Nicholas W. Roberts

Photophysiology and albedo-changing potential of the ice algal community on the surface of the Greenland ice sheet

Darkening of parts of the Greenland ice sheet surface during the summer months leads to reduced albedo and increased melting. Here we show that heavily pigmented, actively photosynthesising microalgae and cyanobacteria are present on the bare ice. We demonstrate the widespread abundance of green algae in the Zygnematophyceae on the ice sheet surface in Southwest Greenland. Photophysiological measurements (variable chlorophyll fluorescence) indicate that the ice algae likely use screening mechanisms to downregulate photosynthesis when exposed to high intensities of visible and ultraviolet radiation, rather than non-photochemical quenching or cell movement. Using imaging microspectrophotometry, we demonstrate that intact cells and filaments absorb light with characteristic spectral profiles across ultraviolet and visible wavelengths, whereas inorganic dust particles typical for these areas display little absorption. Our results indicate that the phototrophic community growing directly on the bare ice, through their photophysiology, most likely have an important role in changing albedo, and subsequently may impact melt rates on the ice sheet.

Non-polarizing broadband multilayer reflectors in fish

Dielectric multilayer reflectors that are non-polarizing are an important class of optical device and have numerous applications within optical fibres [1], dielectric waveguides [2] and LEDs [3]. Here we report analyses of a biological non-polarizing optical mechanism found in the broadband guanine-cytoplasm “silver” multilayer reflectors of three species of fish. Present in the fish stratum argenteum are two populations of birefringent guanine crystal, each with their optic axes either parallel to the long axis of the crystal or perpendicular to the plane of the crystal. This arrangement neutralizes the polarization of reflection due the different interfacial Brewster’s angles of each population. The fish reflective mechanism is distinct from existing non-polarizing mirror designs [4, 5, 6, 7] with the important feature that there is no refractive index contrast between the low index layers in the reflector and the external environment. It is a mechanism that could be readily manufactured and exploited in synthetic optical devices.

Thermotropic biaxial nematic order parameters and phase transitions deduced by Raman scattering

Raman Scattering was used to investigate biaxiality in the nematic phase formed by the bent-core material, C5-Ph-ODBP-Ph-OC12. Linearly polarised light was normally incident on a homogeneously aligned sample, and the depolarisation ratio was measured over a 360° rotation of the incident polarisation for the Raman-active phenyl stretching mode. By modeling the bent-core structure and fitting to the depolarisation data, both the uniaxial (P200 and P400) and biaxial (P220, P420 and P440) order parameters, are deduced. We show unequivocally the presence of a uniaxial to biaxial nematic phase transition approximately 30 °C above the underlying smectic phase. Further, we report the temperature evolution of the biaxial and uniaxial order parameters, which increase in magnitude continuously with reducing temperature, reaching values of 0.1, −0.15 and −0.18 for P220, P420 and P440, respectively.

The molecular basis of mechanisms underlying polarization vision.

The underlying mechanisms of polarization sensitivity (PS) have long remained elusive. For rhabdomeric photoreceptors, questions remain over the high levels of PS measured experimentally. In ciliary photoreceptors, and specifically cones, little direct evidence supports any type of mechanism. In order to promote a greater interest in these fundamental aspects of polarization vision, we examined a varied collection of studies linking membrane biochemistry, protein–protein interactions, molecular ordering and membrane phase behaviour. While initially these studies may seem unrelated to polarization vision, a common narrative emerges. A surprising amount of evidence exists demonstrating the importance of protein–protein interactions in both rhabdomeric and ciliary photoreceptors, indicating the possible long-range ordering of the opsin protein for increased PS. Moreover, we extend this direction by considering how such protein paracrystalline organization arises in all cell types from controlled membrane phase behaviour and propose a universal pathway for PS to occur in both rhabdomeric and cone photoreceptors.

