M.R. Aires-Barros

Cutinase : From molecular level to bioprocess development

This review analyzes the role of cutinases in nature and their potential biotechnological applications. The cloning and expression of a fungal cutinase, Fusarium solani f. pisi, in Escherichia coli and Saccharomyces cerevisiae hosts are described. The three-dimensional structure of this cutinase is also analyzed and its function as a lipase is discussed and compared with other lipases. The biocatalytic applications of cutinase are described taking into account the preparation of different cutinase forms and the media in which the different types of reactions have been performed, namely hydrolysis, esterification, transesterification, and resolution of racemic mixtures. The stability of cutinase preparations is discussed and, in particular, the cutinase stability in anionic reversed micelles is analyzed considering the role of hexanol as a substrate, a cosurfactant, and a stabilizer. Process development, based on the operation of cutinase reactors, is also reviewed.

Aqueous two-phase systems: A viable platform in the manufacturing of biopharmaceuticals

The number of biotechnology-based pharmaceuticals in the late-stage pipeline has been increasing more than ever. As a result, there is an enhanced demand for more efficient and cost-effective processes. During the last years, the upstream technology for the production of biopharmaceuticals has been considerably improved. Continuous discoveries in molecular biology and genetics, combined with new advances in media and feed development, have significantly increased the production titres. In order to keep up this gain, it is now essential to design new, as well as to improve the existing downstream processes that remain an unresolved bottleneck. This review evaluates several alternatives to the currently established platforms for the downstream processing biopharmaceuticals, with main focus on aqueous two-phase extraction.

Liquid−Liquid Extraction of Proteins with Reversed Micelles

The recovery of proteins using reversed micelles is a liquid−liquid extraction process that has received increasing attention since proteins were shown to be solubilized in organic solvents with surfactants, maintaining their functional properties, and to be transferred between an aqueous solution and a reversed micellar organic phase. This article reviews the application of reversed micellar systems as a bioseparation technique for isolation and purification of proteins. The parameters that affect protein solubilization into the reversed micelles and the equilibrium and kinetics aspects that are involved in the extraction and back‐extraction of proteins are discussed. Several examples are also described including the application of this technique for purification of recombinant proteins: cytochrome b5 and a cutinase from Fusarium solani pisi.

Magnetic separations in biotechnology

Magnetic separations are probably one of the most versatile separation processes in biotechnology as they are able to purify cells, viruses, proteins and nucleic acids directly from crude samples. The fast and gentle process in combination with its easy scale-up and automation provide unique advantages over other separation techniques. In the midst of this process are the magnetic adsorbents tailored for the envisioned target and whose complex synthesis spans over multiple fields of science. In this context, this article reviews both the synthesis and tailoring of magnetic adsorbents for bioseparations as well as their ultimate application.

Integrated process for the purification of antibodies combining aqueous two-phase extraction, hydrophobic interaction chromatography and size-exclusion chromatography.

We have evaluated a process incorporating aqueous two-phase extraction, hydrophobic interaction chromatography (HIC) and size-exclusion chromatography (SEC) for the purification of human immunoglobulin G (IgG) from a Chinese hamster ovary (CHO) cell supernatant. These unit operations were chosen not only for allowing the removal of target impurities but also for facilitating the integration of different process units without the need for any conditioning step. Extraction in aqueous two-phase systems (ATPSs), composed of polyethylene glycol (PEG) and sodium citrate, allowed the concentration of the antibodies in the citrate-rich phase and the removal of the most hydrophobic compounds in the PEG-rich phase. An ATPS composed of 10% (w/w) PEG 3350 and 12% (w/w) citrate, at pH 6, allowed the recovery of IgG with a 97% yield, 41% HPLC purity and 72% protein purity. This bottom phase was then directly loaded on a phenyl-Sepharose HIC column. This intermediate purification step allowed the capture of the antibodies using a citrate mobile phase with 99% of the antibody recovered in the elution fractions, with 86% HPLC purity and 91% protein purity. Finally, SEC allowed the final polishing by removing IgG aggregates. HIC-eluted fractions were directly injected in a Superose 6 size-exclusion column affording a 100% pure IgG solution with 90% yield.

