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Featured researches published by Nolan Nichols.


Scientific Data | 2016

Sharing brain mapping statistical results with the neuroimaging data model

Camille Maumet; Tibor Auer; Alexander Bowring; Gang Chen; Samir Das; Guillaume Flandin; Satrajit S. Ghosh; Tristan Glatard; Krzysztof J. Gorgolewski; Karl G. Helmer; Mark Jenkinson; David B. Keator; Nolan Nichols; Jean-Baptiste Poline; Richard C. Reynolds; Vanessa Sochat; Jessica A. Turner; Thomas E. Nichols

Only a tiny fraction of the data and metadata produced by an fMRI study is finally conveyed to the community. This lack of transparency not only hinders the reproducibility of neuroimaging results but also impairs future meta-analyses. In this work we introduce NIDM-Results, a format specification providing a machine-readable description of neuroimaging statistical results along with key image data summarising the experiment. NIDM-Results provides a unified representation of mass univariate analyses including a level of detail consistent with available best practices. This standardized representation allows authors to relay methods and results in a platform-independent regularized format that is not tied to a particular neuroimaging software package. Tools are available to export NIDM-Result graphs and associated files from the widely used SPM and FSL software packages, and the NeuroVault repository can import NIDM-Results archives. The specification is publically available at: http://nidm.nidash.org/specs/nidm-results.html.


bioRxiv | 2016

NIDM‐Results: a Neuroimaging Data Model to share brain mapping statistical results

Camille Maumet; Tibor Auer; Alexander Bowring; Gang Chen; Samir Das; Guillaume Flandin; Satrajit S. Ghosh; Tristan Glatard; Krzysztof J. Gorgolewski; Karl G. Helmer; Mark Jenkinson; David B. Keator; Nolan Nichols; Jean-Baptiste Poline; Richard C. Reynolds; Vanessa Sochat; Jessica A. Turner; Thomas E. Nichols

Only a tiny fraction of the data and metadata produced by an fMRI study is finally conveyed to the community. This lack of transparency not only hinders the reproducibility of neuroimaging results but also impairs future meta-analyses. In this work we introduce NIDM-Results, a standard providing a machine-readable description of neuroimaging statistical results along with key image data summarising the experiment. NIDM-Results provides a unified representation of mass univariate analyses including a level of detail consistent with available best practices. This standard allows authors to relay methods and results in a standard format that is not tied to a particular neuroimaging software package. Tools are available to export NIDM-Result graphs and associated files from the widely used SPM and FSL software packages, and the NeuroVault repository can import NIDM-Results archives. The specification is publically available at: http://nidm.nidash.org/specs/nidm-results.html.Only a tiny fraction of the data and metadata produced by an fMRI study is finally conveyed to the community. This lack of transparency not only hinders the reproducibility of neuroimaging results but also impairs future meta-analyses. In this work we introduce NIDM-Results, a format specification providing a machine-readable description of neuroimaging statistical results along with key image data summarising the experiment. NIDM-Results provides a unified representation of mass univariate analyses including a level of detail consistent with available best practices. This standardized representation allows authors to relay methods and results in a platform-independent regularized format that is not tied to a particular neuroimaging software package. Tools are available to export NIDM-Result graphs and associated files from the widely used SPM and FSL software packages, and the NeuroVault repository can import NIDM-Results archives. The specification is publically available at: http://nidm.nidash.org/specs/nidm-results.html.


Archive | 2016

nibabel: 2.1.0

Matthew Brett; Samuel St-Jean; bpinsard; Eric Larson; Satrajit S. Ghosh; Nolan Nichols; Ariel Rokem; Gaël Varoquaux; Bago Amirbekian; jaeilepp; Alexandre Gramfort; Ian Nimmo-Smith; Erik Kastman; chaselgrove; Jarrod Millman; Chris Markiewicz; Gregory R. Lee; embaker; Nikolaas N. Oosterhof; Marc-Alexandre Côté; Yaroslav O. Halchenko; Félix C. Morency; Jasper J.F. van den Bosch; Michael Hanke; cindeem; moloney; Ben Cipollini; Stephan Gerhard; Eleftherios Garyfallidis; Krish Subramaniam


