Nagamitsu Maie

Spatial and temporal variations in DOM composition in ecosystems: The importance of long‐term monitoring of optical properties

[1] Source, transformation, and preservation mechanisms of dissolved organic matter (DOM) remain elemental questions in contemporary marine and aquatic sciences and represent a missing link in models of global elemental cycles. Although the chemical character of DOM is central to its fate in the global carbon cycle, DOM characterizations in long-term ecological research programs are rarely performed. We analyzed the variability in the quality of 134 DOM samples collected from 12 Long Term Ecological Research stations by quantification of organic carbon and nitrogen concentration in addition to analysis of UV-visible absorbance and fluorescence spectra. The fluorescence spectra were further characterized by parallel factor analysis. There was a large range in both concentration and quality of the DOM, with the dissolved organic carbon (DOC) concentration ranging from less than 1 mgC/L to over 30 mgC/L. The ranges of specific UV absorbance and fluorescence parameters suggested significant variations in DOM composition within a specific study area, on both spatial and temporal scales. There was no correlation between DOC concentration and any DOM quality parameter, illustrating that comparing across biomes, large variations in DOM quality are not necessarily associated with corresponding large ranges in DOC concentrations. The data presented here emphasize that optical properties of DOM can be highly variable and controlled by different physical (e.g., hydrology), chemical (e.g., photoreactivity/redox conditions), and biological (e.g., primary productivity) processes, and as such can have important ecological consequences. This study demonstrates that relatively simple DOM absorbance and/or fluorescence measurements can be incorporated into long-term ecological research and monitoring programs, resulting in advanced understanding of organic matter dynamics in aquatic ecosystems.

Dissolved Organic Matter Characteristics Across a Subtropical Wetland’s Landscape: Application of Optical Properties in the Assessment of Environmental Dynamics

Wetlands are known to be important sources of dissolved organic matter (DOM) to rivers and coastal environments. However, the environmental dynamics of DOM within wetlands have not been well documented on large spatial scales. To better assess DOM dynamics within large wetlands, we determined high resolution spatial distributions of dissolved organic carbon (DOC) concentrations and DOM quality by excitation–emission matrix spectroscopy combined with parallel factor analysis (EEM–PARAFAC) in a subtropical freshwater wetland, the Everglades, Florida, USA. DOC concentrations decreased from north to south along the general water flow path and were linearly correlated with chloride concentration, a tracer of water derived from the Everglades Agricultural Area (EAA), suggesting that agricultural activities are directly or indirectly a major source of DOM in the Everglades. The optical properties of DOM, however, also changed successively along the water flow path from high molecular weight, peat-soil and highly oxidized agricultural soil-derived DOM to the north, to lower molecular weight, biologically produced DOM to the south. These results suggest that even though DOC concentration seems to be distributed conservatively, DOM sources and diagenetic processing can be dynamic throughout wetland landscapes. As such, EEM–PARAFAC clearly revealed that humic-enriched DOM from the EAA is gradually replaced by microbial- and plant-derived DOM along the general water flow path, while additional humic-like contributions are added from marsh soils. Results presented here indicate that both hydrology and primary productivity are important drivers controlling DOM dynamics in large wetlands. The biogeochemical processes controlling the DOM composition are complex and merit further investigation.

MALDI-TOF mass spectrometry and PSD fragmentation as means for the analysis of condensed tannins in plant leaves and needles

