Meryl C. Mims

Life history theory predicts fish assemblage response to hydrologic regimes

The hydrologic regime is regarded as the primary driver of freshwater ecosystems, structuring the physical habitat template, providing connectivity, framing biotic interactions, and ultimately selecting for specific life histories of aquatic organisms. In the present study, we tested ecological theory predicting directional relationships between major dimensions of the flow regime and life history composition of fish assemblages in perennial free-flowing rivers throughout the continental United States. Using long-term discharge records and fish trait and survey data for 109 stream locations, we found that 11 out of 18 relationships (61%) tested between the three life history strategies (opportunistic, periodic, and equilibrium) and six hydrologic metrics (two each describing flow variability, predictability, and seasonality) were statistically significant (P < or = 0.05) according to quantile regression. Our results largely support a priori hypotheses of relationships between specific flow indices and relative prevalence of fish life history strategies, with 82% of all significant relationships observed supporting predictions from life history theory. Specifically, we found that (1) opportunistic strategists were positively related to measures of flow variability and negatively related to predictability and seasonality, (2) periodic strategists were positively related to high flow seasonality and negatively related to variability, and (3) the equilibrium strategists were negatively related to flow variability and positively related to predictability. Our study provides important empirical evidence illustrating the value of using life history theory to understand both the patterns and processes by which fish assemblage structure is shaped by adaptation to natural regimes of variability, predictability, and seasonality of critical flow events over broad biogeographic scales.

Large-scale Flow Experiments for Managing River Systems

Experimental manipulations of streamflow have been used globally in recent decades to mitigate the impacts of dam operations on river systems. Rivers are challenging subjects for experimentation, because they are open systems that cannot be isolated from their social context. We identify principles to address the challenges of conducting effective large-scale flow experiments. Flow experiments have both scientific and social value when they help to resolve specific questions about the ecological action of flow with a clear nexus to water policies and decisions. Water managers must integrate new information into operating policies for large-scale experiments to be effective. Modeling and monitoring can be integrated with experiments to analyze long-term ecological responses. Experimental design should include spatially extensive observations and well-defined, repeated treatments. Large-scale flow manipulations are only a part of dam operations that affect river systems. Scientists can ensure that experimental manipulations continue to be a valuable approach for the scientifically based management of river systems.

Are large-scale flow experiments informing the science and management of freshwater ecosystems?

Greater scientific knowledge, changing societal values, and legislative mandates have emphasized the importance of implementing large-scale flow experiments (FEs) downstream of dams. We provide the first global assessment of FEs to evaluate their success in advancing science and informing management decisions. Systematic review of 113 FEs across 20 countries revealed that clear articulation of experimental objectives, while not universally practiced, was crucial for achieving management outcomes and changing dam-operating policies. Furthermore, changes to dam operations were three times less likely when FEs were conducted primarily for scientific purposes. Despite the recognized importance of riverine flow regimes, four-fifths of FEs involved only discrete flow events. Over three-quarters of FEs documented both abiotic and biotic outcomes, but only one-third examined multiple taxonomic responses, thus limiting how FE results can inform holistic dam management. Future FEs will present new opportunities to advance scientifically credible water policies.

Geography disentangles introgression from ancestral polymorphism in Lake Malawi cichlids.

Phenotypically diverse Lake Malawi cichlids exhibit similar genomes. The extensive sharing of genetic polymorphism among forms has both intrigued and frustrated biologists trying to understand the nature of diversity in this and other rapidly evolving systems. Shared polymorphism might result from hybridization and/or the retention of ancestrally polymorphic alleles. To examine these alternatives, we used new genomic tools to characterize genetic differentiation in widespread, geographically structured populations of Labeotropheus fuelleborni and Metriaclima zebra. These phenotypically distinct species share mitochondrial DNA (mtDNA) haplotypes and show greater mtDNA differentiation among localities than between species. However, Bayesian analysis of nuclear single nucleotide polymorphism (SNP) data revealed two distinct genetic clusters corresponding perfectly to morphologically diagnosed L. fuelleborni and M. zebra. This result is a function of the resolving power of the multi‐locus dataset, not a conflict between nuclear and mitochondrial partitions. Locus‐by‐locus analysis showed that mtDNA differentiation between species (FCT) was nearly identical to the median single‐locus SNP FCT. Finally, we asked whether there is evidence for gene flow at sites of co‐occurrence. We used simulations to generate a null distribution for the level of differentiation between co‐occurring populations of L. fuelleborni and M. zebra expected if there was no hybridization. The null hypothesis was rejected for the SNP data; populations that co‐occur at rock reef sites were slightly more similar than expected by chance, suggesting recent gene flow. The coupling of numerous independent markers with extensive geographic sampling and simulations utilized here provides a framework for assessing the prevalence of gene flow in recently diverged species.