Archive | 2016

nibabel 1.2.2

Matthew Brett; Samuel St-Jean; bpinsard; Eric Larson; Satrajit S. Ghosh; Nolan Nichols; Ariel Rokem; Bago Amirbekian; jaeilepp; Alexandre Gramfort; Ian Nimmo-Smith; Erik Kastman; chaselgrove; Jarrod Millman; Chris Markiewicz; Gregory R. Lee; embaker; Nikolaas N. Oosterhof; Marc-Alexandre Côté; Yaroslav O. Halchenko; Félix C. Morency; Jasper J.F. van den Bosch; Michael Hanke; cindeem; moloney; Ben Cipollini; Stephan Gerhard; Krish Subramaniam


Archive | 2015

nibabel 2.0.1

Matthew Brett; Samuel St-Jean; bpinsard; Eric Larson; Satrajit S. Ghosh; Nolan Nichols; Ariel Rokem; Bago Amirbekian; jaeilepp; Alexandre Gramfort; Ian Nimmo-Smith; Erik Kastman; chaselgrove; Jarrod Millman; Chris Markiewicz; Gregory R. Lee; embaker; Nikolaas N. Oosterhof; Marc-Alexandre Côté; Yaroslav O. Halchenko; Félix C. Morency; Jasper J.F. van den Bosch; Michael Hanke; cindeem; moloney; Ben Cipollini; Stephan Gerhard; Krish Subramaniam


21st Annual Meeting of the Organization for Human Brain Mapping (OHBM 2015) | 2015

Application of the Neuroimaging Data Model to Represent and Exchange Primary and Derived Data

Nolan Nichols; David B. Keator; Satrajit S. Ghosh; Camille Maumet; Guillaume Flandin; Thomas E. Nichols; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Michael Hanke; Christian Haselgrove; Karl G. Helmer; Daniel S. Marcus; Russell A. Poldrack; Jessica A. Turner; David W. Kennedy; Jean-Baptiste Poline; Kilian M. Pohl


21st Annual Meeting of the Organization for Human Brain Mapping (OHBM 2015) | 2015

Standardized reporting of neuroimaging results with NIDM in SPM, FSL and AFNI

Camille Maumet; Nolan Nichols; Guillaume Flandin; Karl G. Helmer; Tibor Auer; Richard C. Reynolds; Ziad S. Saad; Gang Chen; Mark Jenkinson; Matthew Webster; Jason Steffener; Krzysztof J. Gorgolewski; Jessica Turner; Thomas E. Nichols; Satrajit S. Ghosh; Jean-Baptiste Poline; David B. Keator


21st Annual Meeting of the Organization for Human Brain Mapping (OHBM 2015) | 2015

Developing Terminologies for the INCF Neuroimaging Data Model (NIDM)

Karl G. Helmer; Jessica Turner; Camille Maumet; Thomas E. Nichols; Nolan Nichols; David B. Keator; Satrajit S. Ghosh; Tibor Auer; Jean-Baptiste Poline


Frontiers in Neuroinformatics | 2014

Developing and using the data models for neuroimaging: the NIDASH Working Group

David B. Keator; Satrajit S. Ghosh; Camille Maumet; Guillaume Flandin; Nolan Nichols; Thomas E. Nichols; Gully A. P. C. Burns; R Bruehl; Cameron Craddock; B Federick; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Michael Hanke; Christian Haselgrove; Karl G. Helmer; Arno Klein; Daniel S. Marcus; Michael P. Milham; F Michel; Russell A. Poldrack; Jason Steffener; Yannick Schwartz; R Stoner; Jessica A. Turner; David N. Kennedy; Jean Baptiste Poline


Neuroinformatics | 2012

Mindboggle 2: Automated human brain MRI feature extraction, identification, shape analysis, and labeling

Arno Klein; Forrest Sheng Bao; Eliezer Stavsky; Yrjö Häme; Joachim Giard; Nolan Nichols; Satrajit S. Ghosh

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Satrajit S. Ghosh

Massachusetts Institute of Technology

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Michael Hanke

Otto-von-Guericke University Magdeburg

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Guillaume Flandin

Wellcome Trust Centre for Neuroimaging

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Tibor Auer

Cognition and Brain Sciences Unit

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