Manuel Smeu

Conduction Pathway of π-Stacked Ethylbenzene Molecular Wires on Si(100)

One of the most important challenges of molecular electronics is to enable systematic fabrication of molecular functional components on well-characterized solid-state substrates in a controlled manner. Recently, experimental techniques were developed to achieve such fabrication where lines of pi-stacked ethylbenzene molecules are induced to self-assemble on an H-terminated Si(100) surface at precise locations and along precise directions. In this work, we theoretically analyze charge transport properties of these ethylbenzene wires using a state-of-the-art first-principles technique where density functional theory (DFT) is used within the nonequilibrium Greens function formalism (NEGF). Our device model consists of ethylbenzene stacks bonded to an H-terminated Si(100) surface and bridging two metal leads. The electron transmission spectrum and its associated scattering states as well as the resistance of the molecular wire are determined by the self-consistent NEGF-DFT formalism. The transmission spectrum has a resonance nature for energies around the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) of the ethylbenzene wires. However, near the Fermi level of the device, which sits inside the HOMO-LUMO gap, the Si substrate is found to play an important role in providing additional pathways for conduction. It has emerged that, within our model system, the transmission peak nearest to the Fermi level corresponds to transport through the Si substrate and not the pi-stacked molecular line. The low-bias resistance R is found to increase exponentially with the length of the molecular line n, as R approximately e(betan), indicating a tunneling behavior in conduction. We further found that the exponential scaling has two regimes characterized by two different scaling parameters beta: a high value for conduction through the molecular stack in short lines and a lower value for conduction through the substrate in longer lines. Our results suggest that when the conduction of molecular wires bonded to semiconductor substrates is theoretically analyzed, conduction pathways through the substrate need to be taken into account.

Molecular Spintronics: Destructive Quantum Interference Controlled by a Gate

The ability to control the spin-transport properties of a molecule bridging conducting electrodes is of paramount importance to molecular spintronics. Quantum interference can play an important role in allowing or forbidding electrons from passing through a system. In this work, the spin-transport properties of a polyacetylene chain bridging zigzag graphene nanoribbons (ZGNRs) are studied with nonequilibrium Greens function calculations performed within the density functional theory framework (NEGF-DFT). ZGNR electrodes have inherent spin polarization along their edges, which causes a splitting between the properties of spin-up and spin-down electrons in these systems. Upon adding an imidazole donor group and a pyridine acceptor group to the polyacetylene chain, this causes destructive interference features in the electron transmission spectrum. Particularly, the donor group causes a large antiresonance dip in transmission at the Fermi energy EF of the electrodes. The application of a gate is investigated and found to provide control over the energy position of this feature making it possible to turn this phenomenon on and off. The current-voltage (I-V) characteristics of this system are also calculated, showing near ohmic scaling for spin-up but negative differential resistance (NDR) for spin-down.

Single‐Molecule Sensing of Environmental pH—an STM Break Junction and NEGF‐DFT Approach

Sensors play a significant role in the detection of toxic species and explosives, and in the remote control of chemical processes. In this work, we report a single-molecule-based pH switch/sensor that exploits the sensitivity of dye molecules to environmental pH to build metal-molecule-metal (m-M-m) devices using the scanning tunneling microscopy (STM) break junction technique. Dyes undergo pH-induced electronic modulation due to reversible structural transformation between a conjugated and a nonconjugated form, resulting in a change in the HOMO-LUMO gap. The dye-mediated m-M-m devices react to environmental pH with a high on/off ratio (≈100:1) of device conductivity. Density functional theory (DFT) calculations, carried out under the non-equilibrium Greens function (NEGF) framework, model charge transport through these molecules in the two possible forms and confirm that the HOMO-LUMO gap of dyes is nearly twice as large in the nonconjugated form as in the conjugated form.

Molecular Junctions: Can Pulling Influence Optical Controllability?

We suggest the combination of single molecule pulling and optical control as a way to enhance control over the electron transport characteristics of a molecular junction. We demonstrate using a model junction consisting of biphenyl-dithiol coupled to gold contacts. The junction is pulled while optically manipulating the dihedral angle between the two rings. Quantum dynamics simulations show that molecular pulling enhances the degree of control over the dihedral angle and hence over the transport properties.

Conductivity of Si(111)-(7×7): the role of a single atomic step.

While it is known that the Si-(7×7) is a conducting surface, measured conductivity values differ by 7 orders of magnitude. Here we report a combined STM and transport method capable of surface conductivity measurement of step-free or single-step containing surface regions and having minimal interaction with the sample, and by which we quantitatively determine the intrinsic conductivity of the Si-(7×7) surface. We found that a single step has a conductivity per unit length about 50 times smaller than the flat surface. Our first principles quantum transport calculations confirm and lend insight into the experimental observation.

Conduction modulation of π-stacked ethylbenzene wires on Si(100) with substituent groups

For the realization of molecular electronics, one essential goal is the ability to systematically fabricate molecular functional components in a well-controlled manner. Experimental techniques have been developed such that π-stacked ethylbenzene molecules can now be routinely induced to self-assemble on an H-terminated Si(100) surface at precise locations and along precise directions. Electron transport calculations predict that such molecular wires could indeed carry an electrical current, but the Si substrate may play a considerable role as a competing pathway for conducting electrons. In this work, we investigate the effect of placing substituent groups of varying electron donating or withdrawing strengths on the ethylbenzene molecules to determine how they would affect the transport properties of such molecular wires. The systems consist of a line of π-stacked ethylbenzene molecules covalently bonded to a Si substrate. The ethylbenzene line is bridging two Al electrodes to model current through the molecular stack. For our transport calculations, we employ a first-principles technique where density functional theory (DFT) is used within the non-equilibrium Green’s function formalism (NEGF). The calculated density of states suggest that substituent groups are an effective way to shift molecular states relative to the electronic states associated with the Si substrate. The electron transmission spectra obtained from the NEGF–DFT calculations reveal that the transport properties could also be extensively modulated by changing substituent groups. For certain molecules, it is possible to have a transmission peak at the Fermi level of the electrodes, corresponding to high conduction through the molecular wire with essentially no leakage into the Si substrate.

Modeling ion sensing in molecular electronics

We examine the ability of molecules to sense ions by measuring the change in molecular conductance in the presence of such charged species. The detection of protons (H(+)), alkali metal cations (M(+)), calcium ions (Ca(2+)), and hydronium ions (H3O(+)) is considered. Density functional theory (DFT) is used within the Keldysh non-equilibrium Greens function framework (NEGF) to model electron transport properties of quinolinedithiol (QDT, C9H7NS2), bridging Al electrodes. The geometry of the transport region is relaxed with DFT. The transport properties of the device are modeled with NEGF-DFT to determine if this device can distinguish among the M(+) + QDT species containing monovalent cations, where M(+) = H(+), Li(+), Na(+), or K(+). Because of the asymmetry of QDT in between the two electrodes, both positive and negative biases are considered. The electron transmission function and conductance properties are simulated for electrode biases in the range from -0.5 V to 0.5 V at increments of 0.1 V. Scattering state analysis is used to determine the molecular orbitals that are the main contributors to the peaks in the transmission function near the Fermi level of the electrodes, and current-voltage relationships are obtained. The results show that QDT can be used as a proton detector by measuring transport through it and can conceivably act as a pH sensor in solutions. In addition, QDT may be able to distinguish among different monovalent species. This work suggests an approach to design modern molecular electronic conductance sensors with high sensitivity and specificity using well-established quantum chemistry.