Nathan A. Seifert

Structures of Cage, Prism, and Book Isomers of Water Hexamer from Broadband Rotational Spectroscopy

Cage, Book, and Prism The array of hydrogen bonds governing the extended structure of liquid water is so intricate that chemists have often sought to understand it by studying simpler clusters. Even so, it has been challenging to get a handle on the preferred arrangement adopted by just six water molecules. Interdependent theoretical and spectroscopic studies have narrowed down the lowest-energy hexamer structures to three isomers—respectively designated the cage, the book, and the prism—but their relative energies remain uncertain. Now, Pérez et al. (p. 897; see the Perspective by Saykally and Wales) have observed all three isomers in a single experiment, using Fourier transform microwave spectroscopy, and were able to establish definitively their energy ordering. Observing three distinct water clusters in the same experiment resolves long-standing questions about their relative stabilities. Theory predicts the water hexamer to be the smallest water cluster with a three-dimensional hydrogen-bonding network as its minimum energy structure. There are several possible low-energy isomers, and calculations with different methods and basis sets assign them different relative stabilities. Previous experimental work has provided evidence for the cage, book, and cyclic isomers, but no experiment has identified multiple coexisting structures. Here, we report that broadband rotational spectroscopy in a pulsed supersonic expansion unambiguously identifies all three isomers; we determined their oxygen framework structures by means of oxygen-18–substituted water (H218O). Relative isomer populations at different expansion conditions establish that the cage isomer is the minimum energy structure. Rotational spectra consistent with predicted heptamer and nonamer structures have also been identified.

Hydrogen Bond Cooperativity and the Three‐Dimensional Structures of Water Nonamers and Decamers

Broadband rotational spectroscopy of water clusters produced in a pulsed molecular jet expansion has been used to determine the oxygen atom geometry in three isomers of the nonamer and two isomers of the decamer. The isomers for each cluster size have the same nominal geometry but differ in the arrangement of their hydrogen bond networks. The nearest neighbor OO distances show a characteristic pattern for each hydrogen bond network isomer that is caused by three-body effects that produce cooperative hydrogen bonding. The observed structures are the lowest energy cluster geometries identified by quantum chemistry and the experimental and theoretical OO distances are in good agreement. The cooperativity effects revealed by the hydrogen bond OO distance variations are shown to be consistent with a simple model for hydrogen bonding in water that takes into account the cooperative and anticooperative bonding effects of nearby water molecules.

DETECTION OF E-CYANOMETHANIMINE TOWARD SAGITTARIUS B2(N) IN THE GREEN BANK TELESCOPE PRIMOS SURVEY

The detection of E-cyanomethanimine (E-HNCHCN) toward Sagittarius B2(N) is made by comparing the publicly available Green Bank Telescope (GBT) PRIMOS survey spectra to laboratory rotational spectra from a reaction product screening experiment. The experiment uses broadband molecular rotational spectroscopy to monitor the reaction products produced in an electric discharge source using a gas mixture of NH3 and CH3CN. Several transition frequency coincidences between the reaction product screening spectra and previously unassigned interstellar rotational transitions in the PRIMOS survey have been assigned to E-cyanomethanimine. A total of eight molecular rotational transitions of this molecule between 9 and 50?GHz are observed with the GBT. E-cyanomethanimine, often called the HCN dimer, is an important molecule in prebiotic chemistry because it is a chemical intermediate in proposed synthetic routes of adenine, one of the two purine nucleobases found in DNA and RNA. New analyses of the rotational spectra of both E-cyanomethanimine and Z-cyanomethanimine that incorporate previous millimeter-wave measurements are also reported.

Probing the CH⋅⋅⋅π Weak Hydrogen Bond in Anesthetic Binding: The Sevoflurane–Benzene Cluster

Cooperativity between weak hydrogen bonds can be revealed in molecular clusters isolated in the gas phase. Here we examine the structure, internal dynamics, and origin of the weak intermolecular forces between sevoflurane and a benzene molecule, using multi-isotopic broadband rotational spectra. This heterodimer is held together by a primary C-H⋅⋅⋅π hydrogen bond, assisted by multiple weak C-H⋅⋅⋅F interactions. The multiple nonbonding forces hinder the internal rotation of benzene around the isopropyl C-H bond in sevoflurane, producing detectable quantum tunneling effects in the rotational spectrum.

