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Dive into the research topics where Murugaeson R. Kumar is active.

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Featured researches published by Murugaeson R. Kumar.


Inorganic Chemistry | 2010

Reactions of HNO with heme proteins: new routes to HNO-heme complexes and insight into physiological effects

Murugaeson R. Kumar; Jon M. Fukuto; Katrina M. Miranda; Patrick J. Farmer

The formation and interconversion of nitrogen oxides has been of interest in numerous contexts for decades. Early studies focused on gas-phase reactions, particularly with regard to industrial and atmospheric environments, and on nitrogen fixation. Additionally, investigation of the coordination chemistry of nitric oxide (NO) with hemoglobin dates back nearly a century. With the discovery in the early 1980s that NO is biosynthesized as a molecular signaling agent, the literature has been focused on the biological effects of nitrogen oxides, but the original concerns remain relevant. For instance, hemoglobin has long been known to react with nitrite, but this reductase activity has recently been considered to be important to produce NO under hypoxic conditions. The association of nitrosyl hydride (HNO; also commonly referred to as nitroxyl) with heme proteins can also produce NO by reductive nitrosylation. Furthermore, HNO is considered to be an intermediate in bacterial denitrification, but conclusive identification has been elusive. The authors of this article have approached the bioinorganic chemistry of HNO from different perspectives, which have converged because heme proteins are important biological targets of HNO.


Proceedings of the National Academy of Sciences of the United States of America | 2011

Nitrosyl hydride (HNO) replaces dioxygen in nitroxygenase activity of manganese quercetin dioxygenase

Murugaeson R. Kumar; Adrian Zapata; Alejandro J. Ramirez; Sara K. Bowen; Wilson A. Francisco; Patrick J. Farmer

Quercetin dioxygenase (QDO) catalyzes the oxidation of the flavonol quercetin with dioxygen, cleaving the central heterocyclic ring and releasing CO. The QDO from Bacillus subtilis is unusual in that it has been shown to be active with several divalent metal cofactors such as Fe, Mn, and Co. Previous comparison of the catalytic activities suggest that Mn(II) is the preferred cofactor for this enzyme. We herein report the unprecedented substitution of nitrosyl hydride (HNO) for dioxygen in the activity of Mn-QDO, resulting in the incorporation of both N and O atoms into the product. Turnover is demonstrated by consumption of quercetin and other related substrates under anaerobic conditions in the presence of HNO-releasing compounds and the enzyme. As with dioxygenase activity, a nonenzymatic base-catalyzed reaction of quercetin with HNO is observed above pH 7, but no enhancement of this basal reactivity is found upon addition of divalent metal salts. Unique and regioselective N-containing products (14N/15N) have been characterized by MS analysis for both the enzymatic and nonenzymatic reactions. Of the several metallo-QDO enzymes examined for nitroxygenase activity under anaerobic condition, only the Mn(II) is active; the Fe(II) and Co(II) substituted enzymes show little or no activity. This result represents an enzymatic catalysis which we denote nitroxygenase activity; the unique reactivity of the Mn-QDO suggests a metal-mediated electron transfer mechanism rather than metal activation of the substrate’s inherent base-catalyzed reactivity.


Journal of Inorganic Biochemistry | 2013

A singular value decomposition approach for kinetic analysis of reactions of HNO with myoglobin.

Adrian Zapata; Murugaeson R. Kumar; Dmitry Pervitsky; Patrick J. Farmer

The reactions of several horse heart myoglobin species with nitrosyl hydride, HNO, derived from Angelis salt (AS) and Pilotys acid (PA) have been followed by UV-visible, (1)H NMR and EPR spectroscopies. Spectral analysis of myoglobin-derived speciation during the reactions was obtained by using singular value decomposition methods combined with a global analysis to obtain the rate constants of complex sequential reactions. The analysis also provided spectra for the derived absorbers, which allowed self-consistent calibration to the spectra of known myoglobin species. Using this method, the determined rate for trapping of HNO by metmyoglobin, which produces NO-myoglobin, is found to be 2.7 × 10(5)M(-1)s(-1) at pH7.0 and 1.1 × 10(5)M(-1)s(-1) at pH9.4. The reaction of deoxymyoglobin with HNO generates the adduct HNO-myoglobin directly, but is followed by a secondary reaction of that product with HNO yielding NO-myoglobin; the determined bimolecular rate constants for these reactions are 3.7 × 10(5)M(-1)s(-1) and 1.67 × 10(4)M(-1)s(-1) respectively, and are independent of pH. The derived spectrum for HNO-myoglobin is characterized by a Soret absorbance maximum at 423 nm with an extinction coefficient of 1.66 × 10(5)M(-1)cm(-1). The rate constant for unimolecular loss of HNO from HNO-myoglobin was determined by competitive trapping with CO at 8.9 × 10(-5)s(-1), which gives the thermodynamic binding affinity of HNO to deoxymyoglobin as 4.2 × 10(9)M(-1). These results suggest that the formation of HNO-ferrous heme protein adducts represents an important consideration in the biological action of HNO-releasing drugs.


