Masanori Koshino

Atom-by-atom spectroscopy at graphene edge

The properties of many nanoscale devices are sensitive to local atomic configurations, and so elemental identification and electronic state analysis at the scale of individual atoms is becoming increasingly important. For example, graphene is regarded as a promising candidate for future devices, and the electronic properties of nanodevices constructed from this material are in large part governed by the edge structures. The atomic configurations at graphene boundaries have been investigated by transmission electron microscopy and scanning tunnelling microscopy, but the electronic properties of these edge states have not yet been determined with atomic resolution. Whereas simple elemental analysis at the level of single atoms can now be achieved by means of annular dark field imaging or electron energy-loss spectroscopy, obtaining fine-structure spectroscopic information about individual light atoms such as those of carbon has been hampered by a combination of extremely weak signals and specimen damage by the electron beam. Here we overcome these difficulties to demonstrate site-specific single-atom spectroscopy at a graphene boundary, enabling direct investigation of the electronic and bonding structures of the edge atoms—in particular, discrimination of single-, double- and triple-coordinated carbon atoms is achieved with atomic resolution. By demonstrating how rich chemical information can be obtained from single atoms through energy-loss near-edge fine-structure analysis, our results should open the way to exploring the local electronic structures of various nanodevices and individual molecules.

Imaging active topological defects in carbon nanotubes.

A single-walled carbon nanotube (SWNT) is a wrapped single graphene layer, and its plastic deformation should require active topological defects--non-hexagonal carbon rings that can migrate along the nanotube wall. Although in situ transmission electron microscopy (TEM) has been used to examine the deformation of SWNTs, these studies deal only with diameter changes and no atomistic mechanism has been elucidated experimentally. Theory predicts that some topological defects can form through the Stone-Wales transformation in SWNTs under tension at 2,000 K, and could act as a dislocation core. We demonstrate here, by means of high-resolution (HR)-TEM with atomic sensitivity, the first direct imaging of pentagon-heptagon pair defects found in an SWNT that was heated at 2,273 K. Moreover, our in situ HR-TEM observation reveals an accumulation of topological defects near the kink of a deformed nanotube. This result suggests that dislocation motions or active topological defects are indeed responsible for the plastic deformation of SWNTs.

Analysis of the reactivity and selectivity of fullerene dimerization reactions at the atomic level

High-resolution transmission electron microscopy has proved useful for its ability to provide time-resolved images of small molecules and their movements. One of the next challenges in this area is to visualize chemical reactions by monitoring time-dependent changes in the atomic positions of reacting molecules. Such images may provide information that is not available with other experimental methods. Here we report a study on bimolecular reactions of fullerene and metallofullerene molecules inside carbon nanotubes as a function of electron dose. Images of how the fullerenes move during the dimerization process reveal the specific orientations in which two molecules interact, as well as how bond reorganization occurs after their initial contact. Studies on the concentration, specimen temperature, effect of catalyst and accelerating voltage indicate that the reactions can be imaged under a variety of conditions.

Heterogeneous nucleation of organic crystals mediated by single-molecule templates.

Fundamental understanding of how crystals of organic molecules nucleate on a surface remains limited because of the difficulty of probing rare events at the molecular scale. Here we show that single-molecule templates on the surface of carbon nanohorns can nucleate the crystallization of two organic compounds from a supersaturated solution by mediating the formation of disordered and mobile molecular nanoclusters on the templates. Single-molecule real-time transmission electron microscopy indicates that each nanocluster consists of a maximum of approximately 15 molecules, that there are fewer nanoclusters than crystals in solution, and that in the absence of templates physisorption, but not crystal formation, occurs. Our findings suggest that template-induced heterogeneous nucleation mechanistically resembles two-step homogeneous nucleation.

Structural and Chemical Dynamics of Pyridinic-Nitrogen Defects in Graphene

High density and controllable nitrogen doping in graphene is a critical issue to realize high performance graphene-based devices. In this paper, we demonstrate an efficient method to selectively produce graphitic-N and pyridinic-N defects in graphene by using the mixture plasma of ozone and nitrogen. The atomic structure, electronic structure, and dynamic behavior of these nitrogen defects are systematically studied at the atomic level by using a scanning transmission electron microscopy. The pyridinic-N exhibits higher chemical activity and tends to trap a series of transition metal atoms (Mg, Al, Ca, Ti, Cr, Mn, and Fe) as individual atoms.

