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Featured researches published by Matthew H. Shirley.


Proceedings of the Royal Society of London B: Biological Sciences | 2013

Rigorous approaches to species delimitation have significant implications for African crocodilian systematics and conservation

Matthew H. Shirley; Kent A. Vliet; Amanda N. Carr; James D. Austin

Accurate species delimitation is a central assumption of biology that, in groups such as the Crocodylia, is often hindered by highly conserved morphology and frequent introgression. In Africa, crocodilian systematics has been hampered by complex regional biogeography and confounded taxonomic history. We used rigorous molecular and morphological species delimitation methods to test the hypothesis that the slender-snouted crocodile (Mecistops cataphractus) is composed of multiple species corresponding to the Congolian and Guinean biogeographic zones. Speciation probability was assessed by using 11 mitochondrial and nuclear genes, and cranial morphology for over 100 specimens, representing the full geographical extent of the species distribution. Molecular Bayesian and phylogenetic species delimitation showed unanimous support for two Mecistops species isolated to the Upper Guinean and Congo (including Lower Guinean) biomes that were supported by 13 cranial characters capable of unambiguously diagnosing each species. Fossil-calibrated phylogenetic reconstruction estimated that the species split ± 6.5–7.5 Ma, which is congruent with intraspecies divergence within the sympatric crocodile genus Osteolaemus and the formation of the Cameroon Volcanic Line. Our results underscore the necessity of comprehensive phylogeographic analyses within currently recognized taxa to detect cryptic species within the Crocodylia. We recommend that the community of crocodilian researchers reconsider the conceptualization of crocodilian species especially in the light of the conservation ramifications for this economically and ecologically important group.


PeerJ | 2016

Fine scale patterns of genetic partitioning in the rediscovered African crocodile, Crocodylus suchus (Saint-Hilaire 1807).

Seth W. Cunningham; Matthew H. Shirley; Evon R. Hekkala

Landscape heterogeneity, phylogenetic history, and stochasticity all influence patterns of geneflow and connectivity in wild vertebrates. Fine-scale patterns of genetic partitioning may be particularly important for the sustainable management of widespread species in trade, such as crocodiles. We examined genetic variation within the rediscovered African crocodile, Crocodylus suchus, across its distribution in West and Central Africa. We genotyped 109 individuals at nine microsatellite loci from 16 sampling localities and used three Bayesian clustering techniques and an analysis of contemporary gene flow to identify population structure across the landscape. We identified up to eight genetic clusters that largely correspond to populations isolated in coastal wetland systems and across large distances. Crocodile population clusters from the interior were readily distinguished from coastal areas, which were further subdivided by distance and drainage basin. Migration analyses indicated contemporary migration only between closely positioned coastal populations. These findings indicate high levels of population structure throughout the range of C. suchus and we use our results to suggest a role for molecular tools in identifying crocodile conservation units for this species. Further research, including additional sampling throughout the Congo and Niger drainages, would clarify both the landscape connectivity and management of this species.


Ostrich | 2007

Notes on breeding and conservation of the Grey-necked Picathartes Picathartes oreas in mainland Equatorial Guinea

B Britten Harter; Matthew H. Shirley

B Britten Harter 1, * and Matthew H Shirley 3 1 Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut 06520, USA 2 Current address: Department of Zoology, Z320 Duff Roblin Building, Faculty of Science, University of Manitoba, Winnipeg, MB R3T 2H2, Canada 3 Current address: Department of Wildlife Ecology and Conservation, University of Florida, 110 Newins-Zeigler Hall, Gainesville, Fl 32611-0430, USA * Corresponding author, e-mail: [email protected]


Molecular Ecology | 2011

An ancient icon reveals new mysteries: mummy DNA resurrects a cryptic species within the Nile crocodile

Evon R. Hekkala; Matthew H. Shirley; George Amato; James D. Austin; Suellen J. Charter; John B. Thorbjarnarson; Kent A. Vliet; Marlys L. Houck; Rob DeSalle; Michael J. Blum


Oryx | 2009

Conservation status of crocodiles in Ghana and Côte-d'Ivoire, West Africa.

Matthew H. Shirley; William Oduro; Hilaire Yaokokore Beibro


Palaeogeography, Palaeoclimatology, Palaeoecology | 2008

Phosphate–Oxygen Isotopes from Marine Turtle Bones: Ecologic and Paleoclimatic Applications

Alan B. Coulson; Matthew J. Kohn; Matthew H. Shirley; Walter G. Joyce; Reese E. Barrick


Animal Conservation | 2015

Genetic barcoding facilitates captive and wild management of three cryptic African crocodile species complexes

Matthew H. Shirley; V. L. Villanova; Kent A. Vliet; James D. Austin


Journal of Wildlife Management | 2012

A sampling design and model for estimating abundance of Nile crocodiles while accounting for heterogeneity of detectability of multiple observers

Matthew H. Shirley; Robert M. Dorazio; Ekramy Abassery; Amr Abd Elhady; Mohammed Saad Mekki; Hosni Helmy Asran


African Journal of Ecology | 2017

Diet and body condition of cave‐dwelling dwarf crocodiles (Osteolaemus tetraspis, Cope 1861) in Gabon

Matthew H. Shirley; Brittany F. Burtner; Richard Oslisly; David Sebag; Olivier Testa


Zootaxa | 2018

Systematic revision of the living African Slender-snouted Crocodiles ( Mecistops Gray, 1844)

Matthew H. Shirley; Amanda N. Carr; Jennifer H. Nestler; Kent A. Vliet; Christopher A. Brochu

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George Amato

American Museum of Natural History

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Marlys L. Houck

Zoological Society of San Diego

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