Matthew L. Julius

Antidepressants at environmentally relevant concentrations affect predator avoidance behavior of larval fathead minnows (Pimephales promelas).

The effects of embryonic and larval exposure to environmentally relevant (ng/L) concentrations of common antidepressants, fluoxetine, sertraline, venlafaxine, and bupropion (singularly and in mixture) on C-start escape behavior were evaluated in fathead minnows (Pimephales promelas). Embryos (postfertilization until hatching) were exposed for 5 d and, after hatching, were allowed to grow in control well water until 12 d old. Similarly, posthatch fathead minnows were exposed for 12 d to these compounds. High-speed (1,000 frames/s) video recordings of escape behavior were collected and transferred to National Institutes of Health Image for frame-by-frame analysis of latency periods, escape velocities, and total escape response (combination of latency period and escape velocity). When tested 12 d posthatch, fluoxetine and venlafaxine adversely affected C-start performance of larvae exposed as embryos. Conversely, larvae exposed for 12 d posthatch did not exhibit altered escape responses when exposed to fluoxetine but were affected by venlafaxine and bupropion exposure. Mixtures of these four antidepressant pharmaceuticals slowed predator avoidance behaviors in larval fathead minnows regardless of the exposure window. The direct impact of reduced C-start performance on survival and, ultimately, reproductive fitness provides an avenue to assess the ecological relevance of exposure in an assay of relatively short duration.

Predator avoidance performance of larval fathead minnows (Pimephales promelas) following short-term exposure to estrogen mixtures

Aquatic organisms exposed to endocrine disrupting compounds (EDCs) at early life-stages may have reduced reproductive fitness via disruption of reproductive and non-reproductive behavioral and physiological pathways. Survival to reproductive age relies upon optimal non-reproductive trait expression, such as adequate predator avoidance responses, which may be impacted through EDC exposure. During a predator-prey confrontation, larval fish use an innate C-start escape behavior to rapidly move away from an approaching threat. We tested the hypotheses that (1) larval fathead minnows exposed to estrogens, a primary class of EDCs, singularly or in mixture, suffer a reduced ability to perform an innate C-start behavior when faced with a threat stimulus; (2) additive effects will cause greater reductions in C-start behavior; and (3) effects will differ among developmental stages. In this study, embryos (post-fertilization until hatching) were exposed for 5 days to environmentally relevant concentrations of estrone (E1), 17beta-estradiol (E2), and 17alpha-ethinylestradiol (EE2) singularly and in mixture. Exposed embryos were allowed to hatch and grow in control well water until 12 days old. Similarly, post-hatch fathead minnows were exposed for 12 days to these compounds. High-speed (1000frames/s) video recordings of escape behavior were collected and transferred to National Institutes of Health Image for frame-by-frame analysis of latency period, escape velocity, and total escape response (combination of latency period and escape velocity). When tested 12 days post-hatch, only E1 adversely affected C-start performance of larvae exposed as embryos. Conversely, larvae exposed for 12 days post-hatch did not exhibit altered escape responses when exposed to E1, while adverse responses were seen in E2 and the estrogen mixture. Ethinylestradiol exposure did not elicit changes in escape behaviors at either developmental stage. The direct impact of reduced C-start performance on survival, and ultimately, reproductive fitness provides an avenue to assess the ecological relevance of exposure in an assay of relatively short duration.

The model marine diatom Thalassiosira pseudonana likely descended from a freshwater ancestor in the genus Cyclotella

BackgroundPublication of the first diatom genome, that of Thalassiosira pseudonana, established it as a model species for experimental and genomic studies of diatoms. Virtually every ensuing study has treated T. pseudonana as a marine diatom, with genomic and experimental data valued for their insights into the ecology and evolution of diatoms in the worlds oceans.ResultsThe natural distribution of T. pseudonana spans both marine and fresh waters, and phylogenetic analyses of morphological and molecular datasets show that, 1) T. pseudonana marks an early divergence in a major freshwater radiation by diatoms, and 2) as a species, T. pseudonana is likely ancestrally freshwater. Marine strains therefore represent recent recolonizations of higher salinity habitats. In addition, the combination of a relatively nondescript form and a convoluted taxonomic history has introduced some confusion about the identity of T. pseudonana and, by extension, its phylogeny and ecology. We resolve these issues and use phylogenetic criteria to show that T. pseudonana is more appropriately classified by its original name, Cyclotella nana. Cyclotella contains a mix of marine and freshwater species and so more accurately conveys the complexities of the phylogenetic and natural histories of T. pseudonana.ConclusionsThe multitude of physical barriers that likely must be overcome for diatoms to successfully colonize freshwaters suggests that the physiological traits of T. pseudonana, and the genes underlying those traits, might differ from those of strictly marine diatoms. The freshwater ancestry of T. pseudonana might therefore confound generalizations about the physiological and metabolic properties of marine diatoms. The freshwater component of T. pseudonanas history merits careful consideration in the interpretation of experimental data collected for this important model species.