Cyp27c1 Red-Shifts the Spectral Sensitivity of Photoreceptors by Converting Vitamin A1 into A2

Some vertebrate species have evolved means of extending their visual sensitivity beyond the range of human vision. One mechanism of enhancing sensitivity to long-wavelength light is to replace the 11-cis retinal chromophore in photopigments with 11-cis 3,4-didehydroretinal. Despite over a century of research on this topic, the enzymatic basis of this perceptual switch remains unknown. Here, we show that a cytochrome P450 family member, Cyp27c1, mediates this switch by converting vitamin A1 (the precursor of 11-cis retinal) into vitamin A2 (the precursor of 11-cis 3,4-didehydroretinal). Knockout of cyp27c1 in zebrafish abrogates production of vitamin A2, eliminating the animals ability to red-shift its photoreceptor spectral sensitivity and reducing its ability to see and respond to near-infrared light. Thus, the expression of a single enzyme mediates dynamic spectral tuning of the entire visual system by controlling the balance of vitamin A1 and A2 in the eye.

High-resolution polarisation vision in a cuttlefish

Summary For animals that can see it, the polarisation of light adds another dimension to vision, analogous to adding colour to a black and white image [1,2]. Whilst some animals use the orientation of the electric field vector (e-vector) for navigation and orientation [3], the ability to discriminate angular differences in e-vector has been implicated in object recognition for predator/prey detection [4,5] as well as signalling and communication [6]. In all animals previously tested, however, the resolution of e-vector angle discrimination has been found to be in the range 10–20° [5,7,8], which is inadequate for the typical e-vector differences measured in relevant natural visual scenes [9]. In this study, we found that mourning cuttlefish ( Sepia plangon ) are able to detect differences between e-vector orientations as small as 1°. Not only is this the most acute e-vector angle discrimination measured behaviourally in any animal, but it provides a high enough resolution to be relevant to real world visual tasks. We analysed natural underwater scenes using computer based polarisation imaging. When we increased the resolution of our system, we discovered information not detected using normal-resolution imaging polarimetry and invisible to animals lacking fine e-vector angle discrimination. For example, we found that high-resolution e-vector discrimination provides a new way of breaking typical intensity-based background matching. S. plangon lacks colour vision, like most other cephalopods, and high-resolution polarisation vision may provide an alternative source of contrast information that is just as fine-scale.

The biology of color

In living color Animals live in a colorful world, but we rarely stop to think about how this color is produced and perceived, or how it evolved. Cuthill et al. review how color is used for social signals between individual animals and how it affects interactions with parasites, predators, and the physical environment. New approaches are elucidating aspects of animal coloration, from the requirements for complex cognition and perception mechanisms to the evolutionary dynamics surrounding its development and diversification. Science, this issue p. eaan0221 BACKGROUND The interdisciplinary field of animal coloration is growing rapidly, spanning questions about the diverse ways that animals use pigments and structures to generate color, the underlying genetics and epigenetics, the perception of color, how color information is integrated with information from other senses, and general principles underlying color’s evolution and function. People working in the field appreciate linkages between these parallel lines of enquiry, but outsiders need the easily navigable roadmap that we provide here. ADVANCES In the past 20 years, the field of animal coloration research has been propelled forward by technological advances that include spectrophotometry, digital imaging, computational neuroscience, innovative laboratory and field studies, and large-scale comparative analyses, which are allowing new questions to be asked. For example, we can now pose questions about the evolution of camouflage based on what a prey’s main predator can see, and we can start to appreciate that gene changes underlying color production have occurred in parallel in unrelated species. Knowledge of the production, perception, and evolutionary function of coloration is poised to make contributions to areas as diverse as medicine, security, clothing, and the military, but we need to take stock before moving forward. OUTLOOK Here, a group of evolutionary biologists, behavioral ecologists, psychologists, optical physicists, visual physiologists, geneticists, and anthropologists review this diverse area of science, daunting to the outsider, and set out what we believe are the key questions for the future. These are how nanoscale structures are used to manipulate light; how dynamic changes in coloration occur on different time scales; the genetics of coloration (including key innovations and the extent of parallel changes in different lineages); alternative perceptions of color by different species (including wavelengths that we cannot see, such as ultraviolet); how color, pattern, and motion interact; and how color works together with other modalities, especially odor. From an adaptive standpoint, color can serve several functions, and the resulting patterns frequently represent a trade-off among different evolutionary drivers, some of which are nonvisual (e.g., photoprotection). These trade-offs can vary between individuals within the same population, and color can be altered strategically on different time scales to serve different purposes. Lastly, interspecific differences in coloration, sometimes even observable in the fossil record, give insights into trait evolution. The biology of color is a field that typifies modern research: curiosity-led, technology-driven, multilevel, interdisciplinary, and integrative. Spectacular changes to color and morphology in a cuttlefish. Color can conceal or reveal. The giant Australian cuttlefish (Sepia apama) alters the relative size of its pigment-bearing chromatophores and warps its muscular skin to switch between camouflage mode (top) and communication mode (bottom) in under a second. Photos:

