Mohammad Jane Alam

Anharmonic vibrational studies of L-aspartic acid using HF and DFT calculations.

The experimental and theoretical studies on the structure, molecular properties and vibrational spectra of L-aspartic acid are presented. The molecular structure, harmonic and anharmonic vibrational frequencies, molecular properties, MEP mapping, NBO analysis and electronic spectra of L-aspartic acid have been reported. Computed geometrical parameters and anharmonic frequencies of fundamental, combination and overtone transitions were found in satisfactory agreement with the experimental data. The UV-Vis spectrum of present molecule has been recorded and the electronic properties such as HOMO and LUMO energies and few low lying excited states were carried out by using time dependent density functional theory (TD-DFT) approach. Natural Bond Orbital (NBO) analysis has been performed for analyzing charge delocalization throughout the molecule. Molecular electrostatic potential map has also been used for quantitative measure of the chemical activities of various sites of the molecule.

FTIR, FT-Raman, UV-Visible spectra and quantum chemical calculations of allantoin molecule and its hydrogen bonded dimers.

FTIR, FT-Raman and electronic spectra of allantoin molecule are recorded and investigated using DFT and MP2 methods with 6-311++G(d,p) basis set. The molecular structure, anharmonic vibrational spectra, natural atomic charges, non-linear optical properties, etc. have been computed for the ground state of allantoin. The anharmonic vibrational frequencies are calculated using PT2 algorithm (Barone method) as well as VSCF and CC-VSCF methods. These methods yield results that are in remarkable agreement with the experiment. The coupling strengths between pairs of modes are also calculated using coupling integral based on 2MR-QFF approximation. The simulations on allantoin dimers have been also performed at B3LYP/6-311++G(d,p) level of theory to investigate the effect of the intermolecular interactions on the molecular structure and vibrational frequencies of the monomer. Vibrational assignments are made with the great accuracy using PED calculations and animated modes. The combination and overtone bands have been also identified in the FTIR spectrum with the help of anharmonic computations. The electronic spectra are simulated in gas and solution at TD-B3LYP/6-311++G(d,p) level of theory. The important global quantities such as electro-negativity, electronic chemical potential, electrophilicity index, chemical hardness and softness based on HOMO, LUMO energy eigenvalues are also computed. NBO analysis has been performed for monomer and dimers of allantoin at B3LYP/6-311++G(d,p) level of theory.

Quantum chemical and spectroscopic investigations of 3-methyladenine.

FTIR, FT-Raman and UV-Vis spectra of 3-methyladenine have been recorded and investigated using quantum chemical calculations. The molecular geometry and vibrational spectra of 3-methyladenine in the ground state are computed by using HF and DFT methods with 6-311G(d,p) basis set. VSCF, CC-VSCF methods based on 2MR-QFF and PT2 (Barone method) have been utilized for computing anharmonic vibrational frequencies. These methods yield results that are in remarkable agreement with the experimental data. The magnitudes of coupling between pair of modes have been also computed. Vibrational modes are assigned with the help of visual inspection of atomic displacements. The electronic spectra, simulated at TD-B3LYP/6-311++G(d,p) level of theory, are compared to the experiment. The global quantities: electronic chemical potential, electrophilicity index, chemical hardness and softness based on HOMO and LUMO energy eigenvalues are also computed at B3LYP/6-311++G(d,p) level of theory.

DFT/B3LYP calculations, in vitro cytotoxicity and antioxidant activities of steroidal pyrimidines and their interaction with HSA using molecular docking and multispectroscopic techniques

As a part of our continuing program on the synthesis of steroidal heterocycles, it has been prepared a series of novel steroidal pyrimidine derivatives 4-6via TMSCl, steroidal ketones (1c-3c), urea and benzaldehyde. The systems presented here, are novel scaffolds and have not been described before at 6th position of steroidal-6-one (1c-3c). Structural assignment of newly synthesized compounds was performed by DFT/B3LYP calculations as well as spectral and analytical data. The interactions of compounds (4-6) with HSA were studied by fluorescence spectroscopy, DLS, CD and molecular docking, under imitated physiological conditions. The antitumor activity has been tested in vitro against three cancer cell lines MDA-MB231 (breast carcinoma), HeLa (human cervical carcinoma), HepG2 (hepatic carcinoma) and one non-cancer normal cell lines, PBMCs (peripheral blood mononuclear cell) by MTT assay. In addition, in vitro antioxidant activity and apoptosis assay of the synthesized compounds (4-6) have also been investigated.

The novel iminium surfactant p-benzylidene benzyldodecyl iminium chloride as a corrosion inhibitor for plain carbon steel in 1 M HCl: electrochemical and DFT evaluation

The iminium surfactant p-benzylidene benzyldodecyl iminium chloride was synthesized, characterized and evaluated as a novel corrosion inhibitor for plain carbon steel in 1 M HCl solution at 30, 40, 50 and 60 °C using gravimetric analysis, spectrophotometric analysis of iron ions, potentiodynamic polarization, electrochemical impedance spectroscopy (EIS) and density functional theory (DFT). The evaluated compound acted as an efficient corrosion inhibitor for plain carbon steel in 1 M HCl solution. The inhibition efficiency of the compound increased with an increase in concentration and solution temperature. The iminium surfactant gets adsorbed onto the plain carbon steel surface via mixed types of adsorption with predominantly chemisorption. The adsorption of the inhibitor was found to follow the Langmuir adsorption isotherm. The surface morphology of corroded plain carbon steel in uninhibited and inhibited acid, as investigated by scanning electron microscopy (SEM) and energy dispersive X-ray analysis (EDAX), clearly showed different results. The different quantum chemical parameters were used to correlate the inhibition efficiency of the inhibitor and its molecular structure.

