M Altunbas
University of Texas MD Anderson Cancer Center
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Featured researches published by M Altunbas.
Medical Physics | 2007
Chao Jen Lai; Chris C. Shaw; L Chen; M Altunbas; Xinming Liu; T Han; T Wang; Wei Yang; Gary J. Whitman; Shu Ju Tu
Mammography is the only technique currently used for detecting microcalcification (MC) clusters, an early indicator of breast cancer. However, mammographic images superimpose a three-dimensional compressed breast image onto two-dimensional projection views, resulting in overlapped anatomical breast structures that may obscure the detection and visualization of MCs. One possible solution to this problem is the use of cone beam computed tomography (CBCT) with a flat-panel (FP) digital detector. Although feasibility studies of CBCT techniques for breast imaging have yielded promising results, they have not shown how radiation dose and x-ray tube voltage affect the accuracy with which MCs are detected by CBCT experimentally. We therefore conducted a phantom study using a FP-based CBCT system with various mean glandular doses and kVp values. An experimental CBCT scanner was constructed with a data acquisition rate of 7.5 frames/s. 10.5 and 14.5 cm diameter breast phantoms made of gelatin were used to simulate uncompressed breasts consisting of 100% glandular tissue. Eight different MC sizes of calcium carbonate grains, ranging from 180-200 microm to 355-425 microm, were used to simulate MCs. MCs of the same size were arranged to form a 5 x 5 MC cluster and embedded in the breast phantoms. These MC clusters were positioned at 2.8 cm away from the center of the breast phantoms. The phantoms were imaged at 60, 80, and 100 kVp. With a single scan (360 degrees), 300 projection images were acquired with 0.5 x, 1x, and 2x mean glandular dose limit for 10.5 cm phantom and with 1x, 2x, and 4x for 14.5 cm phantom. A Feldkamp algorithm with a pure ramp filter was used for image reconstruction. The normalized noise level was calculated for each x-ray tube voltage and dose level. The image quality of the CBCT images was evaluated by counting the number of visible MCs for each MC cluster for various conditions. The average percentage of the visible MCs was computed and plotted as a function of the MGD, the kVp, and the average MC size. The results showed that the MC visibility increased with the MGD significantly but decreased with the breast size. The results also showed that the x-ray tube voltage affects the detection of MCs under different circumstances. With a 50% threshold, the minimum detectable MC sizes for the 10.5 cm phantom were 348(+/-2), 288(+/-7), 257(+/-2) microm at 3, 6, and 12 mGy, respectively. Those for the 14.5 cm phantom were 355 (+/-1), 307 (+/-7), 275 (+/-5) microm at 6, 12, and 24 mGy, respectively. With a 75% threshold, the minimum detectable MC sizes for the 10.5 cm phantom were 367 (+/-1), 316 (+/-7), 265 (+/-3) microm at 3, 6, and 12 mGy, respectively. Those for the 14.5 cm phantom were 377 (+/-3), 334 (+/-5), 300 (+/-2) microm at 6, 12, and 24 mGy, respectively.
Medical Physics | 2007
M Altunbas; Chris C. Shaw; L Chen; C Lai; Xinming Liu; T Han; T Wang
In cone beam breast computed tomography (CT), scattered radiation leads to nonuniform biasing of CT numbers known as a cupping artifact. Besides being visual distractions, cupping artifacts appear as background nonuniformities, which impair efficient gray scale windowing and pose a problem in threshold based volume visualization/segmentation. To overcome this problem, we have developed a background nonuniformity correction method specifically designed for cone beam breast CT. With this technique, the cupping artifact is modeled as an additive background signal profile in the reconstructed breast images. Due to the largely circularly symmetric shape of a typical breast, the additive background signal profile was also assumed to be circularly symmetric. The radial variation of the background signals was estimated by measuring the spatial variation of adipose tissue signals in front view breast images. To extract adipose tissue signals in an automated manner, a signal sampling scheme in polar coordinates and a background trend fitting algorithm were implemented. The background fits compared with targeted adipose tissue signal value (constant throughout the breast volume) to get an additive correction value for each tissue voxel. To test the accuracy, we applied the technique to cone beam CT images of mastectomy specimens. After correction, the images demonstrated significantly improved signal uniformity in both front and side view slices. The reduction of both intraslice and interslice variations in adipose tissue CT numbers supported our observations.
