Linda Hellborg

Cattle domestication in the Near East was followed by hybridization with aurochs bulls in Europe

Domesticated cattle were one of the cornerstones of European Neolithisation and are thought to have been introduced to Europe from areas of aurochs domestication in the Near East. This is consistent with mitochondrial DNA (mtDNA) data, where a clear separation exists between modern European cattle and ancient specimens of British aurochsen. However, we show that Y chromosome haplotypes of north European cattle breeds are more similar to haplotypes from ancient specimens of European aurochsen, than to contemporary cattle breeds from southern Europe and the Near East. There is a sharp north–south gradient across Europe among modern cattle breeds in the frequencies of two distinct Y chromosome haplotypes; the northern haplotype is found in 20 out of 21 European aurochsen or early domestic cattle dated 9500–1000 BC. This indicates that local hybridization with male aurochsen has left a paternal imprint on the genetic composition of modern central and north European breeds. Surreptitious mating between aurochs bulls and domestic cows may have been hard to avoid, or may have occurred intentionally to improve the breeding stock. Rather than originating from a few geographical areas only, as indicated by mtDNA, our data suggest that the origin of domestic cattle may be far more complex than previously thought.

Limited number of patrilines in horse domestication

Genetic studies using mitochondrial DNA (mtDNA) have identified extensive matrilinear diversity among domestic horses. Here, we show that this high degree of polymorphism is not matched by a corresponding patrilinear diversity of the male-specific Y chromosome. In fact, a screening for single-nucleotide polymorphisms (SNPs) in 14.3 kb of noncoding Y chromosome sequence among 52 male horses of 15 different breeds did not identify a single segregation site. These observations are consistent with a strong sex-bias in the domestication process, with few stallions contributing genetically to the domestic horse.

Y Chromosome Conserved Anchored Tagged Sequences (YCATS) for the Analysis of Mammalian Male-specific DNA.

Y chromosome haplotyping based on microsatellites or single nucleotide polymorphisms has recently proven to be a powerful approach for evolutionary studies of human populations, and also holds great promise for the studies of wild species. However, the use of the approach is hampered in most natural populations by the lack of Y chromosome markers and sequence information. Here, we report the large‐scale development of Y chromosome conserved anchor tagged sequence (YCATS) markers in mammals by a polymerase chain reaction screening approach. Exonic primers flanking 48 different introns of Y‐linked genes were developed based on human and mouse sequences, and screened on a set of 20 different mammals. On average about 10 introns were amplified for each species and a total of 100 kb of Y chromosome sequence were obtained. Intron size in humans was a reasonable predictor of intron size in other mammals (r2 = 0.45) and there was a negative correlation between human fragment size and amplification success. We discuss a number of factors affecting the possibility of developing conserved Y chromosome markers, including fast evolution of Y chromosome sequences due to male‐biased mutation and adaptive evolution of male‐specific genes, dynamic evolution of the Y chromosome due to being a nonrecombining unit, and homology with X chromosome sequences.

Cryptic population structure in a large, mobile mammalian predator: the Scandinavian lynx

The Eurasian lynx (Lynx lynx) is an example of a species that has gone through a severe bottleneck, leading to near extinction in Scandinavia around 1930 — a pattern shared with several other large carnivorous mammals. Here we extend previous genetic analyses of northern European lynx, confirming that lynx from the Scandinavian Peninsula represent a distinct clade differing clearly from European conspecifics. Furthermore, and despite a recent bottleneck and subsequent range expansion, we detect marked genetic differentiation within Scandinavia. This differentiation is largely manifested as a north–south gradient, with a linear increase in the quantity FST/(1 − FST). Aided by computer simulations we find that this pattern is unlikely to have arisen by random genetic drift in the short time since lynx started to expand in the 1950s, suggesting that the spatial structure may predate the bottleneck. Individual‐based analyses indicate that, instead of a continuous gradient, Scandinavian lynx may be structured into three more or less distinct groups, possibly corresponding to northern, central and southern subpopulations. The presence of such structuring was unknown previously and was unexpected from general considerations on the mobility of the species, historical data and the absence of geographical barriers. Our study demonstrates how molecular markers may be used to detect cryptic population structure, invisible using traditional methods.

