Matthew I. Palmer

Functional and phylogenetic diversity as predictors of biodiversity–ecosystem-function relationships

How closely does variability in ecologically important traits reflect evolutionary divergence? The use of phylogenetic diversity (PD) to predict biodiversity effects on ecosystem functioning, and more generally the use of phylogenetic information in community ecology, depends in part on the answer to this question. However, comparisons of the predictive power of phylogenetic diversity and functional diversity (FD) have not been conducted across a range of experiments. To address how phylogenetic diversity and functional trait variation control biodiversity effects on biomass production, we summarized the results of 29 grassland plant experiments where both the phylogeny of plant species used in the experiments is well described and where extensive trait data are available. Functional trait variation was only partially related to phylogenetic distances between species, and the resulting FD values therefore correlate only partially with PD. Despite these differences, FD and PD predicted biodiversity effects across all experiments with similar strength, including in subsets that excluded plots with legumes and that focused on fertilization experiments. Two- and three-trait combinations of the five traits used here (leaf nitrogen percentage, height, specific root length, leaf mass per unit area, and nitrogen fixation) resulted in the FD values with the greatest predictive power. Both PD and FD can be valuable predictors of the effect of biodiversity on ecosystem functioning, which suggests that a focus on both community trait diversity and evolutionary history can improve understanding of the consequences of biodiversity loss.

Digging the New York City Skyline: soil fungal communities in green roofs and city parks.

In urban environments, green roofs provide a number of benefits, including decreased urban heat island effects and reduced energy costs for buildings. However, little research has been done on the non-plant biota associated with green roofs, which likely affect their functionality. For the current study, we evaluated whether or not green roofs planted with two native plant communities in New York City functioned as habitats for soil fungal communities, and compared fungal communities in green roof growing media to soil microbial composition in five city parks, including Central Park and the High Line. Ten replicate roofs were sampled one year after planting; three of these roofs were more intensively sampled and compared to nearby city parks. Using Illumina sequencing of the fungal ITS region we found that green roofs supported a diverse fungal community, with numerous taxa belonging to fungal groups capable of surviving in disturbed and polluted habitats. Across roofs, there was significant biogeographical clustering of fungal communities, indicating that community assembly of roof microbes across the greater New York City area is locally variable. Green roof fungal communities were compositionally distinct from city parks and only 54% of the green roof taxa were also found in the park soils. Phospholipid fatty acid analysis revealed that park soils had greater microbial biomass and higher bacterial to fungal ratios than green roof substrates. City park soils were also more enriched with heavy metals, had lower pH, and lower quantities of total bases (Ca, K, and Mg) compared to green roof substrates. While fungal communities were compositionally distinct across green roofs, they did not differentiate by plant community. Together, these results suggest that fungi living in the growing medium of green roofs may be an underestimated component of these biotic systems functioning to support some of the valued ecological services of green roofs.

The importance of rare species: a trait-based assessment of rare species contributions to functional diversity and possible ecosystem function in tall-grass prairies

The majority of species in ecosystems are rare, but the ecosystem consequences of losing rare species are poorly known. To understand how rare species may influence ecosystem functioning, this study quantifies the contribution of species based on their relative level of rarity to community functional diversity using a trait-based approach. Given that rarity can be defined in several different ways, we use four different definitions of rarity: abundance (mean and maximum), geographic range, and habitat specificity. We find that rarer species contribute to functional diversity when rarity is defined by maximum abundance, geographic range, and habitat specificity. However, rarer species are functionally redundant when rarity is defined by mean abundance. Furthermore, when using abundance-weighted analyses, we find that rare species typically contribute significantly less to functional diversity than common species due to their low abundances. These results suggest that rare species have the potential to play an important role in ecosystem functioning, either by offering novel contributions to functional diversity or via functional redundancy depending on how rare species are defined. Yet, these contributions are likely to be greatest if the abundance of rare species increases due to environmental change. We argue that given the paucity of data on rare species, understanding the contribution of rare species to community functional diversity is an important first step to understanding the potential role of rare species in ecosystem functioning.

