Matthew L. Keefer

Behavioral Thermoregulation and Slowed Migration by Adult Fall Chinook Salmon in Response to High Columbia River Water Temperatures

Abstract The relationships between lower Columbia River water temperatures and migration rates, temporary tributary use, and run timing of adult fall Chinook salmon Oncorhynchus tshawytscha were studied using historical counts at dams and recently collected radiotelemetry data. The results from more than 2,100 upriver bright fall Chinook salmon radio-tagged over 6 years (1998, 2000–2004) showed that mean and median migration rates through the lower Columbia River slowed significantly when water temperatures were above about 20°C. Slowed migration was strongly associated with temporary use of tributaries, which averaged 2–7°C cooler than the main stem. The proportion of radio-tagged salmon using tributaries increased exponentially as Columbia River temperatures rose within the year, and use was highest in the warmest years. The historical passage data showed significant shifts in fall Chinook salmon run timing distributions concomitant with Columbia River warming and consistent with increasing use of therm...

Hydrosystem, Dam, and Reservoir Passage Rates of Adult Chinook Salmon and Steelhead in the Columbia and Snake Rivers

Abstract We assessed upstream migration rates of more than 12,000 radio-tagged adult Chinook salmon Oncorhynchus tshawytscha and steelhead O. mykiss past a series of dams and reservoirs on the Columbia and Snake rivers. Most fish passed each dam in less than 2 d. Migration behavior in reservoirs and through multiple dam–reservoir reaches varied within and between years and between species. Within years, spring–summer Chinook salmon migrated more rapidly as water temperature and date of migration increased; between years, spring–summer Chinook salmon migrated fastest in low-discharge years. Steelhead migrations slowed dramatically when summer water temperatures peaked within each year, then increased as rivers cooled in fall. Mean summer temperatures explained more between-year variation in steelhead passage rates than did differences in discharge. Fall Chinook salmon migration rates also slowed during periods of warm water. Protracted passage times within the hydrosystem were most likely for fish from all...

Homing and straying by anadromous salmonids: a review of mechanisms and rates

There is a long research history addressing olfactory imprinting, natal homing, and non-natal straying by anadromous salmon and trout (Salmonidae). In undisturbed populations, adult straying is a fundamental component of metapopulation biology, facilitating genetic resilience, demographic stability, recolonization, and range expansion into unexploited habitats. Unfortunately, salmonid hatcheries and other human actions worldwide have affected straying in ways that can negatively affect wild populations through competitive interactions, reduced productivity and resiliency, hybridization and domestication effects, and outbreeding depression. Reduced adult straying is therefore an objective for many managed populations. Currently, there is considerable uncertainty about the range of ‘natural’ stray rates and about which mechanisms precipitate straying in either wild or human-influenced fish. Research in several disciplines indicates that adult straying is affected by endocrine physiology and neurological processes in juveniles, incomplete or interrupted imprinting during rearing and emigration, and by complex interactions among adult maturation processes, reproductive behaviors, olfactory memory, environmental conditions during migration, and senescence physiology. Reported salmonid stray rates indicate that the behavior varies among species, among life-history types, and among populations within species. Most strays enter sites near natal areas, but long-distance straying also occurs, especially in hatchery populations that were outplanted or transported as juveniles. A majority of past studies has estimated straying as demographic losses from donor populations, but some have estimated straying into recipient populations. Most recipient-based estimates have substantiated concerns that wild populations are vulnerable to swamping by abundant hatchery and farm-raised strays.

Fallback, Reascension, and Adjusted Fishway Escapement Estimates for Adult Chinook Salmon and Steelhead at Columbia and Snake River Dams

Abstract During their upstream spawning migration in the Columbia River basin, some adult salmonids Oncorhynchus spp. ascend and then fall back over main-stem hydroelectric dams. Fallback can result in fish injury or death, migration delays, and biases in fishway counts, the primary index for escapement and the basis for production estimates and harvest quotas. We used radiotelemetry to calculate fallback percentages and rates, reascension percentages, biases in fishway escapement estimates due to fallback, and occurrence of behaviorally motivated fallback (correcting overshoot of natal sites) by spring–summer and fall Chinook salmon O. tshawytscha and steelhead O. mykiss. The study area included eight Columbia River and Snake River dams evaluated from 1996 to 2001. For all years combined, about 22% of spring–summer Chinook salmon, 15% of fall Chinook salmon, and 21% of steelhead fell back at least once at a dam. Fallback percentages for spring–summer Chinook salmon were generally highest at Bonneville an...

Regurgitation Rates of Intragastric Radio Transmitters by Adult Chinook Salmon and Steelhead during Upstream Migration in the Columbia and Snake Rivers

Abstract Regurgitation rates for radio tags gastrically implanted into adult salmon Oncorhynchus spp. and steelhead O. mykiss are difficult to estimate in the wild because most fish are never recaptured to allow inspection of secondary tags. During 1996–2000, 9,006 Chinook salmon O. tshawytscha and steelhead with both radio tags and secondary tags were released near Bonneville Dam on the Columbia River (Washington–Oregon), and 1,764 fish were recaptured in mid-migration 460 km upstream on the lower Snake River. Minimum annual regurgitation rates ranged from 0.4% to 10.9% for spring–summer Chinook salmon (pooled rate = 3.0%; n = 838), from 3.5% to 4.3% for steelhead (pooled rate = 4.0%; n = 881), and from 0% to 5.6% for fall Chinook salmon (pooled rate = 2.2%; n = 45). Fish that lost transmitters retained them a median of 7 d (average = 14.1 d) before regurgitation, and a majority of losses occurred in the lower Columbia River. Transmitter retention was improved by placing rubber bands or a ring of surgica...