Differentiation and levels of genetic variation in northern European lynx (Lynx lynx) populations revealed by microsatellites and mitochondrial DNA analysis

The European lynx (Lynx lynx) hasexperienced significant decline in populationnumbers over large parts of its formerdistribution area in central and northernEurope. In Scandinavia (Sweden and Norway), thespecies has been subject to intense hunting and inthe early 20th century the population size mayhave been as low as about 100 animals. Duringthe rest of the century there have beenalternating periods of restricted hunting andtotal protection. Future management of theScandinavian lynx population will requireinsight into what effects demographicbottlenecks may have had on genetic variabilityand structure. For this purpose, 276 lynxesfrom Sweden, Norway, Finland, Estonia andLatvia were analysed for polymorphism at 11feline microsatellite loci and at themitochondrial DNA (mtDNA) control region.Scandinavian lynxes were found to be fixed fora single mtDNA haplotype, while this and threeadditional haplotypes were seen in Finland andthe Baltic States (Estonia and Latvia); thehaplotypes were all very similar, onlydiffering at 1–4 sites within a 700 bp regionsequenced. Microsatellite variability wasmoderate (He = 0.51–0.62) with lowerheterozygosity and fewer alleles in Scandinaviathan in Finland and the Baltic States together,though significant so only for the latter.Heterozygosity data in Scandinavia wereconsistent with a recent population bottleneck.Various analyses (e.g. Fst, individual-basedtree, assignment test) revealed distinctgenetic differentiation between Scandinavianlynxes and animals from Finland and the BalticStates. Some structure was evident withinScandinavia as well, suggesting an isolation bydistance. The observed partition of geneticvariability between Scandinavia and the easterncountries thereof indicates that lynxpopulations from the two regions may need to beseparately managed. We discuss what factors canhave contributed to the population geneticstructure seen in northern European lynxpopulations of today.

Analysis of sex-linked sequences supports a new mammal species in Europe

European mammals have been the focus of particularly detailed taxonomic studies by traditional morphological methods. However, DNA analyses have the potential to reveal additional, cryptic species. We describe two highly divergent evolutionary lineages within a small Eurasian mammal, the field vole (Microtus agrestis). We show that the two lineages can be detected not only with maternally (mitochondrial DNA), but also with paternally (Y chromosome) and biparentally (X chromosome) inherited DNA sequences. Reciprocal monophyly of all genealogies and their congruent geographical distributions is consistent with reproductive isolation. Our results suggest that the field vole should be reclassified as two separate species.

A near-extinction event in lynx: Do microsatellite data tell the tale?

Fluctuations in population size can have a profound impact on effective population size and the maintenance of genetic variation within a population. A number of tests based on microsatellite data have been developed for the detection of bottleneck events in a populations past. In this paper, we search for signs of a bottleneck in microsatellite data on the Scandinavian lynx (Lynx lynx) population. This population was hunted to the brink of extinction, with fewer than 100 animals (one estimate was as low as 30 individuals) remaining in the late 1920s. Protection allowed recovery of the population, which currently numbers about 2000 adults. Despite this pronounced demographic bottleneck (more than 95% of the population was killed), we could find no conclusive genetic evidence of a bottleneck using four of the recently developed tests for detecting such events.

Genetic evaluation of an otter translocation program

The translocation of individuals from onepopulation to another is a common technique inwildlife conservation. However, the outcome oftranslocation programs is not always properlyevaluated and the relative contribution ofreleased individuals to the resident populationoften remains unknown. We used mitochondrialDNA and autosomal genetic markers to evaluatethe success of a translocation program ofEurasian otters (Lutra lutra) in Sweden.The program is regarded as successful becauseof subsequent population growths. Norwegianotters used for the restocking program could begenetically differentiated from Swedish otters.The releases took place at two sites. In anarea south of the first site, where 47 otterswere released, no genetic contribution of theintroduced animals to the population could beobserved and the genetic diversity was lowerthan before the releases. At the second site,the release of seven otters led to a change ingenetic composition of the resident population.The results of this study suggest that thegrowth of the otter population after therestocking may not be as dependent on thereleases as initially suspected. The geneticeffects of the translocations appear to berestricted to areas in the immediate vicinityof the release sites.

Sex ratio of leopards taken in trophy hunting: genetic data from Tanzania

The sex ratio of leopards, Panthera pardus, taken by trophyhunters in Tanzania is examined. We used sex specific molecularmarkers to analyze 77 samples collected from animals shot betweenthe years 1995–1998 and found that 28.6% were females, despitethe fact that only males are allowed on licenses and all skinswere tagged as males. The model used for quota setting assumesthat only males are shot, but the effect of this violation ofquotas is unknown. Off-take in Tanzania does not currently fillquotas, but when off-take approach maximum levels, compliancewith set quotas and regulations will be critical for sustainableharvest.