Naofumi Nomura
Kyoto University
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Featured researches published by Naofumi Nomura.
Ecological Research | 2003
Naofumi Nomura; Kihachiro Kikuzawa
Phenological responses of leaves and roots were studied in the tropical montane forests of Mount Kinabalu, Borneo. Soil nutrient supply, in addition to the supply of light and water, is a potential abiotic factor influencing plant phenology in the tropics. The main objective of this study was to evaluate the contribution of soil nutrient supply to plant productive phenology. Fertilization experiments, including controls, nitrogen fertilized and nitrogen and phosphorus fertilized treatments, were conducted on three vegetation types in different moisture environments. Responses of leaves and roots were compared among treatments and among vegetation types. Leaf flushing was induced by nitrogen fertilization in the upper montane forest, where extremely wet moisture conditions are associated with cloud cover. This induction of leaf flushing by fertilization was not observed in the other forests. Root growth was suppressed by fertilization when leaf flushing was not induced by fertilization. These results indicate that soil pulsed nutrient release could be a cue for leaf flushing in a tropical wet environment, and that leaf phenology could be regulated by external abiotic factors and root phenology could be regulated by internal plant demands.
Journal of Plant Research | 2006
Naofumi Nomura; Hiroaki Setoguchi; Tokushiro Takaso
We investigated the anatomical and physiological characteristics of stenophyllous leaves of a rheophyte, Farfugium japonicum var. luchuence, and sun and shade leaves of a non-rheophyte, F. japonicum, comparing three different populations from coastal, forest floor, and riparian habitats. Light adaptation resulted in smaller leaves, and riparian adaptation resulted in narrower leaves (stenophylly). The light-saturated rate of photosynthesis (Pmax) per unit leaf area corresponded to the light availability of the habitat. Irrespective of leaf size, the Pmax per unit leaf mass was similar for sun and shade leaves. However, the Pmax per mass of stenophyllous leaves was significantly lower than that of sun and shade leaves. This was because the number and size of mesophyll cells were greater than that required for intercellular CO2 diffusion, which resulted in a larger leaf mass per unit leaf area. Higher cell density increases contact between mesophyll cells and enhances leaf toughness. Stenophyllous leaves of the rheophyte are frequently exposed to a strong water flow when the water level rises, suggesting a mechanical constraint caused by physical stress.
Evolution | 2011
Yuki Mitsui; Naofumi Nomura; Yuji Isagi; Hiroshi Tobe; Hiroaki Setoguchi
Understanding the role of habitat‐associated adaptation in reducing gene flow resulting in population differentiation and speciation is a major issue in evolutionary biology. We demonstrate a significant role for habitat divergence in species isolation between two naturally hybridizing riparian and nonriparian plants, Ainsliaea faurieana and A. apiculata (Asteraceae), on Yakushima Island, Japan. By analyzing the fine‐scale population structure at six sympatric sites, we found that variations in leaf shape, geography, light conditions, and genotype were strongly correlated across riverbank–forest transitions. No evidence of effective gene flow was found between the two species across the majority of the transition zones, although the NewHybrid clustering analysis confirmed interspecific hybridization. However, a relatively high level of gene flow was observed across one zone with a more diffuse ecotone and intermediate flooding and light conditions, possibly generated by human disturbances. These results suggest that the barriers to gene flow between the riparian and forest species are primarily ecological. Additional common garden experiments indicated that the two species are adaptively differentiated to contrasting flooding and light environments. Overall, our study suggests that adaptations to different habitats can lead to the formation of reproductive isolating barriers and the maintenance of distinct species boundaries.
Annals of Botany | 2010
Naofumi Nomura; Tokushiro Takaso; Ching-I Peng; Yoshiko Kono; Kazuo Oginuma; Yuki Mitsui; Hiroaki Setoguchi
BACKGROUND AND AIMS Farfugium (Asteraceae) is a small genus that contains the two species F. japonicum and F. hiberniflorum and is distributed along a long archipelago in east Asia. The common taxon, F. japonicum, includes three varieties associated with a wide range of habitats, including forest understorey (sciophytes), coastal crag (heliophytes) and riverbed (rheophytes). Leaf shape is an important taxonomic character within this genus and is associated with the habitat. METHODS Twenty populations that included all Farfugium taxa were collected throughout its range. Leaf morphology was measured to determine differences amongst the taxa. Phylogenetic analyses based on sequences of the internal transcribed spacer of nuclear rDNA and four plastid DNA regions (matK, trnL-trnF, trnH-psbA and rpl20-rps12) were conducted separately. KEY RESULTS Leaf morphology was significantly different amongst taxa, but morphological variations were partly explained by adaptation to certain environmental conditions that each population inhabited. Molecular phylogenies for the nDNA internal transcribed spacer and cpDNA were consistent in classifying F. hiberniflorum and the Taiwanese var. formosanum, whilst suggesting polyphyletic origins for the rheophyte, sciophyte and heliophyte taxa. All samples from the southern Ryukyus (Japan) and Taiwan clustered into a monophyletic group, which corroborates the land configuration theory involving Quaternary land-bridge formation and subsequent fragmentation into islands. The incongruence between the two DNA datasets may imply traces of introgressive hybridization and/or incomplete lineage sorting. CONCLUSIONS The occurrence of rheophyte, sciophyte and heliophyte plants within Farfugium may be attributable to their isolation on islands and subsequent adaptation to the riparian, coastal crag and forest understorey environments, following their migration over the Quaternary land-bridge formation along their distribution range. Nearly identical DNA sequences coupled with highly divergent morphologies amongst these taxa suggest that diversification was rapid.
Botany | 2007
Naofumi Nomura; Hiroaki Setoguchi; Keiko YasudaK. Yasuda; Tokushiro Takaso
Farfugium japonicum (L.f.) Kitam., a facultative rheophyte occupying both dryland and riparian habitats within the species range, exhibits various shapes of leaves ranging from stenophyllous to round. The present study assesses variability in leaf morphology (five leaf characters) and genetics (305 AFLP markers) for populations from dryland and riparian habitats on Yaeyama Islands, Japan. Results from the two datasets produced somewhat different patterns indicating that selection for habitat type is effective on leaf shape attributes, while lack of differentiation was observed for neutral markers caused by extensive gene flow. Leaf-shape attributes were clustered into three groups: shade (round), sun (round), and narrow (stenophyllous) leaves. Narrow leaves were only found in riparian populations, indicating that flood intensity acts as a selective agent for this attribute. Although high within-population variation was demonstrated by AMOVA, the populations were distinct enough to be classified in separat...
Conservation Genetics | 2011
Hiroaki Setoguchi; Yuki Mitsui; Hajime Ikeda; Naofumi Nomura; Atsushi Tamura
Journal of Plant Research | 2013
Naofumi Nomura; Yuki Ogura-Tsujita; Stephan W. Gale; Ayako Maeda; Hidetaka Umata; Kentaro Hosaka; Tomohisa Yukawa
Weed Biology and Management | 2011
Yuko Shimamoto; Naofumi Nomura; Tokushiro Takaso; Hiroaki Setoguchi
Conservation Genetics | 2009
Asuka Noda; Naofumi Nomura; Yuki Mitsui; Hiroaki Setoguchi
Conservation Genetics | 2009
Hiroaki Setoguchi; Yuki Mitsui; Hajime Ikeda; Naofumi Nomura; Atsushi Tamura