Michael M. McGlue

Climate warming reduces fish production and benthic habitat in Lake Tanganyika, one of the most biodiverse freshwater ecosystems

Significance Understanding how climate change affects ecosystem productivity is critical for managing fisheries and sustaining biodiversity. African lakes are warming rapidly, potentially jeopardizing both their high endemic biodiversity and important fisheries. Using paleoecological records from Lake Tanganyika, we show that declines in commercially important fishes and endemic molluscs have accompanied lake warming. Ongoing declines in fishery species began well before the advent of commercial fishing in the mid-20th century. Warming has intensified the stratification of the water column, thereby trapping nutrients in deep water where they cannot fuel primary production and food webs. Simultaneously, warming has enlarged the low-oxygen zone, considerably narrowing the coastal habitat where most of Tanganyika’s endemic species are found. Warming climates are rapidly transforming lake ecosystems worldwide, but the breadth of changes in tropical lakes is poorly documented. Sustainable management of freshwater fisheries and biodiversity requires accounting for historical and ongoing stressors such as climate change and harvest intensity. This is problematic in tropical Africa, where records of ecosystem change are limited and local populations rely heavily on lakes for nutrition. Here, using a ∼1,500-y paleoecological record, we show that declines in fishery species and endemic molluscs began well before commercial fishing in Lake Tanganyika, Africa’s deepest and oldest lake. Paleoclimate and instrumental records demonstrate sustained warming in this lake during the last ∼150 y, which affects biota by strengthening and shallowing stratification of the water column. Reductions in lake mixing have depressed algal production and shrunk the oxygenated benthic habitat by 38% in our study areas, yielding fish and mollusc declines. Late-20th century fish fossil abundances at two of three sites were lower than at any other time in the last millennium and fell in concert with reduced diatom abundance and warming water. A negative correlation between lake temperature and fish and mollusc fossils over the last ∼500 y indicates that climate warming and intensifying stratification have almost certainly reduced potential fishery production, helping to explain ongoing declines in fish catches. Long-term declines of both benthic and pelagic species underscore the urgency of strategic efforts to sustain Lake Tanganyika’s extraordinary biodiversity and ecosystem services.

Continuous 1.3-million-year record of East African hydroclimate, and implications for patterns of evolution and biodiversity.

Significance Lake Malawi is one of the world’s oldest and deepest lakes, with >1,000 species of endemic cichlid fish; its water bottom anoxia prevents bioturbation of deep-water sediments, which preserve exceptional paleoclimate signals. The Lake Malawi Drilling Project recovered the first continuous 1.3-My record of past climates of the African interior. These sediments show that the catchment experienced 24 dry periods over that time, when lake levels dropped more than 200 m. After ∼800,000 years ago, the lake was commonly deeper and overflowing, indicating wetter conditions, but lowstand intervals became more prolonged and extreme. These changes promoted the evolution of the endemic cichlid fishes, through shifting of habitats, and through isolation and restriction of populations. The transport of moisture in the tropics is a critical process for the global energy budget and on geologic timescales, has markedly influenced continental landscapes, migratory pathways, and biological evolution. Here we present a continuous, first-of-its-kind 1.3-My record of continental hydroclimate and lake-level variability derived from drill core data from Lake Malawi, East Africa (9–15° S). Over the Quaternary, we observe dramatic shifts in effective moisture, resulting in large-scale changes in one of the world’s largest lakes and most diverse freshwater ecosystems. Results show evidence for 24 lake level drops of more than 200 m during the Late Quaternary, including 15 lowstands when water levels were more than 400 m lower than modern. A dramatic shift is observed at the Mid-Pleistocene Transition (MPT), consistent with far-field climate forcing, which separates vastly different hydroclimate regimes before and after ∼800,000 years ago. Before 800 ka, lake levels were lower, indicating a climate drier than today, and water levels changed frequently. Following the MPT high-amplitude lake level variations dominate the record. From 800 to 100 ka, a deep, often overfilled lake occupied the basin, indicating a wetter climate, but these highstands were interrupted by prolonged intervals of extreme drought. Periods of high lake level are observed during times of high eccentricity. The extreme hydroclimate variability exerted a profound influence on the Lake Malawi endemic cichlid fish species flock; the geographically extensive habitat reconfiguration provided novel ecological opportunities, enabling new populations to differentiate rapidly to distinct species.