Biodiversity as a multidimensional construct: a review, framework and case study of herbivory's impact on plant biodiversity

Biodiversity is inherently multidimensional, encompassing taxonomic, functional, phylogenetic, genetic, landscape and many other elements of variability of life on the Earth. However, this fundamental principle of multidimensionality is rarely applied in research aimed at understanding biodiversitys value to ecosystem functions and the services they provide. This oversight means that our current understanding of the ecological and environmental consequences of biodiversity loss is limited primarily to what unidimensional studies have revealed. To address this issue, we review the literature, develop a conceptual framework for multidimensional biodiversity research based on this review and provide a case study to explore the framework. Our case study specifically examines how herbivory by whitetail deer (Odocoileus virginianus) alters the multidimensional influence of biodiversity on understory plant cover at Black Rock Forest, New York. Using three biodiversity dimensions (taxonomic, functional and phylogenetic diversity) to explore our framework, we found that herbivory alters biodiversitys multidimensional influence on plant cover; an effect not observable through a unidimensional approach. Although our review, framework and case study illustrate the advantages of multidimensional over unidimensional approaches, they also illustrate the statistical and empirical challenges such work entails. Meeting these challenges, however, where data and resources permit, will be important if we are to better understand and manage the consequences we face as biodiversity continues to decline in the foreseeable future.

Bacteria and Fungi in Green Roof Ecosystems

Green roofs are one way by which cities are attempting to alleviate some of the problems associated with impervious surfaces in urban environments such as the urban heat island effect and stormwater runoff. In addition, green roofs provide a number of ecosystem services such as the provision of habitats for organisms residing in and migrating through the city that have only recently been studied and documented. Microorganisms such as fungi and bacteria have been found to be diverse and abundant components of green roof growing substrate and may contribute to some of the other benefits green roofs provide such as the removal of organic pollutants from precipitation. Here, we review several functional groups of microbes that may be useful for understanding in terms of green roof design and maintenance: mycorrhizal fungi, decomposer fungi, endophytes, N-fixing bacteria, and pathogens. These microbes interact with plant species and growing substrate in complex ways that require further investigation. The ecology of these microbial groups should also be considered, including their dispersal rates and how they respond to regional differences such as climate and seasonality. We highlight several research priorities for this area of work, which may ultimately facilitate greater functionality in green roof systems.

Foliar nitrogen characteristics of four tree species planted in New York City forest restoration sites.

Urban forests provide important environmental benefits, leading many municipal governments to initiate citywide tree plantings. However, nutrient cycling in urban ecosystems is difficult to predict, and nitrogen (N) use in urban trees may be quite different from use in rural forests. To gain insight into these biogeochemical and physiological processes, we compared foliar N characteristics of several common northeastern deciduous tree species across four newly planted New York City afforestation sites as well as at the Black Rock Forest (BRF), a rural oak-dominated forest in the Hudson Highlands, New York. Foliage sampled at BRF was consistently depleted in 15N compared to urban foliage, and Amelanchier canadensis, Nyssa sylvatica, Prunus serotina, and Quercus rubra showed significant variation in foliar nitrogen isotope signatures (δ15N) among the four urban sites. A. canadensis and P. serotina showed significantly greater ability to assimilate nitrate at BRF compared to urban sites, as measured through nitrate reductase activity (NRA). There were no significant differences in NRA among tree species growing at the four urban sites. Only P. serotina and N. sylvatica showed significant variation in foliar N concentrations (%N) both among urban sites and compared to BRF. The isotopic and %N data suggest greater N availability but less available nitrate at the newly planted urban sites compared to BRF, possibly due to different anthropogenic inputs or higher rates of nitrification and nitrate leaching at the recently planted urban sites compared to likely lower rates of N cycling in the intact rural forest. In addition, the tree species varied in their response to N availability at the urban sites, with potential implications for growth and survival. Understanding N cycling in urban systems and the associated physiological changes in vegetation is critical to a comprehensive evaluation of urban forest restoration, and may have implications for carbon sequestration and water quality issues associated with nitrate export, two important areas of management concern.

Japanese Knotweed Management in the Riparian Zone of the Bronx River

prairie plantings, the lack of knowledge of how a species will interact with the local conditions (Gibson et al. 2016) and other species may lead to unintended consequences (Johnson et al. 2017). Even in its traditional range, restoration practitioners are now advising against using R. pinnata in restorations because of its competitive and easy to establish nature (Jessica Peterson, Minnesota Department of Natural Resources, pers. comm.). Therefore, the demonstrated ability of R. pinnata to be self-sustaining combined with its aggressive nature and the possibility of unintended consequences leads us to caution restoration practitioners on using this species outside of its traditional range.