MALDI-TOF mass spectrometry and 13C NMR spectroscopy were applied to unveil typical characteristics of condensed tannins of leaves and needles from willow (Salix alba), spruce (Picea abies) and beech (Fagus sylvatica) of three tree species that are ubiquitous in German forests and landscapes. For further evaluation, lime (Tilia cordata) was included. The 13C NMR spectroscopy confirmed the purity of the condensed tannin fractions and the efficiency of the procedure used for their extraction. While signals representative for procyanidin units are observable in all liquid-state 13C NMR spectra, resonance lines of prodelphinidin were only detected in those obtained from the condensed tannins of spruce needles and beech leaves. Typical signals in the chemical shift region between 70 and 90 ppm demonstrated the presence of stereoisomers (catechin/epicatechin; gallocatechin/ epigallocatechin). The MALDI-TOF mass spectra of the condensed tannins show signals of polymers of up to undecamers. Supporting the observations from the NMR spectroscopy, the mass spectra of the willow and lime leaf condensed tannins were identified as polymers with mainly procyanidin units, while the polymers of the spruce needle and beech leaves exhibit varying procyanidin/prodelphinidin ratios. Post source decay (PSD) fragmentation lead to a sequential loss of monomers and allowed a detailed characterization and sequencing of individual chains. In the case of the condensed tannins of lime this technique clearly excludes a pelargonidin terminal unit followed by a prodelphinidin unit, which would result in the same molecular masses as a polymer solely built up of procyanidin units.

Molecular characterization of dissolved organic matter in freshwater wetlands of the Florida Everglades.

In this study, the molecular composition of dissolved organic matter (DOM), collected from wetlands of the Southern Everglades, was examined using a variety of analytical techniques in order to characterize its sources and transformation in the environment. The methods applied for the characterization of DOM included fluorescence spectroscopy, solid state 13C CPMAS NMR spectroscopy, and pyrolysis-GC/MS. The relative abundance of protein-like components and carbohydrates increased from the canal site to more remote freshwater marsh sites suggesting that significant amounts of non-humic DOM are autochthonously produced within the freshwater marshes, and are not exclusively introduced through canal inputs. Such in situ DOM production is important when considering how DOM from canals is processed and transported to downstream estuaries of Florida Bay.

Changes in the structure and protein binding ability of condensed tannins during decomposition of fresh needles and leaves

Abstract Alterations of the chemical structure of condensed tannins (CT) during decomposition of Norway spruce ( Picea abies ) needles and white willow ( Salix alba ) leaves were investigated by gel permeation chromatography (GPC), 13 C nuclear magnetic resonance (NMR) spectroscopy, and matrix-assisted laser desorption/ionization time of flight (MALDI-TOF) mass spectrometry (MS). The effect of these alterations on their protein binding capacity was determined by radial diffusion assay on an agarose plate. For these studies an incubation experiment was performed with spruce needles and willow leaves. From the fresh foliage and its decomposed materials obtained after 4-days, and 1-, 2-, 4-, and 8-weeks of incubation, CT were extracted and analyzed. Dynamics of CT alterations during decomposition of the fresh foliage were different for the two plant species, although the amount of extractable CT for both decreased soon after incubation and only slight amounts of CT were extractable after 8 weeks of incubation. The decrease was faster for the willow leaves than for the spruce needles. Solution 13 C NMR revealed alterations of CT isolated from both degrading plant materials, but only to a small extent. However, considerable changes in chemical composition and chain length of the CT were detected by MALDI-TOF MS. Changes in the chemical composition of CT are expected to decrease the protein binding capacity. Applying the radial diffusion assay, this assumption was confirmed for spruce CT, but not for willow CT. This may be explained by (1) higher reactivity of prodelphinidin (PD) than procyanidin (PC), the former is contained in spruce CT but not in willow CT and (2) the slower decomposition rate of spruce needles than willow leaves. Thus, CT in spruce needles may have suffered a greater extent of chemical alteration, which formed partially altered CT with less protein binding capacity. Further, since the decomposition rate of spruce needles was slower than that of willow leaves, the partially altered CT remained extractable for a longer incubation period compared with the willow leaves CT.