Environmental change explains cichlid adaptive radiation at Lake Malawi over the past 1.2 million years

Significance Tropical African lakes are well-known to house exceptionally biodiverse assemblages of fish and other aquatic fauna, which are thought to be at risk in the future. Although the modern assemblages are well-studied, direct evidence of the origin of this incredible wealth of species and the mechanisms that drive speciation are virtually unknown. We use a long sedimentary record from Lake Malawi to show that over the last 1.2 My both large-scale climatic and tectonic changes resulted in wet–dry transitions that led to extraordinary habitat variability and rapid diversification events. This work allows us to understand the environmental context of aquatic evolution in the most biodiverse tropical lake. Long paleoecological records are critical for understanding evolutionary responses to environmental forcing and unparalleled tools for elucidating the mechanisms that lead to the development of regions of high biodiversity. We use a 1.2-My record from Lake Malawi, a textbook example of biological diversification, to document how climate and tectonics have driven ecosystem and evolutionary dynamics. Before ∼800 ka, Lake Malawi was much shallower than today, with higher frequency but much lower amplitude water-level and oxygenation changes. Since ∼800 ka, the lake has experienced much larger environmental fluctuations, best explained by a punctuated, tectonically driven rise in its outlet location and level. Following the reorganization of the basin, a change in the pacing of hydroclimate variability associated with the Mid-Pleistocene Transition resulted in hydrologic change dominated by precession rather than the high-latitude teleconnections recorded elsewhere. During this time, extended, deep lake phases have abruptly alternated with times of extreme aridity and ecosystem variability. Repeated crossings of hydroclimatic thresholds within the lake system were critical for establishing the rhythm of diversification, hybridization, and extinction that dominate the modern system. The chronology of these changes closely matches both the timing and pattern of phylogenetic history inferred independently for the lake’s extraordinary array of cichlid fish species, suggesting a direct link between environmental and evolutionary dynamics.

Structure and Stratigraphy of the Lake Albert Rift, East Africa: Observations from Seismic Reflection and Gravity Data

Modern lake basins set within active continental rifts provide useful analogs for exploration efforts in ancient extensional basins that are known to be rich in hydrocarbons. Lake Albert is one of the Great Lakes of Africa and is located at the northern end of the western branch of the East African rift system. This large, but comparatively shallow, eutrophic, and probably geologically ephemeral lake basin serves as an end-member example of the modern tropical lake systems that occupy this extensional province. Seismic reflection and gravity data sets indicate that the basin contains a maximum of 5 km (3.1 mi) of synrift, dominantly lacustrine sedimentary fill, in two subbasins separated by a midbasin high. In contrast to other large rift basins in the western branch of the rift valley, the Lake Albert Rift is not a highly asymmetrical half-graben basin, but instead has subsided nearly symmetrically and continuously in the late Cenozoic along two extensive boundary fault systems on either side of the basin. Seismic sequences from across the basin were correlated to borehole stratigraphy from a deep well drilled on the Ugandan margin. These observations suggest that the basin has experienced a long-term change from a continuously open lacustrine, possibly deep lake system in the Miocene or early Pliocene, to an alternating shallow lacustrine and fluvial system in the mid and late Pleistocene. This history of basin evolution has led to the development of a rich hydrocarbon system.

Geology and Geomorphology of the Pantanal Basin

What is an inlier sedimentary basin? What are the main mechanisms of sedimentary infilling? How do the depositional systems behave? And last, but certainly not the least, what geological events occurred in the last million years and continue to take place in the Pantanal area today? These issues are considered in this chapter, based on available geological, geomorphological, and geochronological datasets. The Pantanal is an active sedimentary basin with numerous faults and associated earthquakes. Movements along these faults cause subsidence on blocks within the basin, generating depressions that are highly susceptible to flooding, and also create accommodation space for sediment storage. One hypothesis on the origin of the Pantanal Basin relates the processes of subsidence with tectonic activity in the Andean orogen and foreland system during the Quaternary. Alternatively, the lack of geochronological data leaves open the possibility that the basin formed much earlier, perhaps during an interval of widespread tectonism in Brazil during the Eocene. The modern Pantanal depositional tract is composed of the Paraguay River trunk system, numerous fluvial megafans and interfan floodplains, and thousands of lakes, many of them integral to the Nhecolândia landscape. The Pantanal’s geomorphology is most likely the product of climatic fluctuations and environmental changes that have been occurring since the Late Pleistocene. Relict morphologic features like paleochannels have been preserved on the surfaces of abandoned lobes on several large fluvial megafans. After a period dominated by arid conditions in the Late Pleistocene, the Pantanal area experienced an episode of humidification and increasing fluvial discharge in the Early Holocene. This process promoted important modifications in the extant drainage system, for example, the avulsion of the Paraguay River that caused the Nabileque paleomeander belt to be abandoned. The landscape and sedimentary deposits of Pantanal Basin are “living” geologic records of changing rivers, avulsions, floods, and climate changes that occurred in the last several thousand years. Understanding the dynamics of these transitions is critical for unveiling the geologic history of the world’s largest tropical wetland.