Theory vs. experiment for molecular clusters: Spectra of OCS trimers and tetramers

All singly substituted (13)C, (18)O, and (34)S isotopomers of the previously known OCS trimer are observed in natural abundance in a broad-band spectrum measured with a chirped-pulse Fourier transform microwave spectrometer. The complete substitution structure thus obtained critically tests (and confirms) the common assumption that monomers tend to retain their free structure in a weakly bound cluster. A new OCS trimer isomer is also observed, and its structure is determined to be barrel-shaped but with the monomers all approximately aligned, in contrast to the original trimer which is barrel-shaped with two monomers aligned and one anti-aligned. An OCS tetramer spectrum is assigned for the first time, and the tetramer structure resembles an original trimer with an OCS monomer added at the end with two sulfur atoms. Infrared spectra observed in the region of the OCS ν1 fundamental (≈2060 cm(-1)) are assigned to the same OCS tetramer, and another infrared band is tentatively assigned to a different tetramer isomer. The experimental results are compared and contrasted with theoretical predictions from the literature and from new cluster calculations which use an accurate OCS pair potential and assume pairwise additivity.

Effect of aromatic ring fluorination on CH⋯π interactions: rotational spectrum and structure of the fluorobenzene⋯acetylene weakly bound dimer

The rotational spectra for the normal isotopic species and for six (13)C singly substituted isotopologues (in natural abundance) of the fluorobenzene···acetylene (C6H5F···HCCH) weakly bound dimer have been measured in the 6.5-18.5 GHz region using chirped-pulse Fourier-transform microwave spectroscopy. The HCCH molecule interacts with the fluorobenzene via a CH···π contact and is determined to lie almost over the center of, and approximately perpendicular to, the aromatic ring, with an H···π distance (perpendicular distance from the H atom to the ring plane) of around 2.492(47) Å; a slight tilt of HCCH towards the para carbon atom of the fluorobenzene is evident. Binding energies of this complex and related benzene and fluorobenzene dimers obtained from the pseudodiatomic approximation are compared and indicate that fluorobenzene···acetylene lies among the more weakly bound of the complexes exhibiting some type of CH···π interaction.

The gas-phase structure of the asymmetric, trans-dinitrogen tetroxide (N2O4), formed by dimerization of nitrogen dioxide (NO2), from rotational spectroscopy and ab initio quantum chemistry

We report the first experimental gas-phase observation of an asymmetric, trans-N2O4 formed by the dimerization of NO2. In additional to the dominant 14N216O4 species, rotational transitions have been observed for all species with single 15N and 18O substitutions as well as several multiply substituted isotopologues. These transitions were used to determine a complete substitution structure as well as an r0 structure from the fitted zero-point averaged rotational constants. The determined structure is found to be that of an ON-O-NO2 linkage with the shared oxygen atom closer to the NO2 than the NO (1.42 vs 1.61 Å). The structure is found to be nearly planar with a trans O-N-O-N linkage. From the spectra of the 14N15NO4 species, we were able to determine the nuclear quadrupole coupling constants for each specific nitrogen atom. The equilibrium structure determined by ab initio quantum chemistry calculations is in excellent agreement with the experimentally determined structure. No spectral evidence of the predicted asymmetric, cis-N2O4 was found in the spectra.

The molecular structure of methylfluoroisocyanato silane: a combined microwave spectral and theoretical study.

The structure of methyldifluoroisocyanato silane, MeF2SiNCO (2), has been studied by molecular rotational spectroscopy. The rotational spectrum has a complicated structure from (14)N nuclear quadrupole coupling and internal rotation of the methyl group. Cavity Fourier-transform microwave spectroscopy measurements were important for providing high spectral resolution to analyze the quadrupole and internal rotation fine structure. Broadband chirped-pulse Fourier-transform microwave spectroscopy was used to achieve high measurement sensitivity making it possible to observe the lower abundance C, N, O, and Si isotopologues in natural abundance for structure determination. Analysis of the microwave spectrum of the most abundant isotopomer of MeF2SiNCO (2) yields the rotational constants: A = 3827.347(7), B = 1264.5067(14), and C = 1240.6182(11) MHz. The spectrum has been analyzed in the I(r) representation for Cs symmetry, with inclusion of the 3-fold rotor (V3 = 446(50) cm(-1)). A partial substitution structure was obtained for the C, Si, N, and O atoms. The analysis was assisted by calculations of the equilibrium structure, using a 6-311++G (3df, 3pd) basis set, with calculations at each of the B3LYP, MP2, and CCSD(T) levels. The calculated and experimental rotational constants are only consistent with a trans-orientation at each of the HCSiN, CSiNC, and SiNCO centers; there is relatively close agreement between the experimental and the theoretical structures, especially at the CCSD(T) level. In addition, the observed low value for the (14)N quadrupole coupling term (χbb - χcc) implies a wide SiNC angle, which is consistent with the calculated values: 165.3° (B3LYP), 157.6° (MP2), and 157.4° (CCSD(T)). The skeletal bending potential is discussed.

