Tami S. Clabough

Movement of Radio-Tagged Adult Pacific Lampreys during a Large-Scale Fishway Velocity Experiment

Abstract Optimization of fishways to pass multiple species is challenging because life history, swimming ability, and behavior often differ among species. For example, high fishway water velocities designed to attract adult Pacific salmon Oncorhynchus spp. at Columbia River dams inhibit fishway entrance and passage success of adult Pacific lampreys Lampetra tridentata, a species of conservation concern. We tested whether reduced water velocities (∼1.2 m/s, 0.15 m of head) at Bonneville Dam fishway openings improved entrance efficiency and other passage metrics for radio-tagged Pacific lampreys compared with control velocities (>1.98 m/s, 0.46 m of head) and near-zero (“standby”) velocities. Lamprey entrance efficiencies were significantly higher in the reduced-velocity treatment (26–29%) than in the control (13–20%) or standby (5–9%) treatment. In some years, significantly more Pacific lampreys passed through fishway collection channels and transition pools and reached the fish ladder during reduced-veloc...

Migration depths of adult spring and summer Chinook salmon in the lower Columbia and Snake Rivers in relation to dissolved gas supersaturation

Abstract High spill volume at dams can create supersaturated dissolved gas conditions that may have negative effects on fish. Water spilling over Columbia and Snake River dams during the spring and summer creates plumes with high dissolved gas that extend downstream of dam spillways and throughout reservoirs and creates gas-supersaturated conditions throughout the water column. During the spring and summer of 2000, 228 adult Chinook salmon Oncorhynchus tshawytscha were tagged at Bonneville Dam with archival radio data storage transmitters (RDSTs) that recorded depth and water temperature as the fish migrated through dams and reservoirs of the lower Columbia and Snake rivers. Swimming depths from 131 of the 228 adult spring and summer Chinook salmon tagged with RDSTs were used to estimate the potential for gas bubble formation given in-river dissolved gas concentrations and hydrostatic compensation. We found that adult spring and summer Chinook salmon spent a majority of the time at depths that would have ...

Thermal exposure of adult Chinook salmon in the Willamette River basin.

Radiotelemetry and archival temperature loggers were used to reconstruct the thermal experience of adult spring Chinook salmon (Oncorhynchus tshawytscha) in the highly regulated Willamette River system in Oregon. The study population is threatened and recovery efforts have been hampered by episodically high prespawn mortality that is likely temperature mediated. Over three years, 310 salmon were released with thermal loggers and 68 were recovered in spawning tributaries, primarily at hatchery trapping facilities downstream from high-head dams. More than 190,000 internal body temperature records were collected (mean ~2800 per fish) and associated with 14 main stem and tributary reaches. Most salmon experienced a wide temperature range (minima ~8-10 °C; maxima ~13-22 °C) and 65% encountered potentially stressful conditions (≥18 °C). The warmest salmon temperatures were in lower Willamette River reaches, where some fish exhibited short-duration behavioral thermoregulation. Cumulative temperature exposure, measured by degree days (DD) above 0 °C, varied more than seven-fold among individuals (range=208-1498 DDs) and more than two-fold among sub-basin populations, on average. Overall, ~72% of DDs accrued in tributaries and ~28% were in the Willamette River main stem. DD differences among individuals and populations were related to migration distance, migration duration, and salmon trapping protocols (i.e., extended pre-collection holding in tributaries versus hatchery collection shortly after tributary entry). The combined data provide spatially- and temporally-referenced information on both short-duration stressful temperature exposure and the biologically important total exposure. Thermal exposure in this population complex proximately influences adult salmon physiology, maturation, and disease processes and ultimately affects prespawn mortality and fitness. The results should help managers develop more effective salmon recovery plans in basins with marginal thermal conditions.

Indirect effects of impoundment on migrating fish: temperature gradients in fish ladders slow dam passage by adult Chinook salmon and steelhead.

