M. Muthu Rama Krishnan

Atherosclerotic Risk Stratification Strategy for Carotid Arteries Using Texture-Based Features

Plaques in the carotid artery result in stenosis, which is one of the main causes for stroke. Patients have to be carefully selected for stenosis treatments as they carry some risk. Since patients with symptomatic plaques have greater risk for strokes, an objective classification technique that classifies the plaques into symptomatic and asymptomatic classes is needed. We present a computer aided diagnostic (CAD) based ultrasound characterization methodology (a class of Atheromatic systems) that classifies the patient into symptomatic and asymptomatic classes using two kinds of datasets: (1) plaque regions in ultrasound carotids segmented semi-automatically and (2) far wall gray-scale intima-media thickness (IMT) regions along the common carotid artery segmented automatically. For both kinds of datasets, the protocol consists of estimating texture-based features in frameworks of local binary patterns (LBP) and Laws texture energy (LTE) and applying these features for obtaining the training parameters, which are then used for classification. Our database consists of 150 asymptomatic and 196 symptomatic plaque regions and 342 IMT wall regions. When using the Atheromatic-based system on semiautomatically determined plaque regions, support vector machine (SVM) classifier was adapted with highest accuracy of 83%. The accuracy registered was 89.5% on the far wall gray-scale IMT regions when using SVM, K-nearest neighbor (KNN) or radial basis probabilistic neural network (RBPNN) classifiers. LBP/LTE-based techniques on both kinds of carotid datasets are noninvasive, fast, objective and cost-effective for plaque characterization and, hence, will add more value to the existing carotid plaque diagnostics protocol. We have also proposed an index for each type of datasets: AtheromaticPi, for carotid plaque region, and AtheromaticWi, for IMT carotid wall region, based on the combination of the respective significant features. These indices show a separation between symptomatic and asymptomatic by 4.53 units and 4.42 units, respectively, thereby supporting the texture hypothesis classification.

Automated diagnosis of epilepsy using CWT, HOS and texture parameters.

Epilepsy is a chronic brain disorder which manifests as recurrent seizures. Electroencephalogram (EEG) signals are generally analyzed to study the characteristics of epileptic seizures. In this work, we propose a method for the automated classification of EEG signals into normal, interictal and ictal classes using Continuous Wavelet Transform (CWT), Higher Order Spectra (HOS) and textures. First the CWT plot was obtained for the EEG signals and then the HOS and texture features were extracted from these plots. Then the statistically significant features were fed to four classifiers namely Decision Tree (DT), K-Nearest Neighbor (KNN), Probabilistic Neural Network (PNN) and Support Vector Machine (SVM) to select the best classifier. We observed that the SVM classifier with Radial Basis Function (RBF) kernel function yielded the best results with an average accuracy of 96%, average sensitivity of 96.9% and average specificity of 97% for 23.6 s duration of EEG data. Our proposed technique can be used as an automatic seizure monitoring software. It can also assist the doctors to cross check the efficacy of their prescribed drugs.

Non-invasive automated 3D thyroid lesion classification in ultrasound: A class of ThyroScan™ systems.

Ultrasound-based thyroid nodule characterization into benign and malignant types is limited by subjective interpretations. This paper presents a Computer Aided Diagnostic (CAD) technique that would present more objective and accurate classification and further would offer the physician a valuable second opinion. In this paradigm, we first extracted the features that quantify the local changes in the texture characteristics of the ultrasound off-line training images from both benign and malignant nodules. These features include: Fractal Dimension (FD), Local Binary Pattern (LBP), Fourier Spectrum Descriptor (FS), and Laws Texture Energy (LTE). The resulting feature vectors were used to build seven different classifiers: Support Vector Machine (SVM), Decision Tree (DT), Sugeno Fuzzy, Gaussian Mixture Model (GMM), K-Nearest Neighbor (KNN), Radial Basis Probabilistic Neural Network (RBPNN), and Naive Bayes Classifier (NBC). Subsequently, the feature vector-classifier combination that results in the maximum classification accuracy was used to predict the class of a new on-line test thyroid ultrasound image. Two data sets with 3D Contrast-Enhanced Ultrasound (CEUS) and 3D High Resolution Ultrasound (HRUS) images of 20 nodules (10 benign and 10 malignant) were used. Fine needle aspiration biopsy and histology results were used to confirm malignancy. Our results show that a combination of texture features coupled with SVM or Fuzzy classifiers resulted in 100% accuracy for the HRUS dataset, while GMM classifier resulted in 98.1% accuracy for the CEUS dataset. Finally, for each dataset, we have proposed a novel integrated index called Thyroid Malignancy Index (TMI) using the combination of FD, LBP, LTE texture features, to diagnose benign or malignant nodules. This index can help clinicians to make a more objective differentiation of benign/malignant thyroid lesions. We have compared and benchmarked the system with existing methods.