Molecular Structure of Cyclopropyl (Isocyanato) Silane: A Combined Microwave Spectral and Theoretical Study

The molecular equilibrium structures of two conformers (cis and gauche) of C3H5-SiH2-NCO have been deduced by a combination of microwave (MW) spectra at natural abundance including data from (13)C and (29,30)Si isotopomers and ab initio calculations. The MW rotational constants (RCs) for the most abundant isotopes are cis: A = 4216.3617(64), B = 1225.76654(91), and C = 1037.31468(77) MHz and gauche: A = 4955.55(79), B = 1094.9276(81), and C = 942.7031(80) MHz. The symmetric quartic centrifugal distortion constants have been evaluated for the cis conformer, using the I(r) representation for CS symmetry. Only partial substitution structures (PSSs) could be derived from the spectra after inclusion of the above isotopic combinations at each center. Using the PSSs, the full structures were determined by ab initio calculation of the equilibrium structures using coupled-cluster singles and doubles with selected triples configuration calculations (CCSD(T)); the two conformers have an energy difference of 228 cm(-1) (cis lower than gauche). The similarity of the calculated and MW RC results confirms the identities of the two compounds. The more interesting cis conformer has bond lengths C2-Si3, 1.9072(73), C2-C9 1.464(22), and C9-C10 1.4944(33) Å and angles Si3-C2-C10 119.4(12)° and C9-C2-C10 57.1(12)°, with similar results for the gauche conformer. The Si3N4C5 angle is wide in the cis conformer (145°) and nearly linear in the gauche conformer (179°). New physical insights into the bonding of cis conformers of this type have led the identification of an attractive force between the relatively crowded cyclopropyl and isocyanato groups in the cis conformation. This is demonstrated by three methods: Comparing electronic charges (both AIMALL and Mulliken analyses) in the pair of conformers shows a relative shift of density between these groups in the cis compound. Comparison of the highest occupied molecular orbitals (HOMOs) shows major mixing of density, exemplified by HOMO-1 in these structural units for the cis conformer but which is absent for the gauche conformer. Finally, the nearly linear isocyanate moiety (and the molecular dipole moment) of the cis conformer points closely toward the connected C atom of the cyclopropyl ring, while the gauche conformer dipole moment is significantly different in direction and points toward the midpoint of the C2Si3 bond. Both the HCSiN torsional and Si-N═C bending surfaces connecting these conformers were explored at the Møller-Plesset second-order perturbation theory level (MP2), which led to the exclusion of other conformers. The bending surface shows a very high amount of quartic potential function.

Rotational spectra and theoretical study of tetramers and trimers of 2-fluoroethanol: dramatic intermolecular compensation for intramolecular instability

Using broadband rotational spectroscopy aided by high level ab initio calculations, we probe structural diversity and emerging bulk behavior in trimeric and tetrameric aggregates of the transiently chiral 2-fluoroethanol (FE). One FE tetramer which is homochiral and features a highly compact arrangement that is stabilized by a water tetramer-like H-bond ring and a network of fully bifurcated C-HF H-bonds, and two higher energy FE trimers which feature a water trimer-like H-bond ring, were observed experimentally in a jet expansion. The three most stable FE trimers predicted within a few kJ mol-1 are all made of the most stable FE subunit and are detected experimentally. Unexpectedly, two out of the three most stable FE tetramers exclusively consist of much less stable subunits. For example, one FE tetramer that contains four less stable subunits, which are in total ∼40 kJ mol-1 less stable than their global minimum counterparts, is predicted to be of similar stability as the tetramer containing four global minimum subunits. High level theoretical modeling is essential in providing a comprehensive picture of the energetic and structural landscapes of the FE tetramer, an intriguing system at the interface between gas- and bulk-phase behavior, where the conformational specificity seen in the gas-phase is still experimentally relevant but plays a diminished role relative to the intermolecular topology and cooperative stability.