Spatial, geomorphological, and seasonal variability of CDOM in estuaries of the Florida Coastal Everglades

This paper demonstrates the usefulness of fluorescence techniques for long-term monitoring and assessment of the dynamics (sources, transport and fate) of chromophoric dissolved organic matter (CDOM) in highly compartmentalized estuarine regions with non-point water sources. Water samples were collected monthly from a total of 73 sampling stations in the Florida Coastal Everglades (FCE) estuaries during 2001 and 2002. Spatial and seasonal variability of CDOM characteristics were investigated for geomorphologically distinct sub-regions within Florida Bay (FB), the Ten Thousand Islands (TTI), and Whitewater Bay (WWB). These variations were observed in both quantity and quality of CDOM. TOC concentrations in the FCE estuaries were generally higher during the wet season (June–October), reflecting high freshwater loadings from the Everglades in TTI, and a high primary productivity of marine biomass in FB. Fluorescence parameters suggested that the CDOM in FB is mainly of marine/microbial origin, while for TTI and WWB a terrestrial origin from Everglades marsh plants and mangroves was evident. Variations in CDOM quality seemed mainly controlled by tidal exchange/mixing of Everglades freshwater with Florida Shelf waters, tidally controlled releases of CDOM from fringe mangroves, primary productivity of marine vegetation in FB and diagenetic processes such as photodegradation (particularly for WWB). The source and dynamics of CDOM in these subtropical estuaries is complex and found to be influenced by many factors including hydrology, geomorphology, vegetation cover, landuse and biogeochemical processes. Simple, easy to measure, high sample throughput fluorescence parameters for surface waters can add valuable information on CDOM dynamics to long-term water quality studies which can not be obtained from quantitative determinations alone.

Comparison of chemical characteristics of Type A humic acids extracted from subsoils of paddy fields and surface ando soils

Abstract Chemical characteristics of highly humified humic acids (Type A HAs) from the subsoil of paddy fields (paddy soil HAs) and from the surface layer of ando soils (ando soil HAs) were compared based on the analyses of elemental composition, molecular size distribution, and 13C CPMAS NMR spectra. Humic acids were extracted successively with 0.1 M NaOH and 0.1 M Na4P2O7. The results showed that paddy soil HAs were less oxidized or more decarboxylated than the ando soil HAs. Except O/C value, all the average values for the properties (e.g. C%, Mw, and alkyl C%) did not differ significantly between paddy soil HAs and ando soil HAs. Almost all the chemical characteristics were correlated with RF value, which was an index of degree of humification, based on their spectrophotometric properties. The slopes of derived regression lines obtained from RF (independent variables) vs. C%, H%, H/C value, unsaturated degree, weight average molecular weight, and percentage of each C species (dependent variables) differed significantly between paddy soil HAs and ando soil HAs. Therefore, their chemical structures were considered to differ from each other. Type A HAs with RF=100 from ando soils consisted of both the highly and lowly humified HA molecules in blended and/or combined forms, while those from paddy soils were less heterogeneous. Chemical properties of Type A HAs with RF=180 from paddy soils were rather similar to those from ando soils, although the carbonyl C content was noticeably lower than that of ando soil HAs. Ando soils have lost their non-humic components during the advance in the degree of humification, while conjugated electron transfer system of humic substances developed as well as the loss of non-humic components in paddy soil HAs.

Spatial and temporal variability of dissolved organic matter quantity and composition in an oligotrophic subtropical coastal wetland

Dissolved organic matter (DOM) is an essential component of the carbon cycle and a critical driver in controlling variety of biogeochemical and ecological processes in wetlands. The quality of this DOM as it relates to composition and reactivity is directly related to its sources and may vary on temporal and spatial scales. However, large scale, long-term studies of DOM dynamics in wetlands are still scarce in the literature. Here we present a multi-year DOM characterization study for monthly surface water samples collected at 14 sampling stations along two transects within the greater Everglades, a subtropical, oligotrophic, coastal freshwater wetland-mangrove-estuarine ecosystem. In an attempt to assess quantitative and qualitative variations of DOM on both spatial and temporal scales, we determined dissolved organic carbon (DOC) values and DOM optical properties, respectively. DOM quality was assessed using, excitation emission matrix (EEM) fluorescence coupled with parallel factor analysis (PARAFAC). Variations of the PARAFAC components abundance and composition were clearly observed on spatial and seasonal scales. Dry versus wet season DOC concentrations were affected by dry-down and re-wetting processes in the freshwater marshes, while DOM compositional features were controlled by soil and higher plant versus periphyton sources respectively. Peat-soil based freshwater marsh sites could be clearly differentiated from marl-soil based sites based on EEM–PARAFAC data. Freshwater marsh DOM was enriched in higher plant and soil-derived humic-like compounds, compared to estuarine sites which were more controlled by algae- and microbial-derived inputs. DOM from fringe mangrove sites could be differentiated between tidally influenced sites and sites exposed to long inundation periods. As such coastal estuarine sites were significantly controlled by hydrology, while DOM dynamics in Florida Bay were seasonally driven by both primary productivity and hydrology. This study exemplifies the application of long term optical properties monitoring as an effective technique to investigate DOM dynamics in aquatic ecosystems. The work presented here also serves as a pre-restoration condition dataset for DOM in the context of the Comprehensive Everglades Restoration Plan (CERP).