Redox biology | 2018

Chemical trapping and characterization of small oxoacids of sulfur (SOS) generated in aqueous oxidations of H 2 S

Murugaeson R. Kumar; Patrick J. Farmer

Small oxoacids of sulfur (SOS) are elusive molecules like sulfenic acid, HSOH, and sulfinic acid, HS(O)OH, generated during the oxidation of hydrogen sulfide, H2S, in aqueous solution. Unlike their alkyl homologs, there is a little data on their generation and speciation during H2S oxidation. These SOS may exhibit both nucleophilic and electrophilic reactivity, which we attribute to interconversion between S(II) and S(IV) tautomers. We find that SOS may be trapped in situ by derivatization with nucleophilic and electrophilic trapping agents and then characterized by high resolution LC MS. In this report, we compare SOS formation from H2S oxidation by a variety of biologically relevant oxidants. These SOS appear relatively long lived in aqueous solution, and thus may be involved in the observed physiological effects of H2S.


Nitric Oxide | 2018

The reaction between GSNO and H 2 S: On the generation of NO, HNO and N 2 O

Murugaeson R. Kumar; Tara Clover; Abayomi D. Olaitan; Christopher Becker; Touradj Solouki; Patrick J. Farmer

Several recent reports suggest that HNO may be produced endogenously by reaction of H2S and S-nitrosoglutathione (GSNO). This hypothesis was tested using deoxymyoglobin (MbFeII) to trap the expected HNO released from the target reaction, which should generate the stable HNO adduct, HNO-Mb, under anaerobic conditions. Under numerous experimental conditions, the sole globin product was NO-Mb, as characterized by absorbance, EPR, and NMR spectroscopies. Analogous reactions of GSNO with other biological reductants such as ascorbic acid, dithiothreitol, glutathione, and dithionite also yielded NO-Mb as the sole globin product; however, whereas analogous reduction of GSNO using NaBH4 generates HNO-Mb in high yield. Quantitative GC/MS analyses of reactions of GS15NO with H2S showed that the main reaction product was 15NO, with 15N2 produced at a comparable level to 15N2O. Overall yield of N2O is unchanged by the presence of MbFeII, discounting the intermediacy of either NO or HNO in its formation. Taken together, these results argue against the generation of free HNO as a major pathway in the reactions of GSNO with H2S, and instead imply some as yet uncharacterized intermediates generate the nitrogenic gases.


The Chemistry and Biology of Nitroxyl (HNO) | 2017

HNO as an Oxygen Substitute in Enzymes

Xiaozhen Han; Murugaeson R. Kumar; Patrick J. Farmer

Abstract Dioxygenase enzymes catalyze the degradation of substrates by incorporating both atoms of dioxygen. HNO, nitroxyl or azanone, is isoelectronic with 1O2 and it is efficiently trapped by O2-binding proteins like myoglobin and hemoglobins. Indeed, HNO may act as a substrate for enzymes in the place of O2 or its congeners, as has been seen in the nitroxygenase activity of a Mn dioxygenase, quercetin 2,3-dioxygenase, Mn-QDO. The observed nitroxygenase reactivity results in the incorporation of both N and O into the product; a similar noncatalytic reaction producing the same product is observed at high pH in the absence of enzyme. In this work, we report kinetic analysis of both enzymatic and nonenzymatic reactivities with a series of flavonols (Hflas). The possible involvement of a quinone methide tautomer of the Hfla substrates rationalizes the site of nitroxyl N-atom incorporation into the product.


Tetrahedron Letters | 2016

Nitroxygenation of quercetin by HNO

Xiaozhen Han; Murugaeson R. Kumar; Patrick J. Farmer


The Chemistry and Biology of Nitroxyl (HNO) | 2017

Global Kinetic Analysis and Singular Value Decomposition Methods Applied to Complex Multicomponent Reactions of HNO

Adrian Zapata; Murugaeson R. Kumar; Patrick J. Farmer


Inorganic Chemistry | 2018

Mechanistic Investigations of Photoinduced Oxygenation of Ru(II) Bis-bipyridyl Flavonolate Complexes

Xiaozhen Han; Murugaeson R. Kumar; Amanda Hoogerbrugge; Kevin K. Klausmeyer; Mukunda M. Ghimire; Lauren M. Harris; Mohammad A. Omary; Patrick J. Farmer


Free Radical Biology and Medicine | 2017

Chemical Trapping and Characterization of small Oxoacids of Sulfur (SOS) and Selenium (SOSe) Generated in Aqueous Oxidations of H 2 S and H 2 Se

Murugaeson R. Kumar; Patrick J. Farmer

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