Nicholas Morley

Production of NO, N2O and N2 by extracted soil bacteria, regulation by NO2− and O2 concentrations

The oxygen control of denitrification and its emission of NO/N2O/N2 was investigated by incubation of Nycodenz-extracted soil bacteria in an incubation robot which monitors O2, NO, N2O and N2 concentrations (in He+O2 atmosphere). Two consecutive incubations were undertaken to determine (1) the regulation of denitrification by O2 and NO2(-) during respiratory O2 depletion and (2) the effects of re-exposure to O2 of cultures with fully expressed denitrification proteome. Early denitrification was only detected (as NO and N2O) at <or=80 microM O2 in treatments with NO2(-), and the rates were three orders of magnitude lower than the rates observed after oxygen depletion (with N2 as the primary product). When re-exposed to O2, the cultures continued to denitrify (8-55% of the rates during the foregoing anoxic phase), but its main product was N2O. The N2O reductase activity recovered as oxygen was being depleted. The results suggest that expression of the denitrifying proteome may result in significant subsequent aerobic denitrification, and this has profound implications for the understanding and modelling of denitrification and N2O emission. Short anoxic spells caused by transient flooding during rainfall, could lead to subsequent unbalanced aerobic denitrification, in which N2O is a major end product.

Soil nitrate reducing processes drivers, mechanisms for spatial variation, and significance for nitrous oxide production

The microbial processes of denitrification and dissimilatory nitrate reduction to ammonium (DNRA) are two important nitrate reducing mechanisms in soil, which are responsible for the loss of nitrate (NO3−) and production of the potent greenhouse gas, nitrous oxide (N2O). A number of factors are known to control these processes, including O2 concentrations and moisture content, N, C, pH, and the size and community structure of nitrate reducing organisms responsible for the processes. There is an increasing understanding associated with many of these controls on flux through the nitrogen cycle in soil systems. However, there remains uncertainty about how the nitrate reducing communities are linked to environmental variables and the flux of products from these processes. The high spatial variability of environmental controls and microbial communities across small sub centimeter areas of soil may prove to be critical in determining why an understanding of the links between biotic and abiotic controls has proved elusive. This spatial effect is often overlooked as a driver of nitrate reducing processes. An increased knowledge of the effects of spatial heterogeneity in soil on nitrate reduction processes will be fundamental in understanding the drivers, location, and potential for N2O production from soils.

Substrate Induced Denitrification over or under Estimates Shifts in Soil N2/N2O Ratios

The increase in atmospheric nitrous oxide (N2O), a potent greenhouse and ozone depleting gas, is of serious global concern. Soils are large contributors to this increase through microbial processes that are enhanced in agricultural land due to nitrogenous fertilizer applications. Denitrification, a respiratory process using nitrogen oxides as electron acceptors in the absence of oxygen, is the main source of N2O. The end product of denitrification is benign dinitrogen (N2) and understanding what regulates the shift in ratio of N2O and N2 emission is crucial for mitigation strategies. The role of organic carbon in controlling N2O reduction is poorly understood, and mostly based on application of glucose. Here we investigated how a range of carbon compounds (succinate, butyrate, malic acid, acetate, glucose, sucrose and cysteine) affect denitrifier N2/N2O production stoichiometry under laboratory conditions. The results show that a soils capability in efficiently reducing N2O to N2 is C substrate dependent and most compounds tested were different in regards to this efficiency compared to glucose. We challenge the concept of using glucose as a model soil C compound in furthering our understanding of denitrification and specifically the efficiency in the N2O reductase enzyme. Organic acids, commonly exuded by roots, increased N2/N2O ratios compared to glucose, and therefore mitigated net N2O release and we suggest provides better insights into soil regulatory aspects of N2O reduction. The widespread use of glucose in soil laboratory studies could lead to misleading knowledge on the functioning of denitrification in soils with regards to N2O reduction.

Nitrogen availability alters rhizosphere processes mediating soil organic matter mineralisation

Background and aimsThe intrinsic nitrogen (N) supply capacity of soil is central to understanding the productivity of natural plant communities, and essential in the context of determining optimal fertilization rates for agricultural soils. However, it is largely unknown how nutrient availability affects plant mediated priming effects driving soil organic matter mineralisation and associated N-fluxes.MethodsWe applied continuous, steady-state 13C–CO2 labelling to Lolium perenne grown in high and low productivity grassland soils to allow quantification of SOM- and root-derived soil CO2 efflux. Nutrient treatments (N, P and K) were applied as repeated additions to soils, and impacts on source partitioned soil CO2 efflux were assessed relative to unamended planted and fallow soils. Plants were clipped to uniform height at weekly intervals.ResultsIncreasing nutrient availability in both soils resulted in a reduction in plant-mediated SOM mineralisation and clipping of plants greatly lowered root-derived respiration but increased SOM mineralisation. Nutrient addition to fallow systems had no effect on SOM mineralisation in either soil. Plant growth stimulated SOM priming, concurrent mobilisation of N from SOM and subsequent plant N uptake in the high productivity soil. Priming was not observed in the low productivity soil due to its greater inherent organic matter stability, resulting in lowered plant-mediated and basal SOM mineralisation.ConclusionsThat addition of nutrients reduced SOM mineralisation in planted systems but had no effect in fallow systems is indicative of nutrient availability specifically altering plant-mediated priming of SOM mineralisation. We suggest that plant-soil interactions mediating priming effects are an important determinant of productivity and that the magnitudes of these effects are modified by nutrient availability and soil-specific controls.