Automated classification of patients with coronary artery disease using grayscale features from left ventricle echocardiographic images

Coronary Artery Disease (CAD), caused by the buildup of plaque on the inside of the coronary arteries, has a high mortality rate. To efficiently detect this condition from echocardiography images, with lesser inter-observer variability and visual interpretation errors, computer based data mining techniques may be exploited. We have developed and presented one such technique in this paper for the classification of normal and CAD affected cases. A multitude of grayscale features (fractal dimension, entropies based on the higher order spectra, features based on image texture and local binary patterns, and wavelet based features) were extracted from echocardiography images belonging to a huge database of 400 normal cases and 400 CAD patients. Only the features that had good discriminating capability were selected using t-test. Several combinations of the resultant significant features were used to evaluate many supervised classifiers to find the combination that presents a good accuracy. We observed that the Gaussian Mixture Model (GMM) classifier trained with a feature subset made up of nine significant features presented the highest accuracy, sensitivity, specificity, and positive predictive value of 100%. We have also developed a novel, highly discriminative HeartIndex, which is a single number that is calculated from the combination of the features, in order to objectively classify the images from either of the two classes. Such an index allows for an easier implementation of the technique for automated CAD detection in the computers in hospitals and clinics.

Automated Screening of Arrhythmia Using Wavelet Based Machine Learning Techniques

Arrhythmia is one of the preventive cardiac problems frequently occurs all over the globe. In order to screen such disease at early stage, this work attempts to develop a system approach based on registration, feature extraction using discrete wavelet transform (DWT), feature validation and classification of electrocardiogram (ECG). This diagnostic issue is set as a two-class pattern classification problem (normal sinus rhythm versus arrhythmia) where MIT-BIH database is considered for training, testing and clinical validation. Here DWT is applied to extract multi-resolution coefficients followed by registration using Pan Tompkins algorithm based R point detection. Moreover, feature space is compressed using sub-band principal component analysis (PCA) and statistically validated using independent sample t-test. Thereafter, the machine learning algorithms viz., Gaussian mixture model (GMM), error back propagation neural network (EBPNN) and support vector machine (SVM) are employed for pattern classification. Results are studied and compared. It is observed that both supervised classifiers EBPNN and SVM lead to higher (93.41% and 95.60% respectively) accuracy in comparison with GMM (87.36%) for arrhythmia screening.

Statistical analysis of mammographic features and its classification using support vector machine

This study aims at designing a support vector machine (SVM)-based classifier for breast cancer detection with higher degree of accuracy. It introduces a best possible training scheme of the features extracted from the mammogram, by first selecting the kernel function and then choosing a suitable training-test partition. Prior to classification, detailed statistical analysis viz., test of significance, density estimation have been performed for identifying discriminating power of the features in between malignant and benign classes. A comparative study has been performed in respect to diagnostic measures viz., confusion matrix, sensitivity and specificity. Here we have considered two data sets from UCI machine learning database having nine and ten dimensional feature spaces for classification. Furthermore, the overall classification accuracy obtained by using the proposed classification strategy is 99.385% for dataset-I and 93.726% for dataset-II, respectively.