Medical Physics | 2008
L Chen; Chris C. Shaw; M Altunbas; Chao Jen Lai; Xinming Liu; T Han; T Wang; Wei T. Yang; Gary J. Whitman
This work is to demonstrate that high quality cone beam CT images can be generated for a volume of interest (VOI) and to investigate the exposure reduction effect, dose saving, and scatter reduction with the VOI scanning technique. The VOI scanning technique involves inserting a filtering mask between the x-ray source and the breast during image acquisition. The mask has an opening to allow full x-ray exposure to be delivered to a preselected VOI and a lower, filtered exposure to the region outside the VOI. To investigate the effects of increased noise due to reduced exposure outside the VOI on the reconstructed VOI image, we directly extracted the projection data inside the VOI from the full-field projection data and added additional data to the projection outside the VOI to simulate the relative noise increase due to reduced exposure. The nonuniform reference images were simulated in an identical manner to normalize the projection images and measure the x-ray attenuation factor for the object. Regular Feldkamp-Davis-Kress filtered backprojection algorithm was used to reconstruct the 3D images. The noise level inside the VOI was evaluated and compared with that of the full-field higher exposure image. Calcifications phantom and low contrast phantom were imaged. Dose reduction was investigated by estimating the dose distribution in a cylindrical water phantom using Monte Carlo simulation based Geant4 package. Scatter reduction at the detector input was also studied. Our results show that with the exposure level reduced by the VOI mask, the dose levels were significantly reduced both inside and outside the VOI without compromising the accuracy of image reconstruction, allowing for the VOI to be imaged with more clarity and helping to reduce the breast dose. The contrast-to-noise ratio inside the VOI was improved. The VOI images were not adversely affected by noisier projection data outside the VOI. Scatter intensities at the detector input were also shown to decrease significantly both inside and outside the VOI in the projection images, indicating potential improvement of image quality inside the VOI and contribution to dose reduction both inside and outside the VOI.
Medical Physics | 2008
L Chen; Chris C. Shaw; M Altunbas; Chao Jen Lai; Xinming Liu
This work is intended to investigate the spatial resolution properties in cone beam CT by estimating the point spread functions (PSFs) in the reconstructed 3D images through simulation. The point objects were modeled as 3D delta functions. Their projections onto the detector plane were analytically derived and blurred with 2D PSFs estimated and used to represent the detector and focal spot blurring effects. The 2D PSF for detector blurring was computed from the line spread function measured for a typical a-Si/CsI flat panel detector used for general radiography. The focal spot blurring effect was simulated for an x-ray source with a nominal focal spot size of 0.6 mm and 1.33 x magnification at the rotating center. Projection images were computed and sampled with an interval significantly smaller than the detector pixel size to avoid aliasing. Images were reconstructed using the Feldkamp algorithm with the five different filter functions. Reconstructed PSFs were plotted and analyzed to investigate the effects of detector blurring alone, focal spot blurring alone, or a combination of the two on the PSFs and their variations with the radial distance and z-level. Effects of binning and reconstruction filters were also studied. Our results show that the PSFs due to detector blurring are largely symmetric and vary little with the locations of the point objects. With focal spot blurring only or added to detector blurring, the PSFs along the rotation axis were largely symmetric but became increasingly asymmetric as the point objects were moved away from the rotation axis. The PSFs were found to become wider in the axial (anode to cathode) direction as the objects were moved toward the cathode side. The 3D PSFs may be approximated by an ellipsoid with three different axial lengths. They were found to point upright along the rotating axis but tilt toward the rotating axis as the point object was moved away from the axis.
Proceedings of SPIE--the International Society for Optical Engineering | 2006
Xinming Liu; Chris C. Shaw; T Wang; L Chen; M Altunbas; S. Cheenu Kappadath
We developed and investigated a scanning sampled measurement (SSM) technique for scatter measurement and correction in cone beam breast CT imaging. A cylindrical polypropylene phantom (water equivalent) was mounted on a rotating table in a stationary gantry experimental cone beam breast CT imaging system. A 2-D array of lead beads, with the beads set apart about ~1 cm from each other and slightly tilted vertically, was placed between the object and x-ray source. A series of projection images were acquired as the phantom is rotated 1 degree per projection view and the lead beads array shifted vertically from one projection view to the next. A series of lead bars were also placed at the phantom edge to produce better scatter estimation across the phantom edges. Image signals in the lead beads/bars shadow were used to obtain sampled scatter measurements which were then interpolated to form an estimated scatter distribution across the projection images. The image data behind the lead bead/bar shadows were restored by interpolating image data from two adjacent projection views to form beam-block free projection images. The estimated scatter distribution was then subtracted from the corresponding restored projection image to obtain the scatter removed projection images. Our preliminary experiment has demonstrated that it is feasible to implement SSM technique for scatter estimation and correction for cone beam breast CT imaging. Scatter correction was successfully performed on all projection images using scatter distribution interpolated from SSM and restored projection image data. The resultant scatter corrected projection image data resulted in elevated CT number and largely reduced the cupping effects.