Bumblebees Learn Polarization Patterns

Summary Foraging insect pollinators such as bees must find and identify flowers in a complex visual environment. Bees use skylight polarization patterns for navigation [1–3], a capacity mediated by the polarization-sensitive dorsal rim area (DRA) of their eye [4, 5]. While other insects use polarization sensitivity to identify appropriate habitats [6], oviposition sites, and food sources [7], to date no nonnavigational functions of polarization vision have been identified in bees. Here we investigated the ability of bumblebees (Bombus terrestris) to learn polarization patterns on artificial “flowers” in order to obtain a food reward. We show that foraging bumblebees can learn to discriminate between two differently polarized targets, but only when the target artificial “flower” is viewed from below. A context for these results is provided by polarization imaging of bee-pollinated flowers, revealing the potential for polarization patterns in real flowers. Bees may therefore have the ability to use polarization vision, possibly mediated by their polarization-sensitive DRA, both for navigation and to learn polarization patterns on flowers, the latter being the first nonnavigational function for bee polarization vision to be identified.

A novel vertebrate eye using both refractive and reflective optics.

Sunlight is attenuated rapidly in the ocean, resulting in little visually useful light reaching deeper than approximately 1000 m in even the clearest water. To maximize sensitivity to the relatively brighter downwelling sunlight, to view the silhouette of animals above them, and to increase the binocular overlap of their eyes, many mesopelagic animals have developed upward-pointing tubular eyes. However, these sacrifice the ability to detect bioluminescent and reflective objects in other directions. Thus, some mesopelagic fish with tubular eyes extend their visual fields laterally and/or ventrally by lensless ocular diverticula, which are thought to provide unfocused images, allowing only simple detection of objects, with little spatial resolution. Here, we show that a medial mirror within the ventrally facing ocular diverticulum of the spookfish, Dolichopteryx longipes, consisting of a multilayer stack derived from a retinal tapetum, is used to reflect light onto a lateral retina. The reflective plates are not orientated parallel to the surface of the mirror. Instead, plate angles change progressively around the mirror, and computer modeling indicates that this provides a well-focused image. This is the first report of an ocular image being formed in a vertebrate eye by a mirror.

Continuously rotating chiral liquid crystal droplets in a linearly polarized laser trap

The transfer of optical angular momentum to birefringent particles via circularly polarized light is common. We report here on the unexpected, continuous rotation of chiral nematic liquid crystal droplets in a linearly polarized optical trap. The rotation is non-uniform, occurs over a timescale of seconds, and is observed only for very specific droplet sizes. Synchronized vertical motion of the droplet occurs during the rotation. The motion is the result of photo-induced molecular reorganization, providing a micron sized opto-mechanical transducer that twists and translates.