Microbiota responsible for the decomposition of rice straw in a submerged paddy soil estimated from phospholipid fatty acid composition

Abstract To identify the microbiota responsible for rice straw decomposition in submerged paddy soils, phospholipid fatty acids (PLFAs) in decomposing rice straw (RS) under submerged incubation conditions with changes in the incubation temperature (22 and 30°C) and nitrogen status (without N amendment, and with ammonium sulfate or urea amendment) were determined. Straight, saturated PLFAs, especially 16 : 0 PLFA, predominated in the RS before decomposition in soil, and they accounted for 65% of the total PLFAs in RS, followed by straight, mono-unsaturated PLFAs (27%). The percentages of straight, saturated PLFAs and straight, mono-unsaturated PLFAs in RS decreased with the decomposition to the levels of 36 to 44% for the straight, saturated PLFAs and of 12 to 16% for the straight, mono-unsaturated PLFAs, while the percentages of branched-chain PLFAs increased markedly from 2% to the level of 40 to 46%, irrespective of the incubation temperature and nitrogen status, which indicated that Gram-positive bacteria were mainly responsible for the RS decomposition in the submerged paddy soil. Microbial succession in the decomposition process of RS was inferred based on cluster analysis and principal component analysis. The stress factor estimated from the trans/cis ratio of 16 : 1ω7 PLFA in the RS undergoing decomposition ranged from 0.21 to 0.40 at 22°C, and from 0.27 to 0.58 at 30°C irrespective of the nitrogen status, indicating that decomposing RS was a highly stressed environment for the microorganisms inhabiting within RS.

Changes in the quality of chromophoric dissolved organic matter leached from senescent leaf litter during the early decomposition.

Chromophoric dissolved organic matter (CDOM) leached from leaf litter is a major source of humus in mineral soil of forest ecosystems. While their functions and refractoriness depend on the physicochemical structure, there is little information on the quality of CDOM, especially for that leached in the very early stages of litter decomposition when a large amount of dissolved organic matter (DOM) is leached. This study aimed to better understand the variations/changes in the composition of CDOM leached from senescent leaf litter from two tree species during the early stage of decomposition. Leaf litter from a conifer tree (Japanese cedar, D. Don) and a deciduous broad-leaved tree (Konara oak, Thunb.) were incubated in columns using simulated rainfall events periodically for a total of 300 d at 20°C. The quality of CDOM was investigated based on the fluorescence properties by using a combination of excitation-emission matrix fluorescence (EEM) and parallel factor analysis (PARAFAC). In addition, the phenolic composition of DOM was investigated at a molecular level by thermally assisted hydrolysis and methylation-gas chromatography-mass spectrometry (THM-GC-MS) in the presence of tetramethylammonium hydroxide (TMAH). The EEM was statistically decomposed into eight fluorescence components (two tannin/peptide-like peaks, one protein-like peak, and five humic-like peaks). A significant contribution of tannin/peptide-like peaks was observed at the beginning of incubation, but these peaks decreased quickly and humic-like peaks increased within 1 mo of incubation. The composition of humic-like peaks was different between tree species and changed over the incubation period. Since tannin-derived phenolic compounds were detected in the DOM collected after 254 d of incubation on THM-GC-MS, it was suggested that tannins partially changed its structure, forming various humic-like peaks during the early decomposition.