Progress in Biomedical Optics and Imaging - Proceedings of SPIE | 2005
L Chen; Chris C. Shaw; S Tu; M Altunbas; T Wang; C Lai; Xinming Liu; S. Cheeenu Kappadath
This paper investigates the feasibility of using a flat panel based cone-beam computer tomography (CT) system for 3-D breast imaging with computer simulation and imaging experiments. In our simulation study, 3-D phantoms were analytically modeled to simulate a breast loosely compressed into cylindrical shape with embedded soft tissue masses and calcifications. Attenuation coefficients were estimated to represent various types of breast tissue, soft tissue masses and calcifications to generate realistic image signal and contrast. Projection images were computed to incorporate x-ray attenuation, geometric magnification, x-ray detection, detector blurring, image pixelization and digitization. Based on the two-views mammography comparable dose level on the central axis of the phantom (also the rotation axis), x-ray kVp/filtration, transmittance through the phantom, detected quantum efficiency (DQE), exposure level, and imaging geometry, the photon fluence was estimated and used to estimate the phantom noise level on a pixel-by-pixel basis. This estimated noise level was then used with the random number generator to produce and add a fluctuation component to the noiseless transmitted image signal. The noise carrying projection images were then convolved with a Gaussian-like kernel, computed from measured 1-D line spread function (LSF) to simulated detector blurring. Additional 2-D Gaussian-like kernel is designed to suppress the noise fluctuation that inherently originates from projection images so that the reconstructed image detectability of low contrast masses phantom can be improved. Image reconstruction was performed using the Feldkamp algorithm. All simulations were performed on a 24 PC (2.4 GHz Dual-Xeon CPU) cluster with MPI parallel programming. With 600 mrads mean glandular dose (MGD) at the phantom center, soft tissue masses as small as 1 mm in diameter can be detected in a 10 cm diameter 50% glandular 50% adipose or fatter breast tissue, and 2 mm or larger masses are visible in a 100% glandular 0% adipose breast tissue. We also found that the 0.15 mm calcification can be detected for 100μm detector while only 0.2 μm or above are visible for 200 μm detector. Our simulation study has shown that the cone-beam CT breast imaging can provide reasonable good quality and detectability at a dose level similar to that of two views\mammography. For imaging experiments, a stationary x-ray source and detector, a step motor driven rotating phantom system was constructed to demonstrate cone beam breast CT image. A breast specimen from mastectomy and animal tissue embedded with calcifications were imaged. The resulting images show that 355-425 μm calcifications were visible in images obtained at 77 kVp with a voxel size of 316 μm and a center dose of 600 mrads. 300-315 μm calcifications were visible in images obtained at 60 kVp with a voxel size of 158 μm and a center dose of 3.6 rads.
IEEE Transactions on Medical Imaging | 2006
Xinming Liu; Chris C. Shaw; M Altunbas; T Wang
This paper describes and demonstrates an electronic collimation method, referred to as the alternate line erasure and readout (ALER) technique, for implementing slot-scan digital radiography technique with an amorphous silicon (a-Si) thin-film transistor (TFT) array based flat-panel detector. An amorphus selenium (a-Se) flat-panel detector was modified to implement the ALER technique for slot-scan imaging. A stepping-motor driven fore-collimator was mounted in front of an X-ray tube to generate a scanning X-ray fan beam. The scanning speed and magnification were adjusted to synchronize the fan beam motion with the image line readout rate. The image lines on the leading and trailing edges of the fan beam were tracked and alternately reset and read out, respectively. The former operation resulted in the erasure of the scatter signals accumulated in the leading edge image line prior to the arrival of the fan beam. The latter operation resulted in the acquisition of fan beam exposure data integrated in the trailing edge image line right after the fan beam passed. To demonstrate the scatter rejection capability of this technique, an anthropomorphic chest phantom was placed in PA position and scanned at a speed of 576 lines (8.0 cm)/s at 117 kVp and 32 mA. A tungsten bar is placed at the entrance side of the chest phantom to measure the scatter-to-primary ratio (SPR), scatter reduction factor (SRF), and contrast-to-noise ratio degradation factor (CNRDF) in the slot-scan images to evaluate the effectiveness of scatter rejection and the resultant improvement of image quality. SPR and CNRDF in the open-field images were also measured and used as the reference for comparison. A scatter reduction by 86.4 to 95.4% across lower lung and heart regions has been observed with slot-scan imaging. The CNRs have been found to be improved by a factor of 2 in the mediastinum areas over the open-field image as well.
