Maria R. Finckh

Challenges to Organic Potato Farming: Disease and Nutrient Management

For organic potato producers the two main challenges are disease and nutrient management. Both factors are limited by regulations that on the one hand prohibit the use of chemical fertilisers, especially nitrogen and, on the other hand, most synthetic pesticides. Late blight, caused by Phytophthora infestans is commonly thought to be the factor most limiting yield. However, because there is no really effective fungicide available to control late blight, there are virtually no yield loss data available for organic farming conditions. In this paper the state of the art of organic potato management with respect to disease and nutrient management is summarised. In a second part, the interactive effects of N-availability in the soil, climatic conditions and late blight were studied in the presence and absence of copper fungicides from 2002–2004 for the mid-early main-crop potato cv. Nicola. From the experimental work it became clear that copper fungicides in most cases do slow down epidemics adding an average of 3 days to the growth duration. However, only 30% of the variation in yield could be attributed to disease reduction. A model including disease reduction, growth duration and temperature sum from planting until 60% disease severity was reached, and soil mineral N contents at 10 days after emergence could explain 75% of the observed variation in yield. However, the model failed when N-supply was extremely high. The implications of the results on the management of organic potatoes with respect to cultivar choice, nutrient and disease management are discussed. In conclusion, several points emerge from the results: In organic farming, yields are foremost limited by nutrient availability in spring and early summer. The effects of late blight on yields may often be overestimated and cannot be deducted from results in conventional farming because of the strong interaction with nutrient status. Resistance clearly remains the most important strategy against late blight in organic potato production. However, as important or even more important than resistance is the early development and bulking behaviour and the ability of a cultivar to make use of organic nutrients efficiently. In the absence of efficient organic pesticides it is possible to reduce blight pressure to a certain extent by arranging the crop in small narrow fields perpendicular to the main wind direction neighboured either by non-hosts or completely resistant potatoes.

Plant competition and disease in genetically diverse wheat populations

SummaryThe direct and indirect effects of plant genetic diversity on epidemics and the influence of disease on plant competition were investigated using the wheat (Triticum aestivum)/stripe rust (Puccinia striiformis) system. Replacement series consisting of a susceptible and a resistant wheat genotype or two wheat genotypes susceptible to different races of stripe rust were grown in the presence and absence of the pathogen. Stripe rust severity, number of seed heads, seed yield, and seed weight were determined separately for each wheat genotype in the mixtures and the pure stands. The frequency of susceptible genotypes in a mixture explained up to 67% of the variation in disease severity. However, competitive interactions among plant genotypes sometimes appeared to alter susceptibility and obscured the relationship. In pure stands of single genotypes, disease severity explained between 52 and 58% of the variation in seed yield. In mixtures, coefficients of determination were only 10 and 31%, suggesting a strong influence of plant-plant interactions on seed yield. These results suggest that host-parasite coevolutionary models need to account for the strong effect that specific plant genotype combinations may have on disease severity and plant reproduction.

Resilience as a universal criterion of health

To promote and maintain health in agricultural and food systems, appropriate criteria are needed for the description and assessment of the health of soils, plants, animals, humans and ecosystems. Here we identify the concept of resilience as a universally applicable and fundamentally important criterion of health in all relevant areas of agriculture. We discuss definitions of resilience for soils, plants, animals, humans and ecosystems, and explore ways in which resilience can be applied as a criterion of health in different agricultural contexts. We show how and why resilience can be seen as a key criterion of health. Based on this, we discuss how resilience can be used as a link between soil, plant, animal, human and ecosystem health. Finally, we highlight four key areas for future research on resilience in agriculture, namely spatial and temporal scaling of resilience; effects of diversity; the role of networks for resilience; and stakeholder involvement.