Thermal layering in reservoirs upstream from hydroelectric dams can create temperature gradients in fishways used by upstream migrating adults. In the Snake River, Washington, federally-protected adult salmonids (Oncorhynchus spp.) often encounter relatively cool water in dam tailraces and lower ladder sections and warmer water in the upstream portions of ladders. Using radiotelemetry, we examined relationships between fish passage behavior and the temperature difference between the top and bottom of ladders (∆T) at four dams over four years. Some spring Chinook salmon (O. tshawytscha) experienced ∆T ≥ 0.5 °C. Many summer and fall Chinook salmon and summer steelhead (O. mykiss) experienced ∆T ≥ 1.0 °C, and some individuals encountered ΔT > 4.0°C. As ΔT increased, migrants were consistently more likely to move down fish ladders and exit into dam tailraces, resulting in upstream passage delays that ranged from hours to days. Fish body temperatures equilibrated to ladder temperatures and often exceeded 20°C, indicating potential negative physiological and fitness effects. Collectively, the results suggest that gradients in fishway water temperatures present a migration obstacle to many anadromous migrants. Unfavorable temperature gradients may be common at reservoir-fed fish passage facilities, especially those with seasonal thermal layering or stratification. Understanding and managing thermal heterogeneity at such sites may be important for ensuring efficient upstream passage and minimizing stress for migratory, temperature-sensitive species.

Use of Night Video to Enumerate Adult Pacific Lamprey Passage at Hydroelectric Dams: Challenges and Opportunities to Improve Escapement Estimates

Abstract Reliable estimates of adult Pacific lamprey Entosphenus tridentatus escapement are critically needed to improve management of this declining and ecologically important species. The longest time series of Pacific lamprey counts are from count stations at Columbia River basin dams designed to enumerate adult salmonids during the day, but many Pacific lamprey pass at night. To estimate their total escapement, we used video to monitor nighttime lamprey passage in combination with daytime counts at two count stations at Bonneville Dam and two at The Dalles Dam in 2007–2008. We examined relationships among day and night counts and evaluated the potential for using expansion factors to estimate total escapement from past and future daytime count data. As expected, daytime counts systematically underestimated total lamprey passage, and day and night counts were positively correlated in most comparisons. Unexpectedly, ratios of night: day counts varied widely among sites and years because patterns of upst...

Migration depths of adult steelhead Oncorhynchus mykiss in relation to dissolved gas supersaturation in a regulated river system

Adult steelhead Oncorhynchus mykiss tagged with archival transmitters primarily migrated through a large river corridor at depths >2 m interspersed with frequent but short (<5 min) periods closer to the surface. The recorded swimming depths and behaviours probably provided adequate hydrostatic compensation for the supersaturated dissolved gas conditions encountered and probably limited development of gas bubble disease (GBD). Results parallel those from a concurrent adult Chinook salmon Oncorhynchus tshawytscha study, except O. mykiss experienced greater seasonal variability and were more likely to have depth uncompensated supersaturation exposure in some dam tailraces, perhaps explaining the higher incidence of GBD in this species.

Condition-Dependent En Route Migration Mortality of Adult Chinook Salmon in the Willamette River Main Stem

AbstractEpisodically high adult mortality during migration and near spawning sites has hindered the recovery of threatened spring-run Chinook Salmon Oncorhynchus tshawytscha in Oregon’s Willamette River basin. In 2011–2014, we assessed migration mortality for 762 radio-tagged adults along a ~260-km reach of the main stem of the Willamette River. Annual survival of salmon to spawning tributaries ranged from 0.791 (95% CI = 0.741–0.833) to 0.896 (0.856–0.926), confirming concerns about mortality in the migration corridor. In a series of general linear models, descaling, marine mammal injuries, and head injuries to adult Chinook Salmon were linked to reduced survival during migration to tributaries. Many injuries were minor (i.e., epidermal abrasions), which we hypothesize were unlikely to have caused direct mortality but may have increased salmon vulnerability to pathogens or other disease processes. Mortality in the main stem was not significantly associated with salmon body size, energetic status, sex, or...