Medical Physics | 2008
Xinming Liu; Chris C. Shaw; Chao Jen Lai; M Altunbas; L Chen; T Han; T Wang
Anti-scatter grids have been widely used to reject scatter and increase the perceptibility of low-contrast object in chest radiography; however they also attenuate the primary x-rays, resulting in a substantial degradation of primary information. Compensation for this degradation requires the use of higher exposure technique hence higher dose to the patient. A more efficient approach to reject scatter is the slot-scan imaging technique which employs a narrow scanning x-ray fan beam in conjunction with a slit or slot shaped solid state detector or an area detector used with an aft-collimator. With this approach, scatter can be rejected effectively without the need to attenuate primary x-rays. This paper demonstrates an electronic aft-collimation method, referred to as the alternate line erasure and readout (ALER) technique, for implementing the slot-scan digital radiography with a modern flat-panel detector. With this technique, instead of first exposing the detector and then reading the image line by line, the image line on the leading edge of the scanning fan beam is reset to erase the scatter accumulated prior to the arrival of the fan beam x-rays, while the image line on the trailing edge of the scanning fan beam is read out to acquire the image signals following the fan-beam exposure. These reset and readout processes are alternated and repeated as the x-ray fan beam scans across the detector. An anthropomorphic chest phantom was imaged to evaluate the scatter rejection ability and the low-contrast performance for the ALER technique and compare them with those for the anti-scatter grid method in full-field chest imaging. With a projected beam width of 16 mm, the slot-scan/ALER technique resulted in an average reduction of the scatter-to-primary ratios by 81%, 84%, 82%, and 86% versus 65%, 73%, 74%, and 73% with the anti-scatter grid method in the lungs, mediastinum, retrocardium, and subdiaphragm, respectively. The average CNR for the slot-scan/ALER technique was found to improve by 135%, 133%, 176%, and 87% versus 15%, 15%, 38%, and -11% with the anti-scatter grid method in the mediastinum, retrocardium, subdiaphragm, and lungs, respectively. These results demonstrated that the slot-scan/ALER technique can be used to achieve equally effective scatter rejection but substantially higher low-contrast performance than the anti-scatter grid method.
Medical Physics | 2005
Xinming Liu; Chris C. Shaw; M Altunbas; T Wang
Purpose: To implement and investigate a scanning sampled measurement (SSM) technique used to obtain sampled scatter measurement for scatter correction in cone beam breast CT. Method and Materials: Breast phantom or specimen is mounted on the rotating stage in a stationary gantry experimental cone beam CT system. A slightly tilted 2-D array of 1.2-mm diameter lead beads, with the beads 1 cm apart from each other, was placed between the object and x-ray source. A series of projection images were acquired as the phantom is rotated (1 degree per projection view) and the lead beads array shifted by 1.2-mm from one projection view to the next. Image signals in the lead bead shadow were used to obtain sampled scatter measurements which are then interpolated to form an estimated scatter distribution. The image data in the lead bead shadows are restored by interpolating image data from the two adjacent projection views to form complete (lead bead free) projection images. The estimated scatter distribution is then subtracted from the corresponding restored projection image to obtain the scatter corrected projection images. Results: Sampled scatter measurements were successfully made in each projection image and the accuracy of scatter measurements was verified with a larger beam blocker placed between the lead beads and x-ray source. The SPRs in the projection images of a breast phantom are found to range from 0.1 to 0.5. Using scatter distribution interpolated from scanning sampled measurements and restored projection image data, scatter correction was successfully performed on all projection images. The resulting scatter corrected projection image data resulted in more accurate reconstruction of the linear attenuation coefficients and reduced the cupping effects. This work is supported in part by a research grant EB000117 from the NIBIB & Bioengineering and a research grant CA104759 from the NCI.
Proceedings of SPIE--the International Society for Optical Engineering | 2006
Y Meng; Chris C. Shaw; Xinming Liu; M Altunbas; T Wang; L Chen; Shu Ju Tu; S. Cheenu Kappadath; Chao Jen Lai
Purpose: To compare two detector systems - one based on the charge-coupled device (CCD) and image amplifier, the other based on a-Si/CsI flat panel, for cone beam computed-tomography (CT) imaging of small animals. A high resolution, high framing rate detector system for the cone beam CT imaging of small animals was developed. The system consists of a 2048×3072×12 bit CCD optically coupled to an image amplifier and an x-ray phosphor screen. The CCD has an intrinsic pixel size of 12 μm but the effective pixel size can be adjusted through the magnification adjustment of the optical coupling systems. The system is used in conjunction with an x-ray source and a rotating stage for holding and rotating the scanned object in the cone beam CT imaging experiments. The advantages of the system include but are not limited to the ability to adjust the effective pixel size and to achieve extremely high spatial resolution and temporal resolution. However, the need to use optical coupling compromises the detective quanta efficiency (DQE) of the system. In this paper, the imaging characteristics of the system were presented and compared with those of an a- Si/CsI flat-panel detector system.