Stock-Specific Migration Timing of Adult Spring–Summer Chinook Salmon in the Columbia River Basin

Abstract An understanding of the migration timing patterns of Pacific salmon Oncorhynchus spp. and steelhead O. mykiss is important for managing complex mixed-stock fisheries and preserving genetic and life history diversity. We examined adult return timing for 3,317 radio-tagged fish from 38 stocks of Columbia River basin spring–summer Chinook salmon O. tshawytscha over 5 years. Stock composition varied widely within and between years depending on the strength of influential populations. Most individual stocks migrated at similar times each year relative to overall runs, supporting the hypotheses that run timing is predictable, is at least partially due to genetic adaptation, and can be used to differentiate between some conspecific populations. Arrival timing of both aggregated radio-tagged stocks and annual runs was strongly correlated with river discharge; stocks arrived earlier at Bonneville Dam and at upstream dams in years with low discharge. Migration timing analyses identified many between-stock ...

Effects of Body Size and River Environment on the Upstream Migration of Adult Pacific Lampreys

Abstract Dams in the Columbia River basin present significant obstacles to declining populations of anadromous Pacific lampreys Lampetra tridentata. Mitigation efforts have focused on fine-scale improvements in passage at individual dams, but there is an increasing need for basinwide estimates of survival and escapement. We developed a half-duplex passive integrated transponder (PIT) tag monitoring array at five Columbia and Snake River dams to evaluate adult lamprey migrations. We tagged 3,598 lampreys over 3 years and calculated the rates of main-stem escapement through 15 river reaches. From these data, we assessed the relative effects of lamprey size, river discharge, water temperature, and migration timing on upstream passage. The results indicated high attrition as lampreys progressed upstream. In each year, about one-half of the fish passed one dam, 28–33% passed two dams, 17–19% passed three dams, 4–5% passed four dams, and about 1% passed the first dam on the Snake River (five dams and >300 km up...

Iteroparity in Columbia River summer-run steelhead (Oncorhynchus mykiss) : implications for conservation

We used ultrasound imaging and passive integrated transponder (PIT)-tagging programs to assess maturation status and iteroparity patterns in summer-run steelhead (anadromous rainbow trout, Oncorhynchus mykiss) of the interior Columbia River Basin (Pacific Northwest, USA). Postspawn kelts examined in downstream fish bypass systems at Columbia River and Snake River dams were disproportionately female (>80%) and majorities were of wild origin, unlike prespawn steelhead at these sites. Annual repeat migration estimates varied from 2.9% to 9.0% for kelts tagged at lower Columbia River dams (n = 2542) and from 0.5% to 1.2% for Snake River kelts (n = 3762). Among-site differences reflected greater outmigration distance and additional dam passage hazards for Snake River kelts. There was also strong evidence for condition-dependent mortality, with returns an order of magnitude higher for good- versus poor-condition kelts. Disproportionately more females and wild fish also returned, providing potentially valuable g...

TRANSPORTING JUVENILE SALMONIDS AROUND DAMS IMPAIRS ADULT MIGRATION

Mitigation and ecosystem-restoration efforts may have unintended consequences on both target and nontarget populations. Important effects can be displaced in space and time, making them difficult to detect without monitoring at appropriate scales. Here, we examined the effects of a mitigation program for juvenile salmonids on subsequent adult migration behaviors and survival. Juvenile chinook salmon (Oncorhynchus tshawytscha) and steelhead (O. mykiss) were collected and uniquely tagged with passive integrated transponder (PIT) tags at Lower Granite Dam (Washington State, USA) on the Snake River and were then either transported downstream in barges in an effort to reduce out-migration mortality or returned to the river as a control group. Returning adults were collected and radio-tagged at Bonneville Dam (Washington-Oregon, USA) on the Columbia River 1-3 years later and then monitored during approximately 460 km of their homing migrations. The proportion of adults successfully homing was significantly lower, and unaccounted loss and permanent straying into non-natal rivers was higher, for barged fish of both species. On average, barged fish homed to Lower Granite Dam at rates about 10% lower than for in-river migrants. Barged fish were also 1.7-3.4 times more likely than in-river fish to fall back downstream past dams as adults, a behavior strongly associated with lower survival. These results suggest that juvenile transport impaired adult orientation or homing abilities, perhaps by disrupting sequential imprinting processes during juvenile out-migration. While juvenile transportation has clear short-term juvenile-survival benefits, the delayed effects that manifest in adult stages illustrate the need to assess mitigation success throughout the life cycle of target organisms, i.e., the use of fitness-based measures. In the case of Snake River salmonids listed under the Endangered Species Act, the increased straying and potential associated genetic and demographic effects may represent significant risks to successful recovery for both target and nontarget populations.

Testing Adult Pacific Lamprey Performance at Structural Challenges in Fishways

Abstract Adult Pacific lampreys Lampetra tridentata migrate through areas of difficult passage and high water velocity by attaching their oral discs to substrate and then releasing and bursting upstream. In fishways at dams, this burst-and-attach behavior can be ineffective, particularly where suitable attachment surfaces are unavailable. We used an experimental fishway to test performance of adult Pacific lampreys when confronted with a series of structural challenges. These included vertical steps near fishway weir orifices, squared versus rounded orifice entrances, and floor-mounted metal grates. All experimental challenges simulated common existing structures in weir-and-orifice fishways at Columbia and Snake River dams. Most experiments were paired with field evaluations of radio-tagged Pacific lampreys or video observations of untagged individuals in situ. Field and experimental results consistently indicated that the structural challenges reduced passage efficiency and lengthened passage times. Imp...