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Featured researches published by Martin Kočí.


Journal of Vegetation Science | 2003

Formalized reproduction of an expert-based phytosociological classification: A case study of subalpine tall-forb vegetation

Martin Kočí; Milan Chytrý; Lubomír Tichý

Abstract Delimitation of vegetation units in phytosociology is traditionally based on expert knowledge. Applications of expert-based classifications are often inconsistent because criteria for assigning relevés to vegetation units are seldom given explicitly. Still, there is, e.g. in nature conservation, an increasing need for a consistent application of vegetation classification using computer expert systems for unit identification. We propose a procedure for formalized reproduction of an expert-based vegetation classification, which is applicable to large phytosociological data sets. This procedure combines Bruelheides Cocktail method with a similarity-based assignment of relevés to constancy columns of a vegetation table. As a test of this method we attempt to reproduce the expert-based phytosociological classification of subalpine tall-forb vegetation of the Czech Republic which has been made by combination of expert judgement and stepwise numerical classification of 718 relevés by TWINSPAN. Applying the Cocktail method to a geographically stratified data set of 21 794 relevés of all Czech vegetation types, we defined groups of species with the statistical tendency of joint occurrences in vegetation. Combinations of 12 of these species groups by logical operators AND, OR and AND NOT yielded formal definitions of 14 of 16 associations which had been accepted in the expert-based classification. Application of these formal definitions to the original data set of 718 relevés resulted in an assignment of 376 relevés to the associations. This assignment agreed well with the original expert-based classification. Relevés that remained unassigned because they had not met the requirements of any of the formal definitions, were subsequently assigned to the associations by calculating similarity to relevé groups that had already been assigned to the associations. A new index, based on frequency and fidelity, was proposed for calculating similarity. The agreement with the expert-based classification achieved by the formal definitions was still improved after applying the similarity-based assignment. Results indicate that the expert-based classification can be successfully formalized and converted into a computer expert system. Nomenclature: Kubát et al. (2002). Abbreviations: FDI = Fidelity Index; FFI = Frequency-Fidelity Index; FQI = Frequency Index.


Plant Ecology | 2013

Plant species richness–productivity relationships in a low-productive boreal region

Irena Axmanová; Milan Chytrý; Jiří Danihelka; Pavel Lustyk; Martin Kočí; Svatava Kubešová; Michal Horsák; Mikhail Cherosov; Paraskovia Gogoleva

Local species richness–productivity (SR–P) relationship is usually reported as unimodal if long productivity gradients are sampled. However, it tends to be monotonically increasing in low-productive environments due to the decreasing part of the SR–P curve being truncated. Previous work indicated that this can hold true for forest herb layers, because of an upper bound on productivity caused mainly by canopy shading. Here, we ask whether the same pattern exists in a region with an upper bound on productivity caused by a harsh climate. We sampled herbaceous vegetation of boreal forests and grasslands in a low-productive region of central Yakutia (NE Siberia) with dry and winter-cool continental climate. We collected data on species composition, herb-layer productivity (aboveground herbaceous biomass), soil chemistry and light availability. We applied regression models to discriminate between monotonically increasing, decreasing and unimodal responses of herb-layer species richness to measured variables and analysed trends in the species-pool size and beta diversity along the productivity gradient. Our expectation of the monotonically increasing SR–P relationship was confirmed for neither forest herb layers nor grasslands. In the forest herb layers, no relationship was detected. In grasslands, the relationship was unimodal with species richness decline starting at much lower productivity levels than in more productive temperate grasslands. Potential causes for this decline are either limitation of local species richness by the species pool, which contains few species adapted to more productive habitats, or competitive exclusion, which can become an important control of species richness under lower levels of productivity than is the case in temperate grasslands.


Global Ecology and Biogeography | 2007

Plant species richness in continental southern Siberia: effects of pH and climate in the context of the species pool hypothesis

Milan Chytrý; Jiří Danihelka; Nikolai Ermakov; Michal Hájek; Petra Hájková; Martin Kočí; Svatava Kubešová; Pavel Lustyk; Zdenka Otýpková; Denis Popov; Jan Roleěek; Marcela Řezníčková; Petr Šmarda; Milan Valachovič


Journal of Biogeography | 2010

Habitats of relict terrestrial snails in southern Siberia: lessons for the reconstruction of palaeoenvironments of full-glacial Europe

Michal Horsák; Milan Chytrý; Beata M. Pokryszko; Jiří Danihelka; Nikolai Ermakov; Michal Hájek; Petra Hájková; Kateřina Kintrová; Martin Kočí; Svatava Kubešová; Pavel Lustyk; Zdenka Otýpková; Barbora Pelánková; Milan Valachovič


Plant Ecology | 2008

Diversity of forest vegetation across a strong gradient of climatic continentality: Western Sayan Mountains, southern Siberia

Milan Chytrý; Jiří Danihelka; Svatava Kubešová; Pavel Lustyk; Nikolai Ermakov; Michal Hájek; Petra Hájková; Martin Kočí; Zdenka Otýpková; Jan Roleček; Marcela Řezníčková; Petr Šmarda; Milan Valachovič; Denis Popov; Ivan Pišút


Journal of Biogeography | 2010

Modern analogues from the Southern Urals provide insights into biodiversity change in the early Holocene forests of Central Europe

Milan Chytrý; Jiří Danihelka; Michal Horsák; Martin Kočí; Svatava Kubešová; Zdeňka Lososová; Zdenka Otýpková; Lubomír Tichý; V. B. Martynenko; El’vira Z. Baisheva


Archive | 2001

Katalog biotopů České republiky

Milan Chytrý; Tomáš Kučera; Martin Kočí


Journal of Molluscan Studies | 2010

Snail faunas in the Southern Ural forests and their relations to vegetation: an analogue of the Early Holocene assemblages of Central Europe?

Michal Horsák; Milan Chytrý; Jiří Danihelka; Martin Kočí; Svatava Kubešová; Zdeňka Lososová; Zdenka Otýpková; Lubomír Tichý


Journal of Vegetation Science | 2012

High species richness in hemiboreal forests of the northern Russian Altai, southern Siberia

Milan Chytrý; Nikolai Ermakov; Jiří Danihelka; Michal Hájek; Petra Hájková; Michal Horsák; Martin Kočí; Svatava Kubešová; Pavel Lustyk; Zdenka Preislerová; Barbora Pelánková; Milan Valachovič; David Zelený


Global Ecology and Biogeography | 2012

The species richness–productivity relationship in the herb layer of European deciduous forests

Irena Axmanová; Milan Chytrý; David Zelený; Ching-Feng Li; Marie Vymazalová; Jiří Danihelka; Michal Horsák; Martin Kočí; Svatava Kubešová; Zdeňka Lososová; Zdenka Otýpková; Lubomír Tichý; V. B. Martynenko; El’vira Z. Baisheva; Brigitte Schuster; Martin Diekmann

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Milan Valachovič

Slovak Academy of Sciences

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