally recurrent physical bed stresses remaining near or slightly below threshold values. The bed remains active because benthic biota mix the sediment column, provide bed relief, and mediate the responsiveness of the bed to physical processes.

The Concept of an Equilibrium Surface Applied to Particle Sources and Contaminant Distributions in Estuarine Sediments

Studies have shown that many chemically-reactive contaminants become associated with fine particles in coastal waters and that the rate, patterns, and extent of contaminant accumulation within estuarine systems are extremely variable. In this paper, we briefly review our findings concerning the accumulation patterns of contaminants in several estuarine systems along the eastern coastline of the United States, and have applied a well-established concept in geology, that is “an equilibrium profile,” to explain the observed large variations in these patterns. We show that fine-particle deposition is the most important factor affecting contaminant accumulation in estuarine areas, and that accumulation patterns are governed by physical processes acting to establish or maintain a sediment surface in dynamic equilibrium with respect to sea level, river discharge, tidal currents, and wave activity. Net long-term particle and particle-associated contaminant accumulations are negliglible in areas where the sediment surface has attained “dynamic equilibrium” with the hydraulic regime. Contaminant, accumulation in these areas primarily occurs by the exchange of contaminant-poor sedimentary particles with contaminant-rich suspended particles during physical or biological mixing of the surface sediment. Virtually the entire estuarine particulate and contaminant load bypasses these “equilibrium” areas to accumulate at extremely rapid in relatively small areas that are temporally out of equilibriums as a result of natural processes or human activities. These relatively small areas serve as major sinks for particles from riverine and marine sources, and for biogenic carbon formed in situ within estuaries or on the inner shelf.

Spatial variability of bottom types in the lower Chesapeake Bay and adjoining estuaries and inner shelf

Abstract The spatial distributions of the bed textural and morphologic properties that influence boundary-layer roughness characteristics in the lower Chesapeake Bay, the lower portions of the York, James and Elizabeth Rivers, and the adjacent inner continental shelf were systematically mapped. A high resolution, fully-corrected side-scan sonar mapping system (100 kHz) was used for remote acoustic detection of bottom roughness, supported by ‘ground-truthing’ by direct in situ observations by divers. These complementary methods proved to be especially effective in detecting a wide range of roughness-controlling bed surface properties at various scales. Fine-scale variations in sediment size and associated bottom texture are considered to be the main source of heterogeneity in Nikuradse (skin friction) roughness. A wide variety of small- and intermediate-scale morphologic elements provide meso-scale and small-scale distributed (form drag) roughness. Depending upon location, the distributed roughness may be either biogenic or hydrodynamically induced (by currents and waves), although anthropogenic roughness prevails in certain instances (e.g. port areas). In terms of particular combinations of roughness scales and types, combined sonar and diver observation data allow the beds to be systematically but qualitatively classified into 10 bottom types, each of which is associated with a particular type of subenvironment.

Effects of hopper dredging and sediment dispersion, chesapeake bay

Hopper dredging operations release suspended sediment into the environment by agitation of the bed and by discharge of overflow slurries. Monitoring of turbidity and suspended sediment concentrations in central Chesapeake Bay revealed two plumes: (1) an upper plume produced by overflow discharge and (2) a near-bottom plume produced by draghead agitation and rapid settling from the upper plume. The upper plume dispersed over 5.7 km2 extending 5,200 meters form the discharge point. Redeposited sediment accumulated on channel flanks covering an area of 6.4 km2 and reached a thickness of 19 cm. Altogether dredging redistributed into the environment an estimated 100,000 tons of sediment or 12 percent of the total material removed.Near-field concentrations of suspended sediment, less than 300 m from the dredge, reach 840 to 7,200 mg/L or 50 to 400 times the normal background level. Far-field concentrations (>300 m) are enriched 5 to 8 times background concentrations and persist 34 to 50 percent of the time during a dredging cycle (1.5 to 2.0 h). The overflow discharge plume evolves through three dispersion phases: (1) convective descent, (2) dynamic collapse, and (3) long-term passive diffusion (Clark and others 1971). The bulk of the material descends rapidly to the bottom during the convective descent phase, whereas the cloud that remains in suspension is dispersed partly by internal waves. Although suspended sediment concentrations in the water column exceed certain water quality standards, benthic communities survived the perturbation with little effect.

Ephemeral deposition, seabed mixing and fine-scale strata formation in the York River estuary, Chesapeake Bay

Abstract A process-oriented sedimentary facies model is developed for the York River estuary, a sub-estuary of the lower Chesapeake Bay. This facies model was based on 210Pb and grain-size profiles, as well as X-radiographs taken from kasten cores and box cores collected in a series of across-river transects. Throughout most of the energetic microtidal York River, the seabed is characterized by physical mixing to depths of 25–200 cm. A strong cross-estuary gradient in processes is observed with one side, including channel, flank and shoal, dominated by frequent deep erosion and redeposition (physical mixing), while physical mixing is reduced on the other side, resulting in a greater preservation of biological mixing signatures. Within the physically dominated side of the river, the mixed layer is characterized by ‘stair-stepped’ 210Pb profiles with one or more segments (∼25–200 cm thick) of nearly uniform excess activity. X-radiographs reveal that, although a record of limited biogenic sediment modification is preserved, sedimentary structures within the mixed layer are dominated by centimeter to decimeter scale units of finely to coarsely laminated strata bounded by hiatal surfaces. This demonstrates that mixing results primarily from erosion, resuspension and deposition. Reduced salinity limits the number of benthic species in the York River. Physical disturbance leads to an impoverishment of this community, which is composed primarily of small, opportunistic species with a paucity of larger macrofauna. As a result, mixing in the biologically dominated side of the river is generally on the order of a few centimeters, but may be as deep as 40 cm, and 210Pb geochronology yields low biodiffusion rates (0.43–3.35 cm2 yr−1). X-radiographs reveal the presence of some laminations which suggest that although the mixing is controlled by biological processes the mixing intensity is relatively low. Based on 210Pb geochronologies, residence time estimates for particles within the mixed layer are on the order of centuries. Residence time calculations based on the sediment mass in the physically mixed layer is equivalent to 70 yr of river sediment yield, consistent with century-scale residence times from core data. The frequency and intensity of seabed mixing appears to differ between the lower and upper river. The lower York River is wider and deeper, and is more susceptible to large storms and sea surges, which we suspect drives much of the recorded seabed mixing. Within the upper river, longer-term events (storms) may cause the deepest mixing, but much of this record is destroyed by shorter-term, high-frequency events which produce shallow to mid-depth (