Imaging the passage of a single hydrocarbon chain through a nanopore.

Molecular transport through nanoscale pores in films, membranes and wall structures is of fundamental importance in a number of physical, chemical and biological processes. However, there is a lack of experimental methods that can obtain information on the structure and orientation of the molecules as they pass through the pore, and their interactions with the pore during passage. Imaging with a transmission electron microscope is a powerful method for studying structural changes in single molecules as they move and for imaging molecules confined inside carbon nanotubes. Here, we report that such imaging can be used to observe the structure and orientation of a hydrocarbon chain as it passes through nanoscale defects in the walls of a single-walled carbon nanotube to the vacuum outside, and also to study the interactions between the chain and the nanopore. Based on experiments at 293 K and 4 K we conclude that the major energy source for the molecular motions observed at 4 K is the electron beam used for the imaging.

Electron Microscopic Imaging of a Single Group 8 Metal Atom Catalyzing C–C Bond Reorganization of Fullerenes

Heating a bulk sample of [60]fullerene complexes, (η(5)-C(5)H(5))MC(60)R(5) (M = Fe, Ru, R = Me, Ph), produces small hydrocarbons because of coupling of R and C(5)H(5) via C-C and C-H bond activation. Upon observation by transmission electron microscopy, these complexes, encapsulated in single-walled carbon nanotubes, underwent C-C bond reorganization reactions to form new C-C bond networks, including a structure reminiscent of [70]fullerene. Quantitative comparison of the electron dose required to effect the C-C bond reorganization of fullerenes and organofullerenes in the presence of a single atom of Ru, Fe, or Ln and in the the absence of metal atoms indicated high catalytic activity of Ru and Fe atoms, as opposed to no catalytic activity of Ln. Organic molecules such as hydrocarbons and amides as well as pristine [60]fullerene maintain their structural integrity upon irradiation by ca. 100 times higher electron dose compared to the Ru and Fe organometallics. The results not only represent a rare example of direct observation of a single-metal catalysis but also have implications for the use of single metal atom catalysis in Group 8 metal heterogeneous catalysis.

Atomic level spatial variations of energy states along graphene edges.

The local atomic bonding of carbon atoms around the edge of graphene is examined by aberration-corrected scanning transmission electron microscopy (STEM) combined with electron energy loss spectroscopy (EELS). High-resolution 2D maps of the EELS combined with atomic resolution annular dark field STEM images enables correlations between the carbon K-edge EELS and the atomic structure. We show that energy states of graphene edges vary across individual atoms along the edge according to their specific C-C bonding, as well as perpendicular to the edge. Unique spectroscopic peaks from the EELS are assigned to specific C atoms, which enables unambiguous spectroscopic fingerprint identification for the atomic structure of graphene edges with unprecedented detail.

Imaging of Conformational Changes of Biotinylated Triamide Molecules Covalently Bonded to a Carbon Nanotube Surface

A diamide molecule bearing a biotin terminus was bonded via an amide linkage to the surface of an aminated single-walled carbon nanotube and examined by a high-resolution transmission electron microscope. The still and movie images allowed us to study not only the conformation of the molecule but also its time evolution. An iterative sequence of modeling and simulation allowed us to assign one plausible conformation out of >10(8) possibilities. The images also provide direct support for the accepted wisdom that the curved regions of pristine carbon nanotubes are chemically reactive.

Stability and Spectroscopy of Single Nitrogen Dopants in Graphene at Elevated Temperatures

Single nitrogen (N) dopants in graphene are investigated using atomic-resolution scanning transmission electron microscopy (STEM) combined with electron energy loss spectroscopy (EELS). Using an in situ heating holder at 500 °C provided us with clean graphene surfaces, and we demonstrate that isolated N substitutional atoms remain localized and stable in the graphene lattice even during local sp(2) bond reconstruction. The high stability of isolated N dopants enabled us to acquire 2D EELS maps with simultaneous ADF-STEM images to map out the local bonding variations. We show that a substitutional N dopant causes changes in the EELS of the carbon (C) atoms it is directly bonded to. An upshift in the π* peak of the C K-edge EELS of ∼0.5 eV is resolved and supported by density functional theory simulations.