Next-generation phenomics for the Tree of Life

The phenotype represents a critical interface between the genome and the environment in which organisms live and evolve. Phenotypic characters also are a rich source of biodiversity data for tree building, and they enable scientists to reconstruct the evolutionary history of organisms, including most fossil taxa, for which genetic data are unavailable. Therefore, phenotypic data are necessary for building a comprehensive Tree of Life. In contrast to recent advances in molecular sequencing, which has become faster and cheaper through recent technological advances, phenotypic data collection remains often prohibitively slow and expensive. The next-generation phenomics project is a collaborative, multidisciplinary effort to leverage advances in image analysis, crowdsourcing, and natural language processing to develop and implement novel approaches for discovering and scoring the phenome, the collection of phentotypic characters for a species. This research represents a new approach to data collection that has the potential to transform phylogenetics research and to enable rapid advances in constructing the Tree of Life. Our goal is to assemble large phenomic datasets built using new methods and to provide the public and scientific community with tools for phenomic data assembly that will enable rapid and automated study of phenotypes across the Tree of Life.

The survival of Sicyopterus stimpsoni, an endemic amphidromous Hawaiian gobiid fish, relies on the hydrological cycles of streams: evidence from changes in algal composition of diet through growth stages fish

Gut contents of larval, juvenile, and adult specimens of the Hawaiian gobiid fish Sicyopterus stimpsoni were examined to catalog the algal flora ingested by this species. The developmental stages of S. stimpsoni examined represented hallmark points in the fish’s life cycle corresponding with major migratory and metamorphic transitions. The algal flora was dominated by diatom species and shifted from taxa representative of a marine, planktonic community in larval fish to a freshwater, benthic community in juvenile and adult fish. This change in diet corresponds with the migration of larval fish to freshwater streams just prior to juvenile development in which rapid modification in mouth anatomy makes ingestion of planktonic algal species difficult. Benthic diatoms from juvenile and adult fish assemblages represented multiple genera that live in a narrow set of environmental conditions. These algae grow during a specific period in the development of the benthic algal community in Hawaiian streams. This suggests a highly specialized dietary behavior that depends heavily on continually restarting the benthic algal successional pattern, which appears to be regulated by the hydrological cycles of streams on the island.

Cladistic analysis of plicated Thalassiosira (Bacillariophyceae)

Abstract Nineteen Thalassiosira species informally referred to as the plicated Thalassiosira were examined in a cladistic analysis. The species range in age from 17 Ma to modern, representing the earliest known members of the group and its most recent members. Two most parsimonious cladograms were discovered, generally agreeing with the occurrence of species in the fossil record. Character distributions support all described species in the context of the phylogenetic species definition, and important features diagnosing these species are presented. The groups fossil record and use of its species as biostratigraphic and ecological indicators are discussed. Results of the cladogram are also used to detail potential nomenclatural modifications of both Thalassiosira itself and within the plicated Thalassiosira, and an outline of this future research is presented.

The Diatoms: The diatoms: a primer

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ABSENCE OF EVIDENCE IS NOT EVIDENCE OF ABSENCE: IS STEPHANODISCUS BINDERANUS (BACILLARIOPHYCEAE) AN EXOTIC SPECIES IN THE GREAT LAKES REGION?(1).

The eutrophic, freshwater diatom species Stephanodiscus binderanus (Kütz.) Willi Krieg. has long been considered a nuisance exotic alga introduced from Eurasia to the Great Lakes in North America in the early to mid‐20th century. However, our paleolimnological data from Lake Simcoe, Ontario, provide unequivocal evidence that this taxon has been present in the Great Lakes region since at least the late 17th century. Subfossil diatom valves were identified and enumerated at high resolution in 210Pb‐dated sediment cores from four sites across the lake. The taxonomic identification of S. binderanus was confirmed using SEM. The historical presence of this species in Lake Simcoe indicates somewhat naturally productive conditions and also refutes the idea that S. binderanus is a nonindigenous species to North America. This study underscores the caution that should be applied to questions of diatom (and protistan) distributions in time and space. Clearly, the absence of evidence is not evidence of absence.

Centric and Araphid Diatoms

The diatoms are a successful group of eukaryotic, photosynthetic microbes that occur in nearly every place there is or has been; that place being water. With over 64,000 named entities, they are one of the most diverse groups of algae. The groups of freshwater diatoms, known as “centric” and “araphid”, occur in a wide variety of lotic and lentic systems, and are especially plentiful in plankton communities where they are the favored food source by many primary consumers. This chapter offers light and scanning electron microscope observations on the morphology of the siliceous cell walls of the commonly encountered genera found in the freshwaters of North America. A total of 45 genera are treated (27 centrics and 18 araphids). For each genus we provide original figures, descriptions, and comments on preferred ecological habitats.

Stephanodiscus kusuensis, sp. nov a new Pleistocene diatom from Southern Japan

A new fossil diatom, Stephanodiscus kusuensis sp. nov., is described from a diatomite deposit from the Kusu Basin, Oita Prefecture Japan. Radiometric age estimates of the strata in which the taxon occurs are 400–500 kyr. The new species is distinct from all other known species of Stephanodiscus because it possesses a highly pronounced double concentric undulation and two distinct arrangements of central strutted processes. Cladistic analysis is used to identify the phylogenetic position of this taxon with respect to other Stephanodiscus species.