DFT and TD-DFT computation of charge transfer complex between o-phenylenediamine and 3,5-dinitrosalicylic acid

DFT and TD-DFT studies of o-phenylenediamine (PDA), 3,5-dinitrosalicylic acid (DNSA) and their charge transfer complex have been carried out at B3LYP/6-311G(d,p) level of theory. Molecular geometry and various other molecular properties like natural atomic charges, ionization potential, electron affinity, band gap, natural bond orbital (NBO) and frontier molecular analysis have been presented at same level of theory. Frontier molecular orbital and natural bond orbital analysis show the charge delocalization from PDA to DNSA.

Vibrational and electronic spectral analysis of 2,3-pyrazinedicarboxylic acid: A combined experimental and theoretical study

ABSTRACT Fourier transform infrared and Raman spectra of 2,3-pyrazinedicarboxylic acid were recorded and analyzed using density functional theory. The complete assignments of the anharmonic vibrational modes have been performed based on potential energy distribution. The anharmonic frequencies were computed using vibrational second-order perturbation theory as well as vibrational self-consistent field and correlation corrected vibrational self-consistent field methods. Mode–mode coupling strength is also estimated using two-mode representation of quartic force field approximation. The intra- and intermolecular interactions were also studied in the dimer and trimer forms of the title molecule. The ultraviolet–visible absorption spectra in ethanol, methanol, and acetonitrile solvents were recorded and analyzed using time-dependent density functional theory involving the polarization continuum model. The observed and calculated results are well comparable. Molecular electrostatic potential and the highest occupied and the lowest unoccupied molecular orbital analyses are also reported.

Electron impact ionisation cross section for organoplatinum compounds

ABSTRACT This article reports electron impact ionisation cross sections for platinum-based drugs viz., cisplatin (H6N2Cl2Pt), carboplatin (C6H12N2O4Pt), oxaliplatin (C8H14N2O4Pt), nedaplatin (C2H8N2O3Pt) and satraplatin (C10H22ClN2O4Pt) complexes used in the cancer chemotherapy. The multi-scattering centre spherical complex optical potential formalism is used to obtain the inelastic cross section for these large molecules upon electron impact. The ionisation cross section is derived from the inelastic cross section employing complex scattering potential–ionisation contribution method. Comparison is made with previous results, where ever available and overall a reasonable agreement is observed. This is the first attempt to report total ionisation cross sections for nedaplatin and satraplatin complexes.

Rock mass rating and Kinematic analysis for slope stability investigation of Utari dam, Lalitpur district, Uttar Pradesh

Rock mass characterization of Utari dam in Lalitpur district of Uttar Pradesh was done to identify different stability classes of rock mass. For better stability of Utari dam, foundation conditions were carefully studied by detailed field investigations of the site supplemented by laboratory tests. During feasibility and preliminary stages, rock mass characterization of slopes was conducted to identify the vulnerable zones of failure. Rock mass characterization was done by compilation of information obtained from intact rock as well as from rock mass to determine its grade and long term slope stability of the site. On the basis of Rock Mass Rating (RMR) and Geological Strength Index (GSI) slope stability is identified which lies under good quality rock mass. Kinematic analysis was conducted to find out the probability for different types of structurally controlled slope failure. Microscopic analyses were conducted to identify the degree of chemical alteration of feldspar. Clay formation by sericitization along joint planes is harmful for the stability of dam structure. Remedial measures must be taken to reduce the extent of chemical alteration. Granitoids at dam site forms a compact and stable foundation consisting of four sets of joints in which two sets were prominent which are dipping on the upstream side of the dam which reveals good condition on the dam site as leakage from reservoir will be minimum and least up-thrust on the dam structure.

Anharmonic vibrational spectra and mode-mode couplings analysis of 2-aminopyridine

Vibrational spectra of 2-aminopyridine (2AP) have been analyzed using the vibrational self-consistence field theory (VSCF), correlated corrected vibrational self-consistence field theory (CC-VSCF) and vibrational perturbation theory (VPT2) at B3LYP/6-311G(d,p) framework. The mode-mode couplings affect the vibrational frequencies and intensities. The coupling integrals between pairs of normal modes have been obtained on the basis of quartic force field (2MR-QFF) approximation. The overtone and combination bands are also assigned in the FTIR spectrum with the help of anharmonic calculation at VPT2 method. A statistical analysis of deviations shows that estimated anharmonic frequencies are closer to the experiment over harmonic approximation. Furthermore, the anharmonic correction has also been carried out for the dimeric structure of 2AP. The fundamental vibration bands have been assigned on the basis of potential energy distribution (PED) and visual look over the animated modes. Other important molecular properties such as frontier molecular orbitals and molecular electrostatics potential mapping have also been analyzed.