Merja Itävaara

Biodegradation of lignin in a compost environment: a review

Abstract Composting is nowadays a general treatment method for municipal solid waste. Compostable household waste contains, together with vegetable material, varying amounts of papers and boards. In the European Union composting is regarded as one recycling method for packages and this will probably favour compostable packages, like papers and boards, in the future. Paper is made up of lignocellulose and it may contain up to 20% of lignin. Efficient degradation of papers in composting plants means that biodegradation of lignin is also needed. However, very little is known about lignin degradation by mixed microbial compost populations, although lignin degradation by white-rot fungi has been extensively studied in recent years. Organic material is converted to carbon dioxide, humus, and heat by compost microorganisms. It is assumed that humus is formed mainly from lignin. Thus, lignin is not totally mineralized during composting. The elevated temperatures found during the thermophilic phase are essential for rapid degradation of lignocellulose. Complex organic compounds like lignin are mainly degraded by thermophilic microfungi and actinomycetes. The optimum temperature for thermophilic fungi is 40–50°C which is also the optimum temperature for lignin degradation in compost.

Biodegradation of polylactide in aerobic and anaerobic thermophilic conditions

Biodegradable polymers are designed to resist a number of environmental factors during use, but to be biodegradable under disposal conditions. The biodegradation of polylactide (PLLA) was studied at different elevated temperatures in both aerobic and anaerobic, aquatic and solid state conditions. In the aerobic aquatic headspace test the mineralisation of PLLA was very slow at room temperature, but faster under thermophilic conditions. The clear effect of temperature on the biodegradability of PLLA in the aquatic tests indicates that its polymer structure has to be hydrolysed before microorganisms can utilise it as a nutrient source. At similar elevated temperatures, the biodegradation of PLLA was much faster in anaerobic solid state conditions than in aerobic aquatic conditions. The behaviour of PLLA in the natural composting process was similar to that in the aquatic biodegradation tests, biodegradation starting only after the beginning of the thermophilic phase. These results indicate that PLLA can be considered as a compostable material, being stable during use at mesophilic temperatures, but degrading rapidly during waste disposal in compost or anaerobic treatment facilities.

Characterization of bacterial diversity to a depth of 1500 m in the Outokumpu deep borehole, Fennoscandian Shield

This paper demonstrates the first microbiological sampling of the Outokumpu deep borehole (2516 m deep) aiming at characterizing the bacterial community composition and diversity of sulphate-reducing bacteria (SRB) in Finnish crystalline bedrock aquifers. Sampling was performed using a 1500-m-long pressure-tight tube that provided 15 subsamples, each corresponding to a 100-m section down the borehole. Microbial density measurements, as well as community fingerprinting with 16S rRNA gene-based denaturing gradient gel electrophoresis, demonstrated that microbial communities in the borehole water varied as a function of sampling depth. In the upper part of the borehole, bacteria affiliated to the family Comamonadaceae dominated the bacterial community. Further down the borehole, bacteria affiliated to the class Firmicutes became more prominent and, according to 16S rRNA gene clone libraries, dominated the bacterial community at 1400-1500 m. In addition, the largest number of bacterial classes was observed at 1400-1500 m. The dsrB genes detected in the upper part of the borehole were more similar to the dsrB genes of cultured SRBs, such as the genus Desulfotomaculum, whereas in the deeper parts of the borehole, the dsrB genes were more closely related to the uncultured bacteria that have been detected earlier in deep earth crust aquifers.

Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield.

Microbial life in the nutrient-limited and low-permeability continental crystalline crust is abundant but remains relatively unexplored. Using high-throughput sequencing to assess the 16S rRNA gene diversity, we found diverse bacterial and archaeal communities along a 2516-m-deep drill hole in continental crystalline crust in Outokumpu, Finland. These communities varied at different sampling depths in response to prevailing lithology and hydrogeochemistry. Further analysis by shotgun metagenomic sequencing revealed variable carbon and nutrient utilization strategies as well as specific functional and physiological adaptations uniquely associated with specific environmental conditions. Altogether, our results show that predominant geological and hydrogeochemical conditions, including the existence and connectivity of fracture systems and the low amounts of available energy, have a key role in controlling microbial ecology and evolution in the nutrient and energy-poor deep crustal biosphere.

Monitoring of accelerated naphthalene-biodegradation in a bioaugmented soil slurry

The effect of microbial inoculation on the mineralization of naphthalene in a bioslurry treatment was evaluated in soil slurry microcosms. Inoculation by Pseudomonas putida G7 carrying the naphthalene dioxygenase (nahA) gene resulted in rapid mineralization of naphthalene, whereas indigenous microorganisms in the PAH-contaminated soil required a 28 h adaptation period before significant mineralization occurred. The number of nahA-like gene copies increased in both the inoculated and non-inoculated soil as mineralization proceeded, indicating selection towards naphthalene dioxygenase producing bacteria in the microbial community. In addition, 16S rRNA analysis by denaturing gradient gel electrophoresis (DGGE) analysis showed that significant selection occurred in the microbial community as a result of biodegradation. However, the indigenous soil bacteria were not able to compete with the P. putida G7 inoculum adapted to naphthalene biodegradation, even though the soil microbial community slightly suppressed naphthalene mineralization by P. putida G7.