Effects of enhanced UV-B radiation on the growth of rice and its susceptibility to rice blast under glasshouse conditions

Abstract The effects of enhanced UV-B (280–320 nm) on the susceptibility of 18 irrigated lowland rice cultivars to rice blast (Pyricularia grisea) were investigated. The rice cultivars were irradiated with UV-B 313 lamps that were either filtered with cellulose acetate of 0.13 mm thickness (light transmission greater than 290 nm) or with Mylar D of 0.13 mm thickness (light transmission greater than 320 nm). Irradiation was for 6 h daily for 21 days starting at 9 days after planting. After irradiation, plants were inoculated with one or two blast isolates. In 18 out of 36 measured interactions the number of lesions per plant was higher in the presence of UV-B than in its absence. However, only two interactions were statistically significant. In a second experiment the dose-response relationship between the cultivars IR30 and IR72 and UV-B was established in the presence and absence of disease. Increasing levels of UV-B significantly reduced leaf areas, dry weights, and heights of both cultivars. Disease severity was either unaffected or decreased by UV-B. However, disease significantly changed the effects of UV-B on plant growth and recovery from UV-B damage. IR30 but not IR72 recovered from UV-B damage in the absence of disease within 5 days. No recovery occurred when inoculated. IR72 suffered even greater reductions of leaf area and dry weight by UV-B when inoculated. Although the effects of UV-B on disease severity may be small, it appears that the tolerance of plants to disease is decreased by UV-B radiation.

Plant disease management in organic farming systems

Organic farming (OF) has significantly increased in importance in recent decades. Disease management in OF is largely based on the maintenance of biological diversity and soil health by balanced crop rotations, including nitrogen-fixing and cover crops, intercrops, additions of manure and compost and reductions in soil tillage. Most soil-borne diseases are naturally suppressed, while foliar diseases can sometimes be problematic. Only when a severe disease outbreak is expected are pesticides used that are approved for OF. A detailed overview is given of cultural and biological control measures. Attention is also given to regulated pesticides. We conclude that a systems approach to disease management is required, and that interdisciplinary research is needed to solve lingering disease problems, especially for OF in the tropics. Some of the organic regulations are in need of revision in close collaboration with various stakeholders.

Pathogenic variability of Pyricularia grisea from the high- and mid-elevation zones of Bhutan.

ABSTRACT Thirty isolates of P. griseacollected from rice during a blast epidemic in 1995 in the high (1,800 to 2,600 m) and middle (1,200 to 1,800 m) elevations of Bhutan and 80 isolates collected from one rice cultivar from two high- and two mid-elevation sites in 1996 were analyzed for virulence. Differential varieties were indica CO39, with five near-isogenic lines (NILs) for resistance genes in the genetic background of CO39, and japonica Lijiangxintuanheigu (LTH), with five NILs for LTH. Twelve selected Bhutanese landraces also were studied. In addition, 10 blast nurseries consisting of the NIL sets, important local landraces, and representatives of international differential groups were established in the 1996 and 1997 growing seasons in the mid- and high-elevation agroecological zones. The 110 isolates were differentiated into 53 pathotypes based on the 2 NIL sets. Thirteen isolates were avirulent on all of the NILs but were compatible with some landraces. Several isolates were able to attack one of the NILs of CO39 but not CO39. These results strongly suggest that both CO39 and LTH possess previously unidentified resistance. The landraces were not uniform in their reactions to the isolates. When a reaction index taking into account all individual plant reactions was used, isolates that had been assigned to the same pathotype could be further differentiated, indicating that the NIL sets could not completely discriminate virulences in Bhutanese P. grisea populations. In the trap nurseries, disease was always present in the middle elevations, but disease was very low during July 1996 in the high elevations and only present during August and September 1997. Almost all varietal groups were more frequently attacked in the middle than in the high elevations, indicating that the virulence spectrum is wider and the conduciveness of the environment is greater in the middle elevations. Landraces from the high elevations were most susceptible, followed by international differential groups 7 and 8. The results suggest that selection has yielded landraces with more complete and complex resistance in the more disease-conducive mid-elevation environment. At the same time, the pathogen population also possesses a wider virulence spectrum in that environment.

Plant Diseases and Management Approaches in Organic Farming Systems.

Organic agriculture has expanded worldwide. Numerous papers were published in the past 20 years comparing plant diseases in organic and conventional crops. Root diseases are generally less severe owing to greater soil health, whereas some foliar diseases can be problematic in organic agriculture. The soil microbial community and nitrogen availability play an important role in disease development and yield. Recently, the focus has shifted to optimizing organic crop production by improving plant nutrition, weed control, and plant health. Crop-loss assessment relating productivity to all yield-forming and -reducing factors would benefit organic production and sustainability evaluation.