Dispersal ability and habitat requirements determine landscape-level genetic patterns in desert aquatic insects

Species occupying the same geographic range can exhibit remarkably different population structures across the landscape, ranging from highly diversified to panmictic. Given limitations on collecting population‐level data for large numbers of species, ecologists seek to identify proximate organismal traits—such as dispersal ability, habitat preference and life history—that are strong predictors of realized population structure. We examined how dispersal ability and habitat structure affect the regional balance of gene flow and genetic drift within three aquatic insects that represent the range of dispersal abilities and habitat requirements observed in desert stream insect communities. For each species, we tested for linear relationships between genetic distances and geographic distances using Euclidean and landscape‐based metrics of resistance. We found that the moderate‐disperser Mesocapnia arizonensis (Plecoptera: Capniidae) has a strong isolation‐by‐distance pattern, suggesting migration–drift equilibrium. By contrast, population structure in the flightless Abedus herberti (Hemiptera: Belostomatidae) is influenced by genetic drift, while gene flow is the dominant force in the strong‐flying Boreonectes aequinoctialis (Coleoptera: Dytiscidae). The best‐fitting landscape model for M. arizonensis was based on Euclidean distance. Analyses also identified a strong spatial scale‐dependence, where landscape genetic methods only performed well for species that were intermediate in dispersal ability. Our results highlight the fact that when either gene flow or genetic drift dominates in shaping population structure, no detectable relationship between genetic and geographic distances is expected at certain spatial scales. This study provides insight into how gene flow and drift interact at the regional scale for these insects as well as the organisms that share similar habitats and dispersal abilities.

Home-field advantage: native signal crayfish (Pacifastacus leniusculus) out consume newly introduced crayfishes for invasive Chinese mystery snail (Bellamya chinensis)

The introduction of non-indigenous plants, animals and pathogens is one of today’s most pressing environmental challenges. Freshwater ecologists are challenged to predict the potential consequences of species invasions because many ecosystems increasingly support novel assemblages of native and non-native species that are likely to interact in complex ways. In this study we evaluated how native signal crayfish (Pacifastacus leniusculus) and non-native red swamp crayfish (Procambarus clarkii) and northern crayfish (Orconectes virilis) utilize a novel prey resource: the non-native Chinese mystery snail (Bellamya chinensis). All species are widespread in the United States, as well as globally, and recent surveys have discovered them co-occurring in lakes of Washington State. A series of mesocosm experiments revealed that crayfish are able to consume B. chinensis, despite the snail’s large size, thick outer shell and trapdoor defense behaviour. Crayfish exhibited size-selective predation whereby consumption levels decreased with increasing snail size; a common pattern among decapod predators. Comparison of prey profitability curves—defined as the yield of food (weight of snail tissue) per second of feeding time (the time taken to crack the shell and consume the contents)—suggests that small and very large snails may represent the most profitable prey choice. By contrast, previous studies have reported the opposite pattern for crayfish consumption on thin-shelled snails. For all snail size classes, we found that native P. leniusculus and invasive O. virilis consumed greater numbers of snails than invasive P. clarkii. Moreover, P. leniusculus consistently handled and consumed snails at a faster pace compared to both invasive crayfishes across the range of snail sizes examined in our study. These results suggest not only that B. chinensis is a suitable food source for crayfish, but also that native P. leniusculus may ultimately out-consume invasive crayfishes for this new prey resource.

Links between two interacting factors, novel habitats and non-native predators, and aquatic invertebrate communities in a dryland environment

In dryland regions, increased demand for water has led to the reduction of natural aquatic habitats and threatens persisting aquatic habitats. In the Madrean Sky Islands (MSI), water demands have also resulted in the creation of novel aquatic habitats, including stock ponds. Stock ponds are important surrogate habitat for native species, yet little is known about the aquatic invertebrates utilizing these habitats. Additionally, stock ponds support non-native vertebrate predators including American bullfrogs (Lithobates catesbeiana) and Western mosquitofish (Gambusia affinis), and the effects of these predators on invertebrate communities in stock ponds are unknown. We explored similarities in invertebrate communities in stream pools and stock ponds and compared aquatic invertebrate community composition, abundance, and richness in stock ponds with and without non-native predators. We found that despite considerable functional (trait-based) overlap in aquatic invertebrate communities, a large majority (81%) of taxa were exclusive to either stock ponds or stream pools. Additionally, we observed few differences in aquatic invertebrate community composition, abundance, and richness in stock ponds with and without non-native predators. We discuss ecological implications of our observations, limitations of our approach, and the importance of future work in determining the role of stock ponds in conservation of the region’s aquatic invertebrates.

