Maddalena Curci

Short-term effects of municipal solid waste compost amendments on soil carbon and nitrogen content, some enzyme activities and genetic diversity

Abstract. Municipal solid waste (MSW) composts have been frequently used as N and C amendments to improve soil quality and to support plant growth, with the additional benefit of reducing waste disposal costs. However, attention has been paid to the risks of MSW use for the soil environment. The presence of heavy metals in MSW composts can affect some microbiological characteristics of soil such as the structure of the soil microbiota, which are responsible for the transformations making nutrients available to plants. The effects of MSW compost and mineral-N amendments in a 2-year field trial on some physical-chemical properties, some enzyme activities and the genetic diversity of cropped plots (sugar beet-wheat rotation) and uncropped plots were investigated. Variations of pH were not statistically related to MSW compost and mineral-N amendments, or to the presence of the crop. Amendment with MSW compost increased the organic C and total N contents, and dehydrogenase and nitrate reductase activities of soil. In cropped plots amended with MSW compost, dehydrogenase activity was positively correlated with β-glucosidase activity, and both enzyme activities with organic C content. No MSW compost dosage effect was detected. No effects were observed on denaturing gradient gel electrophoresis and amplified rDNA restriction analysis patterns, indicating that no significant change in the bacterial community occurred as a consequence of MSW amendment.

Effects of conventional tillage on biochemical properties of soils

Abstract Modification of soil environment by different farming practices can significantly affect crop growth. Tillage causes soil disturbance, altering the vertical distribution of soil organic matter and plant nutrient supplies in the soil surface, and it may affect the enzyme activity and microbial biomass which are responsible for transformation and cycling of organic matter and plant nutrients. In this study, the influence of three conventional tillage systems (shallow plowing, deep plowing and scarification) at different depths on the distribution and activity of enzymes, microbial biomass and nucleic acids in a cropped soil was investigated. Analysis of variance for depth and tillage showed the influence of the different tillage practices on the activity of some enzymes and on the nucleic acids. Glucosidase, galactosidase, nitrate reductase and dehydrogenase activity were significantly affected by the three tillage modalities. Activity in the upper layer (0–20 cm) was higher in the plots tilled by shallow plowing and scarification than in those tilled by deep plowing. Positive relationships were observed between the soil enzymes themselves, with the exception of urease and pyrophosphatase activity. Moreover, significant correlations were found between DNA and β-galactosidase, and between RNA and β-glucosidase, β-galactosidase, alkaline phosphatase and phosphodiesterase. α-Glucosidase, β-galactosidase, alkaline phosphatase and phosphodiesterase were highly correlated with biomass C determined by the fumigation-extraction method.

Molecular approaches to investigate herbicide-induced bacterial community changes in soil microcosms

Abstract. Since biochemical and microbiological methods used to study microbial community changes induced by anthropogenic activities can be biased, the impact of two herbicides on soil microorganisms was investigated by culture-independent molecular techniques. The effect of three different amounts (the recommended field dose, tenfold, and 100-fold the dose) of propanil or prometryne on the bacterial community of a clay soil, two modalities of incubation (soil moisture at 70% of the field capacity and a soil-herbicide suspension, 1:10, w:v), and time of incubation were investigated by denaturing gradient gel electrophoresis (DGGE) and amplified rDNA restriction analysis (ARDRA). Two sets of primers for 16S rDNA were used to amplify total soil DNA. Sterile and non-sterile samples were used to determine, by HPLC, the amounts of herbicides adsorbed on soil and transformed by soil microorganisms. Prometryne persisted in soil longer than propanil. Propanil was removed significantly more by non-sterile than by sterile samples, while for prometryne, slight differences were observed. 3,4-Dichloroaniline, a product of propanil hydrolysis, was detected in non-sterile samples and increased with incubation time. Propanil did not affect soil bacteria significantly as indicated by DGGE and ARDRA, with the only exception being the soil-herbicide suspension. Despite a lower utilization of prometryne by soil microorganisms, DGGE analysis showed a more diverse banding than with propanil. Some bands were also detected in the DNA sample extracted from the soil-prometryne suspension, and could be representative of bacterial species utilizing the herbicide as a carbon source, in two very different soil microcosms.

Genetic, Functional, and Metabolic Responses of Soil Microbiota in a Sustainable Olive Orchard

The aim of the present work was to evaluate the effects of two soil management systems so called sustainable treatment (ST) and conventional treatment (CT) on the composition and on genetic, functional, and metabolic diversity of soil microbial communities in a Mediterranean olive orchard. The ST system included no-tillage, integrated chemical fertilization, and organic matter inputs from drip irrigation, spontaneous cover crops, and pruning material. Microbial analyses were carried out by an integrated approach of culture-dependent (microbial cultures and Biolog) and culture-independent methods (denaturing gradient gel electrophoresis [DGGE]). After 7 years of treatment, average olive yield was 8.4 and 3.1 t ha−1 year−1 in ST and CT, respectively. Conventional treatment had a significantly higher number of total culturable bacteria and actinomycetes compared with ST, whereas fungi were significantly lower. In ST, the number of ammonifying bacteria, proteolytic bacteria, and Azotobacter in the wetted areas under the drippers (ST-WET) was significantly higher than along interrows (ST-INTER). The DGGE analysis of microbial 16S/18S rDNA showed differences between ST and CT, whereas 16S/18S rRNA DGGE bands of ST-WET clustered differently from those of CT and ST-INTER. Some Biolog metabolic indexes were significantly different between ST and CT. The results revealed qualitative and quantitative changes of soil microbial communities in response to sustainable agricultural practices that stimulate soil microorganism activity and improve olive yield and fruit quality.

Changes in composition and activity of soil microbial communities in peach and kiwifruit Mediterranean orchards under an innovative management system

The aim of this work was to evaluate the effects of 2 soil management systems, so called ‘innovative’ (INN) and ‘conventional’ (CON), on genetic and metabolic diversity of soil microbial communities of peach and kiwifruit orchards. INN system included minimum tillage, organic matter inputs from compost and cover crops, winter pruning, and adequate irrigation and fertilisation. CON system was characterised by conventional tillage, zero organic input, empirical pruning, strong chemical fertilisation, and excessive irrigation. After 4 years of treatments, soil samples were collected in different orchard sites. In peach and kiwifruit INN orchards, average fruit yields were significantly higher than in CON. INN orchards had a significantly higher total number of bacteria. The patterns of denaturing gradient gel electrophoresis of bacterial 16S rDNA/RNA from peach orchard showed differences between soils under drip emitters and along the inter-rows, whereas those from kiwifruit orchard clearly distinguished between INN and CON for both bacteria (16S rRNA) and fungi (18S rDNA/RNA). Shannon’s substrate diversity index, evaluated by Biolog® metabolic assay, was affected by soil treatment in peach orchard and by soil depth in kiwifruit orchard. Principal component analysis of Biolog® values clearly discriminated INN and CON soils of both orchards. The results revealed qualitative and quantitative changes of soil microbial communities in response to an innovative and sustainable soil management.