Thermal exposure of adult Chinook salmon and steelhead: Diverse behavioral strategies in a large and warming river system

Rising river temperatures in western North America have increased the energetic costs of migration and the risk of premature mortality in many Pacific salmon (Oncorhynchus spp.) populations. Predicting and managing risks for these populations requires data on acute and cumulative thermal exposure, the spatio-temporal distribution of adverse conditions, and the potentially mitigating effects of cool-water refuges. In this study, we paired radiotelemetry with archival temperature loggers to construct continuous, spatially-explicit thermal histories for 212 adult Chinook salmon (O. tshawytscha) and 200 adult steelhead (O. mykiss). The fish amassed ~500,000 temperature records (30-min intervals) while migrating through 470 kilometers of the Columbia and Snake rivers en route to spawning sites in Idaho, Oregon, and Washington. Spring- and most summer-run Chinook salmon migrated before river temperatures reached annual highs; their body temperatures closely matched ambient temperatures and most had thermal maxima in the lower Snake River. In contrast, many individual fall-run Chinook salmon and most steelhead had maxima near thermal tolerance limits (20–22 °C) in the lower Columbia River. High temperatures elicited extensive use of thermal refuges near tributary confluences, where body temperatures were ~2–10 °C cooler than the adjacent migration corridor. Many steelhead used refuges for weeks or more whereas salmon use was typically hours to days, reflecting differences in spawn timing. Almost no refuge use was detected in a ~260-km reach where a thermal migration barrier may more frequently develop in future warmer years. Within population, cumulative thermal exposure was strongly positively correlated (0.88 ≤ r ≤ 0.98) with migration duration and inconsistently associated (-0.28 ≤ r ≤ 0.09) with migration date. All four populations have likely experienced historically high mean and maximum temperatures in recent years. Expected responses include population-specific shifts in migration phenology, increased reliance on patchily-distributed thermal refuges, and natural selection favoring temperature-tolerant phenotypes.

Reservoir provides cool-water refuge for adult Chinook salmon in a trap-and-haul reintroduction program

Trap-and-haul is a mitigation strategy at many hydropower dams lacking upstream fish-passage facilities, and protocols are needed to maximise its effectiveness. We used biotelemetry to assess the potential benefits of releasing transported adult Chinook salmon (Oncorhynchus tshawytscha) into a cold-water reservoir v. a relatively warm-water tributary before spawning. Over 5 years, we released 160 salmon into Foster Reservoir (Oregon, USA) and another 102 into the South Santiam River near historical salmon spawning areas further upstream. In total, 70% of reservoir-released salmon entered an upriver tributary after spending a median of 3–95 days annually in the reservoir. Data recovered from 61 archival temperature loggers indicated that salmon were ~3–6°C cooler per day in the reservoir than in the river. We estimated that cumulative exposure of reservoir-released fish was reduced by 64 degree days, on average (range=–129 to 392), relative to river-released fish. Release into the reservoir was not risk free; 14% of all reservoir-released fish fell back downstream v. 1% of river-released fish. We conclude that reduced transport distance, reduced thermal exposure and potential survival benefits of releasing salmon into reservoirs should be weighed against risks of factors such as fallback and homing errors.

Inter-Observer Bias in Fish Classification and Enumeration Using Dual-frequency Identification Sonar (DIDSON): A Pacific Lamprey Case Study

Abstract Dual-frequency Identification Sonar (DIDSON) is increasingly used as a fish monitoring and enumeration tool, but many studies do not evaluate potential observer biases. In this project, we assessed inter-observer differences in the identification and enumeration of adult Pacific lamprey (Entosphenus tridentatus) imaged with DIDSON passing a large dam fishway. Six trained viewers independently identified lamprey observation ‘events’ in the same ∼ 12 h of DIDSON data collected at several fishway locations using two sonar orientations. Among-viewer variability in lamprey enumeration was high and viewer agreement on individual lamprey was often low. A total of 274 unique potential Pacific lamprey events was identified, but individual viewers scored only 89–173 events each (mean = 131, CV = 24%) or 32–63% of the total. Viewer identification rates (events/h) varied several-fold at some sites which we attributed primarily to event non-detection rather than species misclassification. Identification differences were related to viewer confidence, image duration, total fish density, and sonar orientation. Among-viewer agreement was highest in standard-orientation deployments lateral to the swimming lamprey, where images appeared as though acquired from overhead. Imagery in standard orientation had longer event duration and enhanced detection of anguilliform swimming, the most important characteristic for distinguishing Pacific lamprey from other species. Lamprey events observed in rolled orientation (sonar rotated 90°) tended to be short duration with foreshortened head- or tail-first images that reduced viewer confidence. Our results highlight the importance of quality control assessments in acoustic imaging studies, especially those targeting cryptic species and those conducted in hydraulically challenging, multi-species environments.