Vegetation Controls on Weathering Intensity during the Last Deglacial Transition in Southeast Africa

Tropical climate is rapidly changing, but the effects of these changes on the geosphere are unknown, despite a likelihood of climatically-induced changes on weathering and erosion. The lack of long, continuous paleo-records prevents an examination of terrestrial responses to climate change with sufficient detail to answer questions about how systems behaved in the past and may alter in the future. We use high-resolution records of pollen, clay mineralogy, and particle size from a drill core from Lake Malawi, southeast Africa, to examine atmosphere-biosphere-geosphere interactions during the last deglaciation (∼18–9 ka), a period of dramatic temperature and hydrologic changes. The results demonstrate that climatic controls on Lake Malawi vegetation are critically important to weathering processes and erosion patterns during the deglaciation. At 18 ka, afromontane forests dominated but were progressively replaced by tropical seasonal forest, as summer rainfall increased. Despite indication of decreased rainfall, drought-intolerant forest persisted through the Younger Dryas (YD) resulting from a shorter dry season. Following the YD, an intensified summer monsoon and increased rainfall seasonality were coeval with forest decline and expansion of drought-tolerant miombo woodland. Clay minerals closely track the vegetation record, with high ratios of kaolinite to smectite (K/S) indicating heavy leaching when forest predominates, despite variable rainfall. In the early Holocene, when rainfall and temperature increased (effective moisture remained low), open woodlands expansion resulted in decreased K/S, suggesting a reduction in chemical weathering intensity. Terrigenous sediment mass accumulation rates also increased, suggesting critical linkages among open vegetation and erosion during intervals of enhanced summer rainfall. This study shows a strong, direct influence of vegetation composition on weathering intensity in the tropics. As climate change will likely impact this interplay between the biosphere and geosphere, tropical landscape change could lead to deleterious effects on soil and water quality in regions with little infrastructure for mitigation.

The Fate of Carbon in Sediments of the Xingu and Tapajós Clearwater Rivers, Eastern Amazon

The Xingu and Tapajos rivers in the eastern Amazon are the largest clearwater systems of the Amazon basin. Both rivers have “fluvial rias” (i.e., lake-like channels) in their downstream reaches as they are naturally impounded by the Amazon mainstem. Fluvial rias are widespread in the Amazon landscape and most of the sedimentary load from the major clearwater and blackwater rivers is deposited in these channels. So far, little is known about the role of Amazon rias as a trap and reactor for organic sediments. In this study, we used organic and inorganic geochemistry, magnetic susceptibility, diatom, and pollen analyses in sediments (suspended, riverbed, and downcore) of the Xingu and Tapajos rias to investigate the effects of hydrologic variations on the carbon budget in these clearwater rivers over the Holocene. Ages of sediment deposition (~100 to 5,500 years) were constrained by optically stimulated luminescence and radiocarbon. Major elements geochemistry and concentration of total organic carbon (TOC) indicate that seasonal hydrologic variations exert a strong influence on riverine productivity and on the input and preservation of organic matter in sediments. Stable carbon isotope data (δ13C from -31.04 to -27.49‰) and pollen analysis indicate that most of the carbon buried in rias is derived from forests. In the Xingu River, diatom analysis in bottom sediments revealed 65 infrageneric taxa that are mostly well-adapted to slack oligotrophic and acidic waters. TOC values in sediment cores are similar to values measured in riverbed sediments and indicate suitable conditions for organic matter preservation in sediments of the Xingu and Tapajos rias at least since the mid-Holocene, with carbon burial rates varying from about 84 g m-2 yr-1 to 169 g m-2 yr-1. However, redox-sensitive elements in sediment core indicate alternation between anoxic/dysoxic and oxic conditions in the water-sediment interface that may be linked to abrupt changes in precipitation. The variation between anoxic/dysoxic and oxic conditions in the water-sediment interface controls organic matter mineralization and methanogenesis. Thus, such changes promoted by hydrological variations significantly affect the capacity of Amazon rias to act either as sources or sinks of carbon.