Microbial degradation of poly-(L-lactic acid) oligomers

Biotic and abiotic degradation of poly-(l-lactic acid) (PLLA) oligomers of molecular weight (MW) 260–2880 g mol−1 has been studied in an aquatic aerobic headspace biodegradation test for six months. Water soluble/dispersable PLLA oligomers (MW 260–550 g mol−1) biodegraded at 25 °C and at 58 °C. Larger, crystalline and hydrophobic oligomers (MW 550–2880 g mol−1) biodegraded only at 58 °C. Weight-average molecular weights of PLLA-oligomers decreased both during biotic and abiotic degradation, although slightly more during biotic degradation. The surface and inner structures of biotically incubated PLLA oligomers were more porous than those of abiotically degraded oligomers. Thus abiotic hydrolysis of PLLA-structure to lactic acid appears to be an essential, but not the only explanation for its degradation. PLLA polymer chain seems to be cleaved also enzymatically to lactic acid.

An overview of methods for biodegradability testing of biopolymers and packaging materials

This paper gives an overview of the methods used at the Technical Research Centre of Finland (VTT) for the biodegradability testing of solid polymers and packaging materials. Biodegradability of each polymer included in the packaging material should be separately tested. Aquatic aerobic and anaerobic tests and, in specific cases, enzymatic tests are used for screening purposes. The application of aquatic aerobic tests—an automated Sturm test (OECD 301B; ASTM D5209) and a VTT headspace test as well as an anaerobic test (ASTM D5210)—is discussed. Three composting tests and their applications are summarized. These tests are regarded as important because they can be used to simulate the biodegradability under real-life conditions. Several tests are needed to determine the fate of the polymer under real conditions and to study its biodegradability in different environments. The time needed for complete biodegradation of polymers in nature is impossible to predict with laboratory tests and should be studiedin vivo.

Biodegradation of radiolabelled synthetic lignin (14C-DHP) and mechanical pulp in a compost environment

Abstract. Mineralization of radioactive synthetic lignin (14C-DHP) was studied in a compost environment at 35, 50 and 58°C. Compost samples were successively extracted with water, dioxane and alkali, and the molecular weight distribution of some extracts was determined by gel permeation chromatography (GPC). Biodegradation of lignin-containing spruce groundwood (SGW) and pine sawdust was concurrently determined in controlled composting tests by measuring evolved CO2. The temperatures were the same as in the 14C-DHP mineralization experiment and bleached kraft paper, with a lignin content of 0.2%, was used as a reference. The mineralization of 14C-DHP was relatively high (23–24%) at 35°C and 50°C, although the mixed population of compost obviously lacks the most effective lignin degraders. At 58°C the mineralization of 14C-DHP, as well as the biodegradation of SGW and sawdust, was very low, indicating that the lignin-degrading organisms of compost were inactivated at this temperature. SGW was poorly biodegradable (<40%) in controlled composting tests compared with kraft paper (77–86%) at all temperatures, which means that lignin inhibits the degradation of carbohydrates. During the incubation, water-soluble degradation products, mainly monomers and dimers, and the original 14C-DHP were either mineralized or bound to humic substances. A substantial fraction of 14C-DHP was incorporated into humin or other insolubles.

Methanogenic and Sulphate-Reducing Microbial Communities in Deep Groundwater of Crystalline Rock Fractures in Olkiluoto, Finland

The long-term safety of final disposal of spent nuclear fuel in the deep geosphere is dependent on stability of biogeochemical conditions at the disposal site. Microbial processes, such as sulphate reduction and methanogenesis, may have profound effects on site biogeochemistry. In this study, sulphate-reducing bacteria and methane-producing archaea were investigated at depths ranging from 68 to 545 m in crystalline rock fractures at an intended spent nuclear fuel disposal site in Olkiluoto, Finland. Denaturing gradient gel electrophoresis detected diverse sulphate-reducing bacterial communities in all samples. Although the number of dsrB gene copies was below 103 copies ml−1 in all analyzed samples according to real-time quantitative PCR, their abundance was highest in samples that had the highest sulphate concentrations. Several distinct mcrA gene fragments were also recovered from most of the analyzed samples by cloning, although the number of methanogens was lower than that of sulphate-reducing bacteria when measured by mcrA-targeted quantitative PCR. The detected gene fragments were most closely related to sequences obtained from aquatic and deep subsurface environments. Results imply that sulphate reduction, methanogenesis, and anaerobic methane oxidation may all take place in the Olkiluoto deep geobiosphere.

Detection of toxicity released by biodegradable plastics after composting in activated vermiculite

The composting test method based on activated vermiculite is a comprehensive system for the assessment of the environmental impact of biodegradable plastics. It allows, in a single test, (i) the measurement of the mineralization of the polymer under study; (ii) the retrieval of the final polymeric residues and (iii) determination of the biomass (to make a final mass balance); (iv) detection of breakdown products of the original polymer. In this study it is shown that the vermiculite test method is also suitable to perform ecotoxicological studies. The Flash test is a method based on kinetic measurement of bioluminescence by Vibrio fischeri, and was applied to evaluate the toxicity of compost samples and vermiculite samples after the biodegradation of a polyurethane (PU) based plastic material. Toxicity was detected in vermiculite samples contaminated by 4,4′ diamino diphenyl methane (MDA), a toxic breakdown product released by the PU moiety, as shown by HPLC. On the other hand, neither toxicity nor the presence of MDA was detected in mature compost. A recovery experiment previously performed had shown a 10% MDA recovery yield from mature compost. The possibility of testing the ecotoxicity of extracts obtained from mineral matrix after biodegradation makes the vermiculite test system particularly interesting for the overall assessment of the environmental impact of biodegradable plastics.