Application of factorial design to the study of transesterification reactions using cutinase in AOT-reversed micelles

Abstract Fusarium solani pisi recombinant cutinase, solubilized in bis(2-ethylhexyl) sodium sulfosuccinate (AOT)/isooctane-reversed micelles, was used to catalyze the transesterification reaction of butyl acetate with hexanol. Some relevant parameters for the cutinase activity such as the amount of water, temperature, buffer molarity, pH, surfactant, and hexanol and butyl acetate concentrations were studied in two factorial designs. The experimental planning included 2 (5−1) and 2 (3) factorial designs expanded further to a central composite design (CCD) according to Box 1 and Barker. 2 By knowing the system response to the experimental design, the effects of each factor were calculated and its interactions were determined. The response surface methodology was applied to the optimization of the transesterification in the system described. Cutinase displayed high activities for 490 mM hexanol and a temperature around 40–50°C. The molar ratio of water to surfactant, Wo , greatly influenced the activity and showed an optimum range between 5–8.

Purification of lipases

Interest on lipases from different sources (microorganisms, animals and plants) has markedly increased in the last decade due to the potential applications of lipases in industry and in medicine. Microbial and mammalian lipases have been purified to homogeneity, allowing the successful determination of their primary aminoacid sequence and, more recently, of the three-dimensional structure. The X-ray studies of pure lipases will enable the establishment of the structure-function relationships and contribute for a better understanding of the kinetic mechanisms of lipase action on hydrolysis, synthesis and group exchange of esters. This article reviews the separation and purification techniques that were used in the recovery of microbial, mammalian and plant lipases. Several purification procedures are analysed taking into account the sequence of the methods and the number of times each method is used. Novel purification methods based on liquid-liquid extraction, membrane processes and immunopurification are also reviewed.

Cutinase structure, function and biocatalytic applications

This review analyses the role of cutinases in nature and their potential biotechnological applications. The cloning and expression of a fungal cutinase from Fusarium solani f. pisi, in Escherichia coli and Saccharomyces cerevisiae hosts are described. The three dimensional structure of this cutinase is also analysed and its function as a lipase discussed and compared with other lipases. The biocatalytic applications of cutinase are described taking into account the preparation of different cutinase forms and the media where the different types of enzymatic reactions have been performed, namely hydrolysis, esterification, transesterification and resolution of racemic mixtures. The stability of cutinase preparations is discussed, particularly in anionic reversed micelles considering the role of hexanol as substrate, co-surfactant and stabilizer. Process development based on the operation of cutinase reactors is also reviewed.

Reverse micelles and protein biotechnology.

Reverse micelles are nanometer-sized (1-10 nm) water droplets dispersed in organic media obtained by the action of surfactants. Surfactant molecules organize with the polar part to the inner side able to solubilize water and the apolar part in contact with the organic solvent. Proteins can be solubilized in the water pool of reverse micelles. Studies on the structure-function relationships of proteins in reverse micelles are very important since the microenvironment in which the protein is solubilized has physico-chemical properties distinct from a bulk aqueous solution. Some of the unique characteristics of reverse micelles make them very useful for biotechnological applications. Charge and hydrophilic/hydrophobic characteristics of the protein and the selection of surfactant can be used to achieve selective solubilization of proteins. This has been used to extend the classical liquid-liquid extraction with solvents to protein bioseparation. For biocatalysis the presence of a bulk organic solvent allow synthetic reactions to be performed via the control of water content and the solubilization of hydrophobic substrates. This is accomplished with a higher interfacial area (about 100 m2/mL) than the conventional biphasic systems, minimizing mass transfer problems.

Zeolites as supports for enzymatic hydrolysis reactions. Comparative study of several zeolites

Abstract Fusarium solani pisi recombinant cutinase was immobilised by adsorption on different zeolites and its activity towards the hydrolysis reaction of tricaprylin was measured. It was observed that the enzyme immobilised over most of the zeolites used (NaA, NaX, NaY, NaUSY and modified forms) was active for this reaction, although the specific activity depended strongly on the structure and composition of the zeolite support. This preliminary study of the use of zeolites as supports for enzymes was also extended by the analysis of the influence of the water content and of the thermal stability of one of the preparations. It can be concluded that the prospective use of zeolites as supports for enzymes in reactions involving organic media is very promising.