Environmental and health effects of the herbicide glyphosate

The herbicide glyphosate, N-(phosphonomethyl) glycine, has been used extensively in the past 40years, under the assumption that side effects were minimal. However, in recent years, concerns have increased worldwide about the potential wide ranging direct and indirect health effects of the large scale use of glyphosate. In 2015, the World Health Organization reclassified glyphosate as probably carcinogenic to humans. A detailed overview is given of the scientific literature on the movement and residues of glyphosate and its breakdown product aminomethyl phosphonic acid (AMPA) in soil and water, their toxicity to macro- and microorganisms, their effects on microbial compositions and potential indirect effects on plant, animal and human health. Although the acute toxic effects of glyphosate and AMPA on mammals are low, there are animal data raising the possibility of health effects associated with chronic, ultra-low doses related to accumulation of these compounds in the environment. Intensive glyphosate use has led to the selection of glyphosate-resistant weeds and microorganisms. Shifts in microbial compositions due to selective pressure by glyphosate may have contributed to the proliferation of plant and animal pathogens. Research on a link between glyphosate and antibiotic resistance is still scarce but we hypothesize that the selection pressure for glyphosate-resistance in bacteria could lead to shifts in microbiome composition and increases in antibiotic resistance to clinically important antimicrobial agents. We recommend interdisciplinary research on the associations between low level chronic glyphosate exposure, distortions in microbial communities, expansion of antibiotic resistance and the emergence of animal, human and plant diseases. Independent research is needed to revisit the tolerance thresholds for glyphosate residues in water, food and animal feed taking all possible health risks into account.

What is the SMARTest way to breed plants and increase agrobiodiversity

The evaluation and use of the vast diversity contained in plant genetic resources (PGR) is a main challenge for today’s plant breeding. The use of molecular markers has hugely increased the knowledge about genetic diversity and great hopes are raised about the potential of marker assisted selection [MAS; sometimes also termed SMART breeding (Selection with Markers and Advanced Reproductive Technologies)] to help increasing the use of PGR and maintaining crop genetic diversity. Another approach growing attention has been paid to over the past two decades and which also aims to increase variation in crops is evolutionary and participatory breeding (EPB). In this paper we discuss both the potential of marker-assisted breeding strategies and the potential of EPB breeding to contribute to the maintenance, increase and development of agrobiodiversity. The potentials of molecular markers in the evaluation and use of PGR and their documented contribution to agrobiodiversity are reviewed and results from guided interviews with scientists and breeders are given. Despite tremendous research efforts involving molecular markers, it is still difficult to obtain a clear picture how molecular markers contribute to the use of PGR in plant breeding. Minor and major crops do not benefit to the same degree from recent developments in marker technology. It therefore depends at least in part on economic considerations whether SMART breeding or EPB strategies or both are implemented in the breeding process of a crop. A general decision in favor or against MAS or EPB when breeding for diversity would not yield optimum results.

Temporal dynamics of plant competition in genetically diverse wheat populations in the presence and absence of stripe rust

1. Effects of disease and environment on competitive interactions among wheat genotypes were investigated. Five wheat genotypes were grown in up to six different two-way combinations and as pure stands in two or three locations during one to three growing seasons in the presence and absence of wheat stripe rust (caused by Puccinia striiformis). 2. Overall yield of the mixtures relative to the means of the monocultures did not differ among locations and years. However, interactions between genotypes were often affected by location and to a lesser degree by year. Disease significantly affected seed weight and seed number of the two susceptible genotypes in pure stands and in mixtures. Disease also led to changes in competitive interactions between resistant and susceptible genotypes. 3. Competitive interactions among genotypes often changed from early in the season (as measured by the number of tillers) to late in the season (as measured by yield per tiller). In a few mixtures negative correlations between early competitive ability (relative number of tillers) and components of late competition suggested that intra-genotypic competition might have been stronger than inter-genotypic competition.