Lake regionalization and diatom metacommunity structuring in tropical South America

Abstract Lakes and their topological distribution across Earths surface impose ecological and evolutionary constraints on aquatic metacommunities. In this study, we group similar lake ecosystems as metacommunity units influencing diatom community structure. We assembled a database of 195 lakes from the tropical Andes and adjacent lowlands (8°N–30°S and 58–79°W) with associated environmental predictors to examine diatom metacommunity patterns at two different levels: taxon and functional (deconstructed species matrix by ecological guilds). We also derived spatial variables that inherently assessed the relative role of dispersal. Using complementary multivariate statistical techniques (principal component analysis, cluster analysis, nonmetric multidimensional scaling, Procrustes, variance partitioning), we examined diatom–environment relationships among different lake habitats (sediment surface, periphyton, and plankton) and partitioned community variation to evaluate the influence of niche‐ and dispersal‐based assembly processes in diatom metacommunity structure across lake clusters. The results showed a significant association between geographic clusters of lakes based on gradients of climate and landscape configuration and diatom assemblages. Six lake clusters distributed along a latitudinal gradient were identified as functional metacommunity units for diatom communities. Variance partitioning revealed that dispersal mechanisms were a major contributor to diatom metacommunity structure, but in a highly context‐dependent fashion across lake clusters. In the Andean Altiplano and adjacent lowlands of Bolivia, diatom metacommunities are niche assembled but constrained by either dispersal limitation or mass effects, resulting from area, environmental heterogeneity, and ecological guild relationships. Topographic heterogeneity played an important role in structuring planktic diatom metacommunities. We emphasize the value of a guild‐based metacommunity model linked to dispersal for elucidating mechanisms underlying latitudinal gradients in distribution. Our findings reveal the importance of shifts in ecological drivers across climatic and physiographically distinct lake clusters, providing a basis for comparison of broad‐scale community gradients in lake‐rich regions elsewhere. This may help guide future research to explore evolutionary constraints on the rich Neotropical benthic diatom species pool.

East African weathering dynamics controlled by vegetation-climate feedbacks

Tropical weathering has important linkages to global biogeochemistry and landscape evolution in the East African rift. We disentangle the influences of climate and terrestrial vegetation on chemical weathering intensity and erosion at Lake Malawi using a long sediment record. Fossil pollen, microcharcoal, particle size, and mineralogy data affirm that the detrital clays accumulating in deep water within the lake are controlled by feedbacks between climate and hinterland forest composition. Particle-size patterns are also best explained by vegetation, through feedbacks with lake levels, wildfires, and erosion. We develop a new source-to-sink framework that links lacustrine sedimentation to hinterland vegetation in tropical rifts. Our analysis suggests that climate-vegetation interactions and their coupling to weathering/erosion could threaten future food security and has implications for accurately predicting petroleum play elements in continental rift basins.

Late Quaternary lacustrine ostracods (Ostracoda, Crustacea) and charophytes (Charophyta, Charales) from the Puna Plateau, Argentina

Relatively little is known about the recent palaeontological records of the high-altitude closed basin lakes of the Central Andes, but a great need exists to remedy this knowledge gap if microfossils are to be used to infer climatic and ecological transitions from lake sediment cores. Here, eight species of non-marine ostracods and two calcareous algae are recorded from modern sediments and late Quaternary strata from Laguna de los Pozuelos, Jujuy Province, northwestern Argentina. Four species, Limnocythere alexanderi, Limnocythere foresteri, Limnocythere lysandrosi and Limnocythere ruipunctifinalis, are described as new species. Limnocythere titicaca Lerner-Seggev, 1973 has only been recorded in Lake Titicaca prior to this study and this is the first time the species is recognized outside of Bolivia. The cypridoideans Ilyocypris ramirezi Cusminsky & Whatley, 1996, Eucypris virgata Cusminsky & Whatley, 1996 and Chlamydotheca pseudobrasiliensis Martens & Behen 1994 are known species that are rare in the stratigraphic sequence in core LP06-6A. Also, the gyrogonites of two well-known species of Charophyta, Chara filiformis Hertzsch and Chara vulgaris Linnaeus, are occasionally present in the sediment from Laguna de los Pozuelos. The results provide a new vehicle for clarifying the Quaternary palaeohydrological history of the Pozuelos Basin, which is a RAMSAR wetland that is likely to be sensitive to global environmental change.