Markus Wieland

An automated field phenotyping pipeline for application in grapevine research.

Due to its perennial nature and size, the acquisition of phenotypic data in grapevine research is almost exclusively restricted to the field and done by visual estimation. This kind of evaluation procedure is limited by time, cost and the subjectivity of records. As a consequence, objectivity, automation and more precision of phenotypic data evaluation are needed to increase the number of samples, manage grapevine repositories, enable genetic research of new phenotypic traits and, therefore, increase the efficiency in plant research. In the present study, an automated field phenotyping pipeline was setup and applied in a plot of genetic resources. The application of the PHENObot allows image acquisition from at least 250 individual grapevines per hour directly in the field without user interaction. Data management is handled by a database (IMAGEdata). The automatic image analysis tool BIVcolor (Berries in Vineyards-color) permitted the collection of precise phenotypic data of two important fruit traits, berry size and color, within a large set of plants. The application of the PHENObot represents an automated tool for high-throughput sampling of image data in the field. The automated analysis of these images facilitates the generation of objective and precise phenotypic data on a larger scale.

Direct Georeferencing of Micro Aerial Vehicles – System Design, System Calibration and First Evaluation Tests

& TIAN 2011), infrastructure inspection (MERZ & KENDOUL 2011) or surveying (EISENBEISS et al. 2005)UAVs are meanwhile often deployed. Recently, there has been a discussion concerning the term UAV. Since this paper is particularly dealing with lightweight UAVs the more specific termMAV (micro aerial vehicle) will be used throughout this paper. MAVs can generally be characterized having a weight limit of 5 kg and a size limit of 1.5 m (EISENBEISS 2009).

Towards Automated Large-Scale 3D Phenotyping of Vineyards under Field Conditions

In viticulture, phenotypic data are traditionally collected directly in the field via visual and manual means by an experienced person. This approach is time consuming, subjective and prone to human errors. In recent years, research therefore has focused strongly on developing automated and non-invasive sensor-based methods to increase data acquisition speed, enhance measurement accuracy and objectivity and to reduce labor costs. While many 2D methods based on image processing have been proposed for field phenotyping, only a few 3D solutions are found in the literature. A track-driven vehicle consisting of a camera system, a real-time-kinematic GPS system for positioning, as well as hardware for vehicle control, image storage and acquisition is used to visually capture a whole vine row canopy with georeferenced RGB images. In the first post-processing step, these images were used within a multi-view-stereo software to reconstruct a textured 3D point cloud of the whole grapevine row. A classification algorithm is then used in the second step to automatically classify the raw point cloud data into the semantic plant components, grape bunches and canopy. In the third step, phenotypic data for the semantic objects is gathered using the classification results obtaining the quantity of grape bunches, berries and the berry diameter.

Solifluction meets vegetation: the role of biogeomorphic feedbacks for turf‐banked solifluction lobe development

Vegetation is an important factor influencing solifluction processes, while at the same time, solifluction processes and landforms influence species composition, fine-scale distribution and corresponding ecosystem functioning. However, how feedbacks between plants and solifluction processes influence the development of turf-banked solifluction lobes (TBLs) and their geomorphic and vegetation patterns is still poorly understood. We addressed this knowledge gap in a detailed biogeomorphic investigation in the Turtmann glacier foreland (Switzerland). Methods employed include geomorphic and vegetation mapping, terrain assessment with unmanned aerial vehicle (UAV) and temperature logging. Results were subsequently integrated with knowledge from previous geomorphic and ecologic studies into a conceptual model. Our results show that geomorphic and vegetation patterns at TBLs are closely linked through the lobe elements tread, risers and ridge. A conceptual four-stage biogeomorphic model of TBL development with ecosystem engineering by the dwarf shrub Dryas octopetala as the dominant process can explain these interlinked patterns. Based on this model, we demonstrate that TBLs are biogeomorphic structures and follow a cyclic development, during which the role of their components for engineer and non-engineer species changes. Our study presents the first biogeomorphic model of TBL development and highlights the applicability and necessity of biogeomorphic approaches and research in periglacial environments. Copyright

Development, Calibration and Evaluation of a Portable and Direct Georeferenced Laser Scanning System for Kinematic 3D Mapping

Abstract In recent years, kinematic laser scanning has become increasingly popular because it offers many benefits compared to static laser scanning. The advantages include both saving of time in the georeferencing and a more favorable scanning geometry. Often mobile laser scanning systems are installed on wheeled platforms, which may not reach all parts of the object. Hence, there is an interest in the development of portable systems, which remain operational even in inaccessible areas. The development of such a portable laser scanning system is presented in this paper. It consists of a lightweight direct georeferencing unit for the position and attitude determination and a small low-cost 2D laser scanner. This setup provides advantages over existing portable systems that employ heavy and expensive 3D laser scanners in a profiling mode. A special emphasis is placed on the system calibration, i. e. the determination of the transformation between the coordinate frames of the direct georeferencing unit and the 2D laser scanner. To this end, a calibration field is used, which consists of differently orientated georeferenced planar surfaces, leading to estimates for the lever arms and boresight angles with an accuracy of mm and one-tenth of a degree. Finally, point clouds of the mobile laser scanning system are compared with georeferenced point clouds of a high-precision 3D laser scanner. Accordingly, the accuracy of the system is in the order of cm to dm. This is in good agreement with the expected accuracy, which has been derived from the error propagation of previously estimated variance components.

Phenoliner: A New Field Phenotyping Platform for Grapevine Research

In grapevine research the acquisition of phenotypic data is largely restricted to the field due to its perennial nature and size. The methodologies used to assess morphological traits and phenology are mainly limited to visual scoring. Some measurements for biotic and abiotic stress, as well as for quality assessments, are done by invasive measures. The new evolving sensor technologies provide the opportunity to perform non-destructive evaluations of phenotypic traits using different field phenotyping platforms. One of the biggest technical challenges for field phenotyping of grapevines are the varying light conditions and the background. In the present study the Phenoliner is presented, which represents a novel type of a robust field phenotyping platform. The vehicle is based on a grape harvester following the concept of a moveable tunnel. The tunnel it is equipped with different sensor systems (RGB and NIR camera system, hyperspectral camera, RTK-GPS, orientation sensor) and an artificial broadband light source. It is independent from external light conditions and in combination with artificial background, the Phenoliner enables standardised acquisition of high-quality, geo-referenced sensor data.

Direct Georeferencing for Portable Mapping Systems: In the Air and on the Ground

AbstractDuring the last few years, the acquisition of geometric information about objects by using a moving sensor platform has gained increasing popularity in the surveying community. A large numb...