Assessing habitat requirements of pond-breeding amphibians in a highly urbanized landscape: implications for management

Management of urban aquatic habitats for native wildlife, such as amphibians, is an important contemporary goal for many municipalities. However, our understanding of how local and landscape characteristics of urban aquatic habitat promote or inhibit amphibian occupancy and recruitment is limited. In this study, we examined amphibian community composition and occurrence patterns in ponds, wetlands, and swales of Gresham, Oregon. We collected occurrence data for five native amphibians: northwestern salamander (Ambystoma gracile), long-toed salamander (A. macrodactylum), Pacific chorus frog (Pseudacris regilla), northern red-legged frog (Rana aurora aurora), and rough-skinned newt (Taricha granulosa) as well as one non-native amphibian, the American bullfrog (Lithobates catesbeianus). One hundred sites were surveyed from 2007 to 2013. Local and landscape attributes were characterized for each site, and potential drivers of species occupancy were evaluated using a combination of multivariate approaches and generalized linear models. In general, percent impervious surface and distance to nearest forest patch, both associated with urbanization, were negatively correlated with site occupancy for all species. Non-native vegetation was also negatively associated with occupancy of three species (long-toed salamanders, Pacific chorus frogs, and northern red-legged frogs). In contrast, occupancy was positively correlated with pond depth and hydroperiod length for all species. We found evidence of two distinct groups of co-occurring amphibian species driven by habitat depth and hydroperiod. Finally, we report results of threshold analyses that examined species-specific habitat associations. This study describes urban habitat associations of a native amphibian community, identifies factors with positive, negative or mixed relationships with amphibian species, and is an important step in informing the management of urban aquatic habitat to promote persistence of native amphibians.

Genetic Differentiation, Isolation-by-Distance, and Metapopulation Dynamics of the Arizona Treefrog (Hyla wrightorum) in an Isolated Portion of Its Range.

Population attributes such as diversity, connectivity, and structure are important components of understanding species persistence and vulnerability to extinction. Hyla wrightorum, the Arizona treefrog, is native to the southwestern United States and Mexico, and an isolated group of populations exists in the Huachuca Mountains and Canelo Hills (HMCH) of southeastern Arizona, USA. Due to concerns about declining observations of the species within the isolated HMCH portion of its range, the HMCH group is currently a candidate for federal protection under the U.S. Endangered Species Act. We present results of a genetic study examining population diversity, structure, and connectivity within the HMCH region. We sampled DNA from H. wrightorum larvae and adults from ten distinct locations, 8 of which were breeding sites and 4 of which were previously undescribed localities for the species. We developed and genotyped 17 polymorphic microsatellite loci and quantified genetic diversity, population differentiation, and landscape influences on population genetic structure. We found evidence of larger than expected effective population sizes, significant genetic differentiation between populations, and evidence of distance being the primary driver of genetic structure of populations with some influence of slope and canopy cover. We found little evidence of recent genetic bottlenecks, and individual-based analyses indicate admixture between populations despite significant genetic differentiation. These patterns may indicate that the breeding sites within the Huachuca Mountains constitute a metapopulation. We suggest that the HMCH region may contain larger and more connected breeding populations than previously understood, but the dynamics of this system and the limited geographic extent of the HMCH group justify current concern for the persistence of the species in this region. Efforts to ensure availability of high-quality breeding habitats and control for local threats such as effects of invasive predators may be critical to the persistence of these unique populations of H. wrightorum.

Traits-based approaches support the conservation relevance of landscape genetics

Calls for evaluating general principles in landscape genetics reflect a broader recognition that multispecies inference is a promising strategy for supporting conservation actions across wide-ranging taxonomies and geographies. Formal evaluation of frameworks for multispecies inference is critical to identify opportunities for generalization and to avoid misguided extrapolation that results in ineffective conservation and management efforts. Traits-based approaches are now widely recognized as useful in addressing knowledge gaps where species-specific data may not be available or feasible to obtain. Here we present a case for the application of traits-based approaches in landscape genetics to improve conservation application. We discuss the fundamental theoretical framework and growing empirical evidence supporting the utility of traits-based approaches in landscape genetics, and we highlight an example of the implementation of traits to predict landscape genetic relationships for a range of aquatic taxa native to the southwestern United States. Finally, we discuss opportunities, challenges, and future directions of using traits to characterize landscape genetic relationships. Ultimately, traits-based approaches can help address growing calls for the development and testing of general principles in landscape genetics in order to improve application to conservation challenges.