AUTOMATED GLAUCOMA DETECTION USING HYBRID FEATURE EXTRACTION IN RETINAL FUNDUS IMAGES

Glaucoma is one of the most common causes of blindness. Robust mass screening may help to extend the symptom-free life for affected patients. To realize mass screening requires a cost-effective glaucoma detection method which integrates well with digital medical and administrative processes. To address these requirements, we propose a novel low cost automated glaucoma diagnosis system based on hybrid feature extraction from digital fundus images. The paper discusses a system for the automated identification of normal and glaucoma classes using higher order spectra (HOS), trace transform (TT), and discrete wavelet transform (DWT) features. The extracted features are fed to a support vector machine (SVM) classifier with linear, polynomial order 1, 2, 3 and radial basis function (RBF) in order to select the best kernel for automated decision making. In this work, the SVM classifier, with a polynomial order 2 kernel function, was able to identify glaucoma and normal images with an accuracy of 91.67%, and sensitivity and specificity of 90% and 93.33%, respectively. Furthermore, we propose a novel integrated index called Glaucoma Risk Index (GRI) which is composed from HOS, TT, and DWT features, to diagnose the unknown class using a single feature. We hope that this GRI will aid clinicians to make a faster glaucoma diagnosis during the mass screening of normal/glaucoma images.

Automated classification of cells in sub-epithelial connective tissue of oral sub-mucous fibrosis-An SVM based approach

Quantitative evaluation of histopathological features is not only vital for precise characterization of any precancerous condition but also crucial in developing automated computer aided diagnostic system. In this study segmentation and classification of sub-epithelial connective tissue (SECT) cells except endothelial cells in oral mucosa of normal and OSF conditions has been reported. Segmentation has been carried out using multi-level thresholding and subsequently the cell population has been classified using support vector machine (SVM) based classifier. Moreover, the geometric features used here have been observed to be statistically significant, which enhance the statistical learning potential and classification accuracy of the classifier. Automated classification of SECT cells characterizes this precancerous condition very precisely in a quantitative manner and unveils the opportunity to understand OSF related changes in cell population having definite geometric properties. The paper presents an automated classification method for understanding the deviation of normal structural profile of oral mucosa during precancerous changes.

Plaque Tissue Characterization and Classification in Ultrasound Carotid Scans: A Paradigm for Vascular Feature Amalgamation

The selection of carotid atherosclerosis patients for surgery or stenting is a crucial task in atherosclerosis disease management. In order to select only those symptomatic cases who need surgery, we have, in this work, presented a computer-aided diagnostic technique to effectively classify symptomatic and asymptomatic plaques from B-mode ultrasound carotid images. We extracted several grayscale features that quantify the textural differences inherent in the manually delineated plaque regions and selected the most significant among these extracted features. These features, along with the degree of stenosis (DoS), were used to train and test a support vector machine (SVM) classifier using threefold stratified cross-validation using a data set consisting of 160 (50 symptomatic and 110 asymptomatic) images. Using 32 features in an SVM classifier with a polynomial kernel of order 1, we obtained the best accuracy of 90.66%, sensitivity of 83.33%, and specificity of 95.39%. The DoS was found to be a valuable feature in addition to other texture-based features. We have also proposed the plaque risk index (PRI) made up of a combination of significant features such that the PRI has unique ranges for both plaque classes. PRI can be used in monitoring the variations in features over a period of time which will provide evidence on how and which features change as asymptomatic plaques become symptomatic.

Statistical Analysis of Textural Features for Improved Classification of Oral Histopathological Images

The objective of this paper is to provide an improved technique, which can assist oncopathologists in correct screening of oral precancerous conditions specially oral submucous fibrosis (OSF) with significant accuracy on the basis of collagen fibres in the sub-epithelial connective tissue. The proposed scheme is composed of collagen fibres segmentation, its textural feature extraction and selection, screening perfomance enhancement under Gaussian transformation and finally classification. In this study, collagen fibres are segmented on R,G,B color channels using back-probagation neural network from 60 normal and 59 OSF histological images followed by histogram specification for reducing the stain intensity variation. Henceforth, textural features of collgen area are extracted using fractal approaches viz., differential box counting and brownian motion curve . Feature selection is done using Kullback–Leibler (KL) divergence criterion and the screening performance is evaluated based on various statistical tests to conform Gaussian nature. Here, the screening performance is enhanced under Gaussian transformation of the non-Gaussian features using hybrid distribution. Moreover, the routine screening is designed based on two statistical classifiers viz., Bayesian classification and support vector machines (SVM) to classify normal and OSF. It is observed that SVM with linear kernel function provides better classification accuracy (91.64%) as compared to Bayesian classifier. The addition of fractal features of collagen under Gaussian transformation improves Bayesian classifier’s performance from 80.69% to 